Epdr1 cDNA ORF clone, Mus musculus(house mouse)

Gene
Clones
gRNAs

Summary

Gene Symbol	Epdr1
Entrez Gene ID	105298
Full Name	ependymin related protein 1 (zebrafish)
Synonyms	AU040950,AV006210,Epdm2,Epdr2,MERP-1,MERP-2,MERP2,Ucc1
General protein information	Preferred Names ependymin related protein 1 (zebrafish) Names mammalian ependymin-related protein 1 ependymin 2 ependymin related protein 2 upregulated in colorectal cancer gene 1
Gene Type	protein-coding
Organism	Mus musculus(house mouse)
Genome	Chromosome: 13 Map Location: 13\|13 A2

mRNA and Protein(s)

mRNA	Protein	Name
XM_006516518.3	XP_006516581.1	mammalian ependymin-related protein 1 isoform X1
NM_134065.4	NP_598826.3	mammalian ependymin-related protein 1 precursor

Pathways from BioSystems

Homologies

Canis lupus familiaris (dog)	EPDR1	XP_005630990.1
Xenopus tropicalis (tropical clawed frog)	epdr1	XP_002939463.1
Bos taurus (cattle)	EPDR1	NP_001095758.1
Rattus norvegicus (Norway rat)	Epdr1	NP_001007626.1
Gallus gallus (chicken)	EPDR1	XP_418830.2
Homo sapiens (human)	EPDR1	NP_060019.2
Pan troglodytes (chimpanzee)	EPDR1	XP_003318311.1
Mus musculus (house mouse)	Epdr1	NP_598826.3
Danio rerio (zebrafish)	epdr1	NP_001002416.1

Gene Ontology
Bibliography

Related articles in PubMed

High-throughput discovery of novel developmental phenotypes.
Dickinson ME, Flenniken AM, Ji X, Teboul L, Wong MD, White JK, Meehan TF, Weninger WJ, Westerberg H, Adissu H, Baker CN, Bower L, Brown JM, Caddle LB, Chiani F, Clary D, Cleak J, Daly MJ, Denegre JM, Doe B, Dolan ME, Edie SM, Fuchs H, Gailus-Durner V, Galli A, Gambadoro A, Gallegos J, Guo S, Horner NR, Hsu CW, Johnson SJ, Kalaga S, Keith LC, Lanoue L, Lawson TN, Lek M, Mark M, Marschall S, Mason J, McElwee ML, Newbigging S, Nutter LM, Peterson KA, Ramirez-Solis R, Rowland DJ, Ryder E, Samocha KE, Seavitt JR, Selloum M, Szoke-Kovacs Z, Tamura M, Trainor AG, Tudose I, Wakana S, Warren J, Wendling O, West DB, Wong L, Yoshiki A, , , , , , , , , MacArthur DG, Tocchini-Valentini GP, Gao X, Flicek P, Bradley A, Skarnes WC, Justice MJ, Parkinson HE, Moore M, Wells S, Braun RE, Svenson KL, de Angelis MH, Herault Y, Mohun T, Mallon AM, Henkelman RM, Brown SD, Adams DJ, Lloyd KC, McKerlie C, Beaudet AL, Bu?an M, Murray SA
Nature537(7621)508-514(2016 09)

Extracellular matrix secretion by cardiac fibroblasts: role of microRNA-29b and microRNA-30c.
Abonnenc M, Nabeebaccus AA, Mayr U, Barallobre-Barreiro J, Dong X, Cuello F, Sur S, Drozdov I, Langley SR, Lu R, Stathopoulou K, Didangelos A, Yin X, Zimmermann WH, Shah AM, Zampetaki A, Mayr M
Circulation research113(10)1138-47(2013 Oct)

A genomic atlas of mouse hypothalamic development.
Shimogori T, Lee DA, Miranda-Angulo A, Yang Y, Wang H, Jiang L, Yoshida AC, Kataoka A, Mashiko H, Avetisyan M, Qi L, Qian J, Blackshaw S
Nature neuroscience13(6)767-75(2010 Jun)

Demonstration of lysosomal localization for the mammalian ependymin-related protein using classical approaches combined with a novel density shift method.
Della Valle MC, Sleat DE, Sohar I, Wen T, Pintar JE, Jadot M, Lobel P
The Journal of biological chemistry281(46)35436-45(2006 Nov)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

A novel density shift method was used to demonstrate that EPDR resides in the lysosome.
Title: Demonstration of lysosomal localization for the mammalian ependymin-related protein using classical approaches combined with a novel density shift method.

The following Epdr1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Epdr1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OMu48303	XM_006516518.3 Latest version!	Mus musculus ependymin related protein 1 (zebrafish) (Epdr1), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$69.30 $99.00
OMu10494	NM_134065.4 Latest version!	Mus musculus ependymin related protein 1 (zebrafish) (Epdr1), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	5-7	$188.30 $269.00

ORF Online Only Promotion

Next-day Shipping ORF Clones ( in default vector with tag)
1 Clone	30% OFF
2-4 Clone	40% OFF
5 or more Clone	50% OFF
All Other ORF Clones
30% OFF

*Business Day

** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Epdr1 ( XM_006516518.3 ) cDNA ORF clone, Mus musculus(house mouse) -> XP_006516581.1 Mus musculus ependymin related protein 1 (zebrafish) (Epdr1), transcript variant X1, mRNA.

Price & Availability↑

CloneID	OMu48303
Clone ID Related Accession (Same CDS sequence)	XM_006516518.3
Accession Version	XM_006516518.3 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 399bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-06-21
Organism	Mus musculus(house mouse)
Product	mammalian ependymin-related protein 1 isoform X1
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000079.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_006516518.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGCCCGCGC GCGCTCCCCG CCGCCTGGTC CAGGGGCCTC GGGGGACCTG GCTGCTGGGA 
AGCCTCTGGG TCTGGGTGCT GTGCGGCCTG GGGATGGCGG GCTCCCTGGG AACCCCACAG 
CCATGCCAGG CACCCCAGCA GTGGGAGGGA CGCCAGGTTC TGTACCAGCA GAGCAGCGGG 
CACAACAACC GCGCCCTGGT GTCCTACGAT GGTCTCAACC AGCGCGTGCG GGTGCTGGAC 
GAGAGGAAAG CGCTGATCCC CTGCAAGAGG CTCTCTCAAA CCTCTCCAAT CAAGCTGTCA 
CACAAGTCCA TGGAGAATGT CCTGGGCAGG ACCAGAAGCT TCAAATACCT GTCAGCTCCT 
CAGCAGCCCC AATTCTCTTC TCAGTACTCA CCTACCTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_006516581.1
CDS	389..787
Translation	MPARAPRRLVQGPRGTWLLGSLWVWVLCGLGMAGSLGTPQPCQAPQQWEGRQVLYQQSSGHNNRALVSYDGLNQRVRVLDERKALIPCKRLSQTSPIKLSHKSMENVLGRTRSFKYLSAPQQPQFSSQYSPT

Target ORF information:

RefSeq Version	XM_006516518.3
Organism	Mus musculus(house mouse)
Definition	Mus musculus ependymin related protein 1 (zebrafish) (Epdr1), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_006516518.3

ORF Insert Sequence:

ATGCCCGCGC GCGCTCCCCG CCGCCTGGTC CAGGGGCCTC GGGGGACCTG GCTGCTGGGA 
AGCCTCTGGG TCTGGGTGCT GTGCGGCCTG GGGATGGCGG GCTCCCTGGG AACCCCACAG 
CCATGCCAGG CACCCCAGCA GTGGGAGGGA CGCCAGGTTC TGTACCAGCA GAGCAGCGGG 
CACAACAACC GCGCCCTGGT GTCCTACGAT GGTCTCAACC AGCGCGTGCG GGTGCTGGAC 
GAGAGGAAAG CGCTGATCCC CTGCAAGAGG CTCTCTCAAA CCTCTCCAAT CAAGCTGTCA 
CACAAGTCCA TGGAGAATGT CCTGGGCAGG ACCAGAAGCT TCAAATACCT GTCAGCTCCT 
CAGCAGCCCC AATTCTCTTC TCAGTACTCA CCTACCTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

Epdr1 ( NM_134065.4 ) cDNA ORF clone, Mus musculus(house mouse) -> NP_598826.3 Mus musculus ependymin related protein 1 (zebrafish) (Epdr1), mRNA.

Price & Availability↑

CloneID	OMu10494
Clone ID Related Accession (Same CDS sequence)	NM_134065.4
Accession Version	NM_134065.4 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 675bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-12-26
Organism	Mus musculus(house mouse)
Product	mammalian ependymin-related protein 1 precursor
Comment	Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BB853470.1, AK046185.1, AK034083.1 and CD740844.1. On Dec 29, 2009 this sequence version replaced NM_134065.3. ##Evidence-Data-START## Transcript exon combination :: SRR1660813.67271.1, AK038733.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164131, SAMN01164139 [ECO:0000348] ##Evidence-Data-END##

ATGCCCGCGC GCGCTCCCCG CCGCCTGGTC CAGGGGCCTC GGGGGACCTG GCTGCTGGGA 
AGCCTCTGGG TCTGGGTGCT GTGCGGCCTG GGGATGGCGG GCTCCCTGGG AACCCCACAG 
CCATGCCAGG CACCCCAGCA GTGGGAGGGA CGCCAGGTTC TGTACCAGCA GAGCAGCGGG 
CACAACAACC GCGCCCTGGT GTCCTACGAT GGTCTCAACC AGCGCGTGCG GGTGCTGGAC 
GAGAGGAAAG CGCTGATCCC CTGCAAGAGA TTATTTGAAT ACATTTTACT CTATAAGGAG 
GGAGTGATGT TTCAGATTGA ACAAGCCACC AAACAGTGTG CAAAGATCCC CTTGGTGGAA 
TCCTGGGATC CTCTGGACAT TCCCCAGAAT TCTACCTTTG AAGATCAGTA CTCCATCGGA 
GGGCCTCAGG AGCAGATCCT GGTCCAGGAG TGGTCTGACA GAAGAACAGC AAGATCCTAT 
GAAACTTGGA TCGGCGTTTA TACAGCCAAG GATTGTTATC CGGTCCAGGA GACCTTCATC 
AGGAACTACA CTGTGGTCAT GTCCACGCGG TTCTTTGATG TGCAGCTAGG CATTAAGGAC 
CCCTCTGTGT TCACCCCACC AAGCACATGC CAGGCAGCGC AGCCAGAGAA GATGAGTGAC 
GGCTGCTCCT TGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_598826.3
CDS	269..943
Translation	MPARAPRRLVQGPRGTWLLGSLWVWVLCGLGMAGSLGTPQPCQAPQQWEGRQVLYQQSSGHNNRALVSYDGLNQRVRVLDERKALIPCKRLFEYILLYKEGVMFQIEQATKQCAKIPLVESWDPLDIPQNSTFEDQYSIGGPQEQILVQEWSDRRTARSYETWIGVYTAKDCYPVQETFIRNYTVVMSTRFFDVQLGIKDPSVFTPPSTCQAAQPEKMSDGCSL

Target ORF information:

RefSeq Version	NM_134065.4
Organism	Mus musculus(house mouse)
Definition	Mus musculus ependymin related protein 1 (zebrafish) (Epdr1), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_134065.4

ORF Insert Sequence:

ATGCCCGCGC GCGCTCCCCG CCGCCTGGTC CAGGGGCCTC GGGGGACCTG GCTGCTGGGA 
AGCCTCTGGG TCTGGGTGCT GTGCGGCCTG GGGATGGCGG GCTCCCTGGG AACCCCACAG 
CCATGCCAGG CACCCCAGCA GTGGGAGGGA CGCCAGGTTC TGTACCAGCA GAGCAGCGGG 
CACAACAACC GCGCCCTGGT GTCCTACGAT GGTCTCAACC AGCGCGTGCG GGTGCTGGAC 
GAGAGGAAAG CGCTGATCCC CTGCAAGAGA TTATTTGAAT ACATTTTACT CTATAAGGAG 
GGAGTGATGT TTCAGATTGA ACAAGCCACC AAACAGTGTG CAAAGATCCC CTTGGTGGAA 
TCCTGGGATC CTCTGGACAT TCCCCAGAAT TCTACCTTTG AAGATCAGTA CTCCATCGGA 
GGGCCTCAGG AGCAGATCCT GGTCCAGGAG TGGTCTGACA GAAGAACAGC AAGATCCTAT 
GAAACTTGGA TCGGCGTTTA TACAGCCAAG GATTGTTATC CGGTCCAGGA GACCTTCATC 
AGGAACTACA CTGTGGTCAT GTCCACGCGG TTCTTTGATG TGCAGCTAGG CATTAAGGAC 
CCCTCTGTGT TCACCCCACC AAGCACATGC CAGGCAGCGC AGCCAGAGAA GATGAGTGAC 
GGCTGCTCCT TGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

High-throughput discovery of novel developmental phenotypes.
Nature537(7621)508-514(2016 09)
Dickinson ME,Flenniken AM,Ji X,Teboul L,Wong MD,White JK,Meehan TF,Weninger WJ,Westerberg H,Adissu H,Baker CN,Bower L,Brown JM,Caddle LB,Chiani F,Clary D,Cleak J,Daly MJ,Denegre JM,Doe B,Dolan ME,Edie SM,Fuchs H,Gailus-Durner V,Galli A,Gambadoro A,Gallegos J,Guo S,Horner NR,Hsu CW,Johnson SJ,Kalaga S,Keith LC,Lanoue L,Lawson TN,Lek M,Mark M,Marschall S,Mason J,McElwee ML,Newbigging S,Nutter LM,Peterson KA,Ramirez-Solis R,Rowland DJ,Ryder E,Samocha KE,Seavitt JR,Selloum M,Szoke-Kovacs Z,Tamura M,Trainor AG,Tudose I,Wakana S,Warren J,Wendling O,West DB,Wong L,Yoshiki A,,,,,,,,,MacArthur DG,Tocchini-Valentini GP,Gao X,Flicek P,Bradley A,Skarnes WC,Justice MJ,Parkinson HE,Moore M,Wells S,Braun RE,Svenson KL,de Angelis MH,Herault Y,Mohun T,Mallon AM,Henkelman RM,Brown SD,Adams DJ,Lloyd KC,McKerlie C,Beaudet AL,Bu?an M,Murray SA

Extracellular matrix secretion by cardiac fibroblasts: role of microRNA-29b and microRNA-30c.
Circulation research113(10)1138-47(2013 Oct)
Abonnenc M,Nabeebaccus AA,Mayr U,Barallobre-Barreiro J,Dong X,Cuello F,Sur S,Drozdov I,Langley SR,Lu R,Stathopoulou K,Didangelos A,Yin X,Zimmermann WH,Shah AM,Zampetaki A,Mayr M

A genomic atlas of mouse hypothalamic development.
Nature neuroscience13(6)767-75(2010 Jun)
Shimogori T,Lee DA,Miranda-Angulo A,Yang Y,Wang H,Jiang L,Yoshida AC,Kataoka A,Mashiko H,Avetisyan M,Qi L,Qian J,Blackshaw S

Demonstration of lysosomal localization for the mammalian ependymin-related protein using classical approaches combined with a novel density shift method.
The Journal of biological chemistry281(46)35436-45(2006 Nov)
Della Valle MC,Sleat DE,Sohar I,Wen T,Pintar JE,Jadot M,Lobel P