cxxc1b cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	cxxc1b
Entrez Gene ID	360150
Full Name	CXXC finger protein 1b
Synonyms	LWS-2,cxxc1,opn1lw2,zgc:55527
General protein information	Preferred Names CXXC finger protein 1b Names CXXC finger protein 1 CXXC finger 1 (PHD domain) cfp1
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_200333.1	NP_956627.1	CXXC finger protein 1

Pathways from BioSystems

Homologies

Homo sapiens (human)	CXXC1	NP_001095124.1
Mus musculus (house mouse)	Cxxc1	NP_083144.1
Rattus norvegicus (Norway rat)	Cxxc1	NP_001073166.1
Xenopus tropicalis (tropical clawed frog)	cxxc1	XP_002943289.2
Danio rerio (zebrafish)	cxxc1	NP_956627.1
Drosophila melanogaster (fruit fly)	Cfp1	NP_001188570.1
Canis lupus familiaris (dog)	CXXC1	XP_005623161.1
Bos taurus (cattle)	CXXC1	NP_001019688.1
Anopheles gambiae (African malaria mosquito)	AgaP_AGAP004704	XP_318129.4
Pan troglodytes (chimpanzee)	CXXC1	XP_001154076.1
	CXXC1	XP_001093242.2
Danio rerio (zebrafish)	cxxc1l	NP_956893.1

Gene Ontology
Bibliography

Related articles in PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

Genome-wide mapping of Hif-1? binding sites in zebrafish.
Greenald D, Jeyakani J, Pelster B, Sealy I, Mathavan S, van Eeden FJ
BMC genomics16923(2015 Nov)

A network of epigenetic regulators guides developmental haematopoiesis in vivo.
Huang HT, Kathrein KL, Barton A, Gitlin Z, Huang YH, Ward TP, Hofmann O, Dibiase A, Song A, Tyekucheva S, Hide W, Zhou Y, Zon LI
Nature cell biology15(12)1516-25(2013 Dec)

A single enhancer regulating the differential expression of duplicated red-sensitive opsin genes in zebrafish.
Tsujimura T, Hosoya T, Kawamura S
PLoS genetics6(12)e1001245(2010 Dec)

Antisense targeting of CXXC finger protein 1 inhibits genomic cytosine methylation and primitive hematopoiesis in zebrafish.
Young SR, Mumaw C, Marrs JA, Skalnik DG
The Journal of biological chemistry281(48)37034-44(2006 Dec)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

These results suggest that LWS-activating region (LAR) regulates both LWS-1 and LWS-2 by enhancing their expression and that interaction of LAR with the promoters is competitive between the two genes in a developmentally restricted manner.
Title: A single enhancer regulating the differential expression of duplicated red-sensitive opsin genes in zebrafish.

CFP1 has an important role during postgastrulation development
Title: Antisense targeting of CXXC finger protein 1 inhibits genomic cytosine methylation and primitive hematopoiesis in zebrafish.

The following cxxc1b gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the cxxc1b cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa03663	NM_200333.1 Latest version!	Danio rerio CXXC finger protein 1b (cxxc1b), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$342.30 $489.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

cxxc1b ( NM_200333.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_956627.1 Danio rerio CXXC finger protein 1b (cxxc1b), mRNA.

Price & Availability↑

CloneID	ODa03663
Clone ID Related Accession (Same CDS sequence)	NM_200333.1
Accession Version	NM_200333.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1692bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-12-05
Organism	Danio rerio(zebrafish)
Product	CXXC finger protein 1
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC052918.1. ##Evidence-Data-START## Transcript exon combination :: BC052918.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END##

ATGGACAGCG AAATGTCTGA TATGGACCAG ACTCCAGGTC TGGACAACAG TATGGAAAAA 
GGAGAAAATG CTCCTCTTTA CTGCATTTGT CGAAAATCAG ACATCAACTG CTTCATGATT 
GGTTGTGACA ACTGCAATGA GTGGTTTCAC GGTCACTGTA TTAATGTCAC AGAGAAGATG 
GCCAAAGCTA TAAGAGAGTG GTACTGTCAA CAGTGTCGGG CAAGGGATCC ATCACTTTCA 
ATACGATATC GAAAGAAGAA CCGCGATAAA GATGTTGAGC CCGAGAGGGT TGAGAAACGA 
TCCAGCACTC CAGAATACAA GATTGATAAG CGACGTGGGT CTAAAGTGAA GCGCTCTGCC 
CGTATGTGTG GTGAATGTGA ACCCTGCACC AGGACAGAGG ACTGTGGTCA TTGCGACTTC 
TGTAAAGACA TGAAGAAATT TGGAGGCCCA AACAAGATTC GTCAGAAGTG TCGTCTGAGG 
CAGTGTGTTG TTCGTGCTCG GAAAATGCTG CGTGTTCGGG ATGAGGAGTT TTCGCTGCGT 
GAGAGGAAAG ACAATATAAT GCACAGGGAT AGACGATACT CAGATGATTA TGATGAGAAC 
GATATGGATC TATATGAGCA CTACAAGGAC AGAAATGCGT CATGGGGCAG TGAGGATGAT 
GATGGCCAAC TTTACAGTCC TGTTCCACGG AAGAAGGCTA TAAAAGTCAA GCACGTCAAG 
AGGAGAGACA AAAAATTTGA CAAGAAGAAA GAGTCCCGTC GCCACAAGCA GAAGCAGAAG 
CACCGTGATC GTTTGCGACA CAGTGATAGG ACAGACGGCA GACACGGAGG AGACACGCAA 
CAGTGCCTGG GGCCAAACTG CATTGAGCCG GCACGGCCAA ACTCAAAATA CTGCTCTGAG 
GACTGTGGCA TGAAGCTGGC CGCCAACCGC ATCTATGAGG TCCTCCCGCA ACGCATCCAA 
CAGTGGCAGC AAAGCCCTTG CATTGCTGAG GAGCAGGGTA AAAAACAGCT GGAGCGCATC 
CGCCGAGAGC AGCAGGCCGC ACGTATGCGC CTGGCAGAGA TGGAGCGCCG TTTCCACGAG 
CTGGAGGGCA TCATTGCCAA AGCCAAGCAG CAGCTGGTCC TTCAGGATGA GGACGTGAAT 
GAAACCGACA GTGAGGACAC AGACCTTCAG ATCTTCTGTG TGTCCTGTAG TCACCCCGTC 
AACCCCAAGG TGGCACTCAG GCATATGGAG AGATGTTATG CCAAGTATGA AAGCCAGACG 
TCTTTCGGTT CCATTTTCCC AACTAGAATA GAAGGGGCAA CAAGACTTTT CTGTGACGTG 
TACAACCCTC AGAGTAAAAC ATACTGCAAG AGACTGCAAG TTTTATGTCC AGAACATTCC 
AGAGACCCAA AGGTCACATC AGATGAGGTG TGTGGATGTC CACTAGTCCG TAACGTGTTT 
GATCCAACTG GAGATTACTG CAGGGTCTCC AAACGCAAGT GCAACAAGCA CTACTGCTGG 
GAGAAGCTCA GGCGGGCCGA GGTGGACCTG GAGCGTGTCA GAGTGTGGTA TAAACTGGAC 
GAGTTGTTTG AACAGGAACG CAATGTGAGG ACGGCCATGA CCAACAGAGC GGGACTGCTG 
GCCCTCATGC TCCACCAGAC CATCCAGCAT GACCCGCTGA CCACCGACCT CCGCAGCAGC 
AAAGACAGAT AG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_956627.1
CDS	170..1861
Translation	MDSEMSDMDQTPGLDNSMEKGENAPLYCICRKSDINCFMIGCDNCNEWFHGHCINVTEKMAKAIREWYCQQCRARDPSLSIRYRKKNRDKDVEPERVEKRSSTPEYKIDKRRGSKVKRSARMCGECEPCTRTEDCGHCDFCKDMKKFGGPNKIRQKCRLRQCVVRARKMLRVRDEEFSLRERKDNIMHRDRRYSDDYDENDMDLYEHYKDRNASWGSEDDDGQLYSPVPRKKAIKVKHVKRRDKKFDKKKESRRHKQKQKHRDRLRHSDRTDGRHGGDTQQCLGPNCIEPARPNSKYCSEDCGMKLAANRIYEVLPQRIQQWQQSPCIAEEQGKKQLERIRREQQAARMRLAEMERRFHELEGIIAKAKQQLVLQDEDVNETDSEDTDLQIFCVSCSHPVNPKVALRHMERCYAKYESQTSFGSIFPTRIEGATRLFCDVYNPQSKTYCKRLQVLCPEHSRDPKVTSDEVCGCPLVRNVFDPTGDYCRVSKRKCNKHYCWEKLRRAEVDLERVRVWYKLDELFEQERNVRTAMTNRAGLLALMLHQTIQHDPLTTDLRSSKDR

Target ORF information:

RefSeq Version	NM_200333.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio CXXC finger protein 1b (cxxc1b), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_200333.1

ORF Insert Sequence:

ATGGACAGCG AAATGTCTGA TATGGACCAG ACTCCAGGTC TGGACAACAG TATGGAAAAA 
GGAGAAAATG CTCCTCTTTA CTGCATTTGT CGAAAATCAG ACATCAACTG CTTCATGATT 
GGTTGTGACA ACTGCAATGA GTGGTTTCAC GGTCACTGTA TTAATGTCAC AGAGAAGATG 
GCCAAAGCTA TAAGAGAGTG GTACTGTCAA CAGTGTCGGG CAAGGGATCC ATCACTTTCA 
ATACGATATC GAAAGAAGAA CCGCGATAAA GATGTTGAGC CCGAGAGGGT TGAGAAACGA 
TCCAGCACTC CAGAATACAA GATTGATAAG CGACGTGGGT CTAAAGTGAA GCGCTCTGCC 
CGTATGTGTG GTGAATGTGA ACCCTGCACC AGGACAGAGG ACTGTGGTCA TTGCGACTTC 
TGTAAAGACA TGAAGAAATT TGGAGGCCCA AACAAGATTC GTCAGAAGTG TCGTCTGAGG 
CAGTGTGTTG TTCGTGCTCG GAAAATGCTG CGTGTTCGGG ATGAGGAGTT TTCGCTGCGT 
GAGAGGAAAG ACAATATAAT GCACAGGGAT AGACGATACT CAGATGATTA TGATGAGAAC 
GATATGGATC TATATGAGCA CTACAAGGAC AGAAATGCGT CATGGGGCAG TGAGGATGAT 
GATGGCCAAC TTTACAGTCC TGTTCCACGG AAGAAGGCTA TAAAAGTCAA GCACGTCAAG 
AGGAGAGACA AAAAATTTGA CAAGAAGAAA GAGTCCCGTC GCCACAAGCA GAAGCAGAAG 
CACCGTGATC GTTTGCGACA CAGTGATAGG ACAGACGGCA GACACGGAGG AGACACGCAA 
CAGTGCCTGG GGCCAAACTG CATTGAGCCG GCACGGCCAA ACTCAAAATA CTGCTCTGAG 
GACTGTGGCA TGAAGCTGGC CGCCAACCGC ATCTATGAGG TCCTCCCGCA ACGCATCCAA 
CAGTGGCAGC AAAGCCCTTG CATTGCTGAG GAGCAGGGTA AAAAACAGCT GGAGCGCATC 
CGCCGAGAGC AGCAGGCCGC ACGTATGCGC CTGGCAGAGA TGGAGCGCCG TTTCCACGAG 
CTGGAGGGCA TCATTGCCAA AGCCAAGCAG CAGCTGGTCC TTCAGGATGA GGACGTGAAT 
GAAACCGACA GTGAGGACAC AGACCTTCAG ATCTTCTGTG TGTCCTGTAG TCACCCCGTC 
AACCCCAAGG TGGCACTCAG GCATATGGAG AGATGTTATG CCAAGTATGA AAGCCAGACG 
TCTTTCGGTT CCATTTTCCC AACTAGAATA GAAGGGGCAA CAAGACTTTT CTGTGACGTG 
TACAACCCTC AGAGTAAAAC ATACTGCAAG AGACTGCAAG TTTTATGTCC AGAACATTCC 
AGAGACCCAA AGGTCACATC AGATGAGGTG TGTGGATGTC CACTAGTCCG TAACGTGTTT 
GATCCAACTG GAGATTACTG CAGGGTCTCC AAACGCAAGT GCAACAAGCA CTACTGCTGG 
GAGAAGCTCA GGCGGGCCGA GGTGGACCTG GAGCGTGTCA GAGTGTGGTA TAAACTGGAC 
GAGTTGTTTG AACAGGAACG CAATGTGAGG ACGGCCATGA CCAACAGAGC GGGACTGCTG 
GCCCTCATGC TCCACCAGAC CATCCAGCAT GACCCGCTGA CCACCGACCT CCGCAGCAGC 
AAAGACAGAT AG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

Genome-wide mapping of Hif-1? binding sites in zebrafish.
BMC genomics16923(2015 Nov)
Greenald D,Jeyakani J,Pelster B,Sealy I,Mathavan S,van Eeden FJ

A network of epigenetic regulators guides developmental haematopoiesis in vivo.
Nature cell biology15(12)1516-25(2013 Dec)
Huang HT,Kathrein KL,Barton A,Gitlin Z,Huang YH,Ward TP,Hofmann O,Dibiase A,Song A,Tyekucheva S,Hide W,Zhou Y,Zon LI

A single enhancer regulating the differential expression of duplicated red-sensitive opsin genes in zebrafish.
PLoS genetics6(12)e1001245(2010 Dec)
Tsujimura T,Hosoya T,Kawamura S

Antisense targeting of CXXC finger protein 1 inhibits genomic cytosine methylation and primitive hematopoiesis in zebrafish.
The Journal of biological chemistry281(48)37034-44(2006 Dec)
Young SR,Mumaw C,Marrs JA,Skalnik DG