ORF » Species Summary » Populus trichocarpa » POPTR_0015s01320g cDNA ORF clone

POPTR_0015s01320g cDNA ORF clone, Populus trichocarpa(Populus balsamifera subsp. trichocarpa)

The following POPTR_0015s01320g gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the POPTR_0015s01320g cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
OPa31624 XM_002321951.2
Latest version!		 Populus trichocarpa hypothetical protein (POPTR_0015s01320g) mRNA, complete cds. pcDNA3.1-C-(k)DYK or customized vector 7-9 $342.30
$489.00
OPa444903 XM_024587028.1
Latest version!		 Populus trichocarpa nephrocystin-3 (LOC7464534), transcript variant X1, mRNA. pcDNA3.1-C-(k)DYK or customized vector 14-16 $307.30
$439.00
OPa444904 XM_002321951.3
Latest version!		 Populus trichocarpa nephrocystin-3 (LOC7464534), transcript variant X2, mRNA. pcDNA3.1-C-(k)DYK or customized vector 14-16 $307.30
$439.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

  • Reference Sequences (Refseq)
    POPTR_0015s01320g ( XM_002321951.2 ) cDNA ORF clone, Populus trichocarpa(Populus balsamifera subsp. trichocarpa) -> XP_002321987.1 Populus trichocarpa hypothetical protein (POPTR_0015s01320g) mRNA, complete cds.
    Price & Availability↑
    CloneID OPa31624
    Clone ID Related Accession (Same CDS sequence) XM_002321951.2
    Accession Version XM_002321951.2 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1740bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 2013-12-30
    Organism Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
    Product hypothetical protein
    Comment Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_008481). On Dec 16, 2013 this sequence version replaced XM_002321951.1. 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    ATGGCAGTTT CCCTCCTCCA TCACCCTCCT TTAAGCAACC AACGGATAAC TCAAGCGTTT 
    GTAGACTTGA ATTCAAGGTC TTTGCAGAGA GGCATCACTT GCTTCTCAAT TTGTCTCCAG 
    AAGCAGAAAT GCAGCATCGA ACTATACATG ATACCCACTA CAACAGTTGC TCGACACTGG 
    ATGTTGAAAA CTTTTGCTTC AGCTGGCTCA TTAAATGCAG AAGTGGAATG TCAAGAAAAT 
    CAAATTTCCT CTGGTTTCTC AACTTCTAAT GATTTCGGGA GGTCTAAAAC AGTGGCTGAC 
    AGCTCAAGTA AACCCTCAGA TGGTGTGAAA GATTTTGAGA GACAGTTGCA AGAGTTGTTT 
    GATGAAGTCA AAATGATGAT CAAGATGGGA AACAAAAATG ATGCCATGGA TCTACTTCAA 
    GCAAATTATG AATTTGTCAA AGAGCAGATC AATGCAGGTT CTAGAGGCAT TGAAGAAGCC 
    GCTACTCTTG ACATCATAGC CTTGGGATAC ATGGCTATTG GAGACTTAAA GTCTGTTGGG 
    TTTATCCTGA ACAAGTTGGA CGAAGTTGTT GAGCGTCTAA CCGATGACGA ACCTCTTCTG 
    GATTCAGTAC TAATACATAT GGGAAGCATG TATTCAGCTT TGGGGAAGTT TGAAAAATCC 
    ATGCTTGTAT ATCAAAGAGT TATTGCTATT CTAGAGAGAA TACATGGGAA AGGCAGTGCT 
    TTTCTTGTCT CACCATTGTT GGGGATGGCA AAAATTCTGG GTTCGATTGG AAAAGCTACC 
    AAAGCGATAG AAGTCTACCA ACGTGTGATA AGTATTCTGG AATCTAGCAG AGGAGCTGAA 
    AGCAAAGATT TGGTAGTGCC TTTATCTGGT CTTGGCAATC TTTTGATCAA GGAAGGAAGA 
    GCCACTGATG CAGAAAGTCT TTTTAATAGA ATTTTAAGCA TATATAAGGA GTCATATGGT 
    GAATATGATG GAAGATTTGG CATGGCTTTG TGTTCGGTAG CCCATGTGAA GTGTGCAACA 
    GGGAATGCAG AAGAAGCTAT TAATTTATAT AGAAAGGCTC TTCAAGTCAT CAAGGATGCA 
    GACTACATGG CTGTAGATGA CAGTATCATG GAGAGGATGA GGATAGATTT GGCTGAATTG 
    CTTCACGTTG TAGGAAGAGG AAATGAAGGC CGAGAGCTAC TAGAAGAATG CTTGTTGATC 
    ACTGAAAAGT ATAAAGGAAA AGATCATCCA AGCTCAGTTA CACACCTTAT TAATCTTGCA 
    ACCTCCTACT CACAATCAAA GAACTATGTC CAGGCTGAGC GCTTGTTGAG GACAAGTTTG 
    GAGATTATGA TGAAAAGTGT GAGACCGGAT GATTCATCCA TCACCTTCCC GATGCTGCAC 
    CTCGCAGTGA CTCTCTACCG TTTGAATCAG GATGAAGAAG CGGAGCAACT CACACTAGAG 
    GTTCTGCACA TTCGTGAGAA GGCATTTGGA AAAGATTCTC TTCCTGTCGG GGAGGCTCTG 
    GACTGTCTGG TTTCCATCCA GACCAGATTA GGGAAGCCAG AAGCTGAGTT GTTGGATCTT 
    CTAAAACAAG TTCTAAAGAT TCAAGAAAAA GAGTTTGGCT ATGAGAGTGA AGAGGTTATG 
    AGAACCCTAA AGAAAATTGT ATTCTACTTG GATAAAACAG GAAGGAAGGA TGAGAAATTT 
    TCCATGCAGA AAAGATTATC TGTGCTCAGG ATGAAATATA ATCAAATGAT GCAATATTAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_002321987.1
    CDS96..1835
    Translation

    Target ORF information:

    RefSeq Version XM_002321951.2
    Organism Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
    Definition Populus trichocarpa hypothetical protein (POPTR_0015s01320g) mRNA, complete cds.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_002321951.2

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    ATGGCAGTTT CCCTCCTCCA TCACCCTCCT TTAAGCAACC AACGGATAAC TCAAGCGTTT 
    GTAGACTTGA ATTCAAGGTC TTTGCAGAGA GGCATCACTT GCTTCTCAAT TTGTCTCCAG 
    AAGCAGAAAT GCAGCATCGA ACTATACATG ATACCCACTA CAACAGTTGC TCGACACTGG 
    ATGTTGAAAA CTTTTGCTTC AGCTGGCTCA TTAAATGCAG AAGTGGAATG TCAAGAAAAT 
    CAAATTTCCT CTGGTTTCTC AACTTCTAAT GATTTCGGGA GGTCTAAAAC AGTGGCTGAC 
    AGCTCAAGTA AACCCTCAGA TGGTGTGAAA GATTTTGAGA GACAGTTGCA AGAGTTGTTT 
    GATGAAGTCA AAATGATGAT CAAGATGGGA AACAAAAATG ATGCCATGGA TCTACTTCAA 
    GCAAATTATG AATTTGTCAA AGAGCAGATC AATGCAGGTT CTAGAGGCAT TGAAGAAGCC 
    GCTACTCTTG ACATCATAGC CTTGGGATAC ATGGCTATTG GAGACTTAAA GTCTGTTGGG 
    TTTATCCTGA ACAAGTTGGA CGAAGTTGTT GAGCGTCTAA CCGATGACGA ACCTCTTCTG 
    GATTCAGTAC TAATACATAT GGGAAGCATG TATTCAGCTT TGGGGAAGTT TGAAAAATCC 
    ATGCTTGTAT ATCAAAGAGT TATTGCTATT CTAGAGAGAA TACATGGGAA AGGCAGTGCT 
    TTTCTTGTCT CACCATTGTT GGGGATGGCA AAAATTCTGG GTTCGATTGG AAAAGCTACC 
    AAAGCGATAG AAGTCTACCA ACGTGTGATA AGTATTCTGG AATCTAGCAG AGGAGCTGAA 
    AGCAAAGATT TGGTAGTGCC TTTATCTGGT CTTGGCAATC TTTTGATCAA GGAAGGAAGA 
    GCCACTGATG CAGAAAGTCT TTTTAATAGA ATTTTAAGCA TATATAAGGA GTCATATGGT 
    GAATATGATG GAAGATTTGG CATGGCTTTG TGTTCGGTAG CCCATGTGAA GTGTGCAACA 
    GGGAATGCAG AAGAAGCTAT TAATTTATAT AGAAAGGCTC TTCAAGTCAT CAAGGATGCA 
    GACTACATGG CTGTAGATGA CAGTATCATG GAGAGGATGA GGATAGATTT GGCTGAATTG 
    CTTCACGTTG TAGGAAGAGG AAATGAAGGC CGAGAGCTAC TAGAAGAATG CTTGTTGATC 
    ACTGAAAAGT ATAAAGGAAA AGATCATCCA AGCTCAGTTA CACACCTTAT TAATCTTGCA 
    ACCTCCTACT CACAATCAAA GAACTATGTC CAGGCTGAGC GCTTGTTGAG GACAAGTTTG 
    GAGATTATGA TGAAAAGTGT GAGACCGGAT GATTCATCCA TCACCTTCCC GATGCTGCAC 
    CTCGCAGTGA CTCTCTACCG TTTGAATCAG GATGAAGAAG CGGAGCAACT CACACTAGAG 
    GTTCTGCACA TTCGTGAGAA GGCATTTGGA AAAGATTCTC TTCCTGTCGG GGAGGCTCTG 
    GACTGTCTGG TTTCCATCCA GACCAGATTA GGGAAGCCAG AAGCTGAGTT GTTGGATCTT 
    CTAAAACAAG TTCTAAAGAT TCAAGAAAAA GAGTTTGGCT ATGAGAGTGA AGAGGTTATG 
    AGAACCCTAA AGAAAATTGT ATTCTACTTG GATAAAACAG GAAGGAAGGA TGAGAAATTT 
    TCCATGCAGA AAAGATTATC TGTGCTCAGG ATGAAATATA ATCAAATGAT GCAATATTAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    POPTR_0015s01320g ( XM_024587028.1 ) cDNA ORF clone, Populus trichocarpa(Populus balsamifera subsp. trichocarpa) -> XP_024442796.1 Populus trichocarpa nephrocystin-3 (LOC7464534), transcript variant X1, mRNA.
    Price & Availability↑
    CloneID OPa444903
    Clone ID Related Accession (Same CDS sequence) XM_024587028.1
    Accession Version XM_024587028.1 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1743bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 2018-04-08
    Organism Populus trichocarpa(black cottonwood)
    Product nephrocystin-3 isoform X1
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037299.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    ATGGCAGTTT CCCTCCTCCA TCACCCTCCT TTAAGCAACC AACGGATAAC TCAAGCGTTT 
    GTAGACTTGA ATTCAAGGTC TTTGCAGAGA GGCATCACTT GCTTCTCAAT TTGTCTCCAG 
    AAGCAGAAAT GCAGCATCGA ACTATACATG ATACCCACTA CAACAGTTGC TCGACACTGG 
    ATGTTGAAAA CTTTTGCTTC AGCTGGCTCA TTAAATGCAG AAGTGGAATG TCAAGAAAAT 
    CAAATTTCCT CTGGTTTCTC AACTTCTAAT GATTTCGGGA GCAGGTCTAA AACAGTGGCT 
    GACAGCTCAA GTAAACCCTC AGATGGTGTG AAAGATTTTG AGAGACAGTT GCAAGAGTTG 
    TTTGATGAAG TCAAAATGAT GATCAAGATG GGAAACAAAA ATGATGCCAT GGATCTACTT 
    CAAGCAAATT ATGAATTTGT CAAAGAGCAG ATCAATGCAG GTTCTAGAGG CATTGAAGAA 
    GCCGCTACTC TTGACATCAT AGCCTTGGGA TACATGGCTA TTGGAGACTT AAAGTCTGTT 
    GGGTTTATCC TGAACAAGTT GGACGAAGTT GTTGAGCGTC TAACAGATGA CGAACCTCTT 
    CTGGATTCAG TACTAATACA TATGGGAAGC ATGTATTCAG CTTTGGGGAA GTTTGAAAAA 
    TCCATGCTTG TATATCAAAG AGTTATTGCT ATTCTAGAGA GAATACATGG GAAAGGCAGT 
    GCTTTTCTTG TCTCACCATT GTTGGGGATG GCAAAAATTC TGGGTTCGAT TGGAAAAGCT 
    ACCAAAGCGA TAGAAGTCTA CCAACGTGTG ATAAGTATTC TGGAATCTAG CAGAGGAGCT 
    GAAAGCAAAG ATTTGGTAGT GCCTTTATCT GGTCTTGGCA ATCTTTTGAT CAAGGAAGGA 
    AGAGCCACAG ATGCAGAAAG TCTTTTTAAT AGAATTTTAA GCATATATAA GGAGTCATAT 
    GGTGAATATG ATGGAAGATT TGGCATGGCT TTGTGTTCGG TAGCCCATGT GAAGTGTGCA 
    ACAGGGAATG CAGAAGAAGC TATTAATTTA TATAGAAAGG CTCTTCAAGT CATCAAGGAT 
    GCAGACTACA TGGCTGTAGA TGACAGTATC ATGGAGAGGA TGAGGATAGA TTTGGCTGAA 
    TTGCTTCACG TTGTAGGAAG AGGAAACGAA GGCCGAGAGC TACTAGAAGA ATGCTTGTTG 
    ATCACTGAAA AGTATAAAGG AAAAGATCAT CCAAGCTCAG TTACACACCT TATTAATCTT 
    GCAACCTCCT ACTCTCAATC AAAGAACTAT GTCCAGGCTG AGCGCTTGTT GAGGACAAGT 
    TTGGAGATTA TGATGAAAAG TGTGAGACCG GATGATTCAT CCATCACCTT CCCGATGCTG 
    CACCTCGCAG TGACTCTCTA CCGTTTGAAT CAGGATGAAG AAGCGGAGCA ACTCACACTA 
    GAGGTTCTGC ACATTCGTGA GAAGGCATTT GGAAAAGATT CTCTTCCTGT CGGGGAGGCT 
    CTGGACTGTC TGGTTTCCAT CCAGACCAGA TTAGGGAAGC CAGAAGGTGA GTTGTTGGAT 
    CTTCTAAAAC AAGTTCTAAA GATTCAAGAA AAAGAGTTTG GCTATGAGAG TGAAGAGGTT 
    ATGAGAACCC TAAAGAAAAT TGTATTCTAC TTGGATAAAA CAGGAAGGAA GGATGAGAAA 
    TTTTCCATGC AGAAAAGATT ATCTGTGCTC AGGATGAAAT ATAATCAAAT GATGCAATAT 
    TAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_024442796.1
    CDS112..1854
    Translation

    Target ORF information:

    RefSeq Version XM_024587028.1
    Organism Populus trichocarpa(black cottonwood)
    Definition Populus trichocarpa nephrocystin-3 (LOC7464534), transcript variant X1, mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_024587028.1

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    ATGGCAGTTT CCCTCCTCCA TCACCCTCCT TTAAGCAACC AACGGATAAC TCAAGCGTTT 
    GTAGACTTGA ATTCAAGGTC TTTGCAGAGA GGCATCACTT GCTTCTCAAT TTGTCTCCAG 
    AAGCAGAAAT GCAGCATCGA ACTATACATG ATACCCACTA CAACAGTTGC TCGACACTGG 
    ATGTTGAAAA CTTTTGCTTC AGCTGGCTCA TTAAATGCAG AAGTGGAATG TCAAGAAAAT 
    CAAATTTCCT CTGGTTTCTC AACTTCTAAT GATTTCGGGA GCAGGTCTAA AACAGTGGCT 
    GACAGCTCAA GTAAACCCTC AGATGGTGTG AAAGATTTTG AGAGACAGTT GCAAGAGTTG 
    TTTGATGAAG TCAAAATGAT GATCAAGATG GGAAACAAAA ATGATGCCAT GGATCTACTT 
    CAAGCAAATT ATGAATTTGT CAAAGAGCAG ATCAATGCAG GTTCTAGAGG CATTGAAGAA 
    GCCGCTACTC TTGACATCAT AGCCTTGGGA TACATGGCTA TTGGAGACTT AAAGTCTGTT 
    GGGTTTATCC TGAACAAGTT GGACGAAGTT GTTGAGCGTC TAACAGATGA CGAACCTCTT 
    CTGGATTCAG TACTAATACA TATGGGAAGC ATGTATTCAG CTTTGGGGAA GTTTGAAAAA 
    TCCATGCTTG TATATCAAAG AGTTATTGCT ATTCTAGAGA GAATACATGG GAAAGGCAGT 
    GCTTTTCTTG TCTCACCATT GTTGGGGATG GCAAAAATTC TGGGTTCGAT TGGAAAAGCT 
    ACCAAAGCGA TAGAAGTCTA CCAACGTGTG ATAAGTATTC TGGAATCTAG CAGAGGAGCT 
    GAAAGCAAAG ATTTGGTAGT GCCTTTATCT GGTCTTGGCA ATCTTTTGAT CAAGGAAGGA 
    AGAGCCACAG ATGCAGAAAG TCTTTTTAAT AGAATTTTAA GCATATATAA GGAGTCATAT 
    GGTGAATATG ATGGAAGATT TGGCATGGCT TTGTGTTCGG TAGCCCATGT GAAGTGTGCA 
    ACAGGGAATG CAGAAGAAGC TATTAATTTA TATAGAAAGG CTCTTCAAGT CATCAAGGAT 
    GCAGACTACA TGGCTGTAGA TGACAGTATC ATGGAGAGGA TGAGGATAGA TTTGGCTGAA 
    TTGCTTCACG TTGTAGGAAG AGGAAACGAA GGCCGAGAGC TACTAGAAGA ATGCTTGTTG 
    ATCACTGAAA AGTATAAAGG AAAAGATCAT CCAAGCTCAG TTACACACCT TATTAATCTT 
    GCAACCTCCT ACTCTCAATC AAAGAACTAT GTCCAGGCTG AGCGCTTGTT GAGGACAAGT 
    TTGGAGATTA TGATGAAAAG TGTGAGACCG GATGATTCAT CCATCACCTT CCCGATGCTG 
    CACCTCGCAG TGACTCTCTA CCGTTTGAAT CAGGATGAAG AAGCGGAGCA ACTCACACTA 
    GAGGTTCTGC ACATTCGTGA GAAGGCATTT GGAAAAGATT CTCTTCCTGT CGGGGAGGCT 
    CTGGACTGTC TGGTTTCCAT CCAGACCAGA TTAGGGAAGC CAGAAGGTGA GTTGTTGGAT 
    CTTCTAAAAC AAGTTCTAAA GATTCAAGAA AAAGAGTTTG GCTATGAGAG TGAAGAGGTT 
    ATGAGAACCC TAAAGAAAAT TGTATTCTAC TTGGATAAAA CAGGAAGGAA GGATGAGAAA 
    TTTTCCATGC AGAAAAGATT ATCTGTGCTC AGGATGAAAT ATAATCAAAT GATGCAATAT 
    TAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    POPTR_0015s01320g ( XM_002321951.3 ) cDNA ORF clone, Populus trichocarpa(Populus balsamifera subsp. trichocarpa) -> XP_002321987.2 Populus trichocarpa nephrocystin-3 (LOC7464534), transcript variant X2, mRNA.
    Price & Availability↑
    CloneID OPa444904
    Clone ID Related Accession (Same CDS sequence) XM_002321951.3
    Accession Version XM_002321951.3 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1740bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 2018-04-08
    Organism Populus trichocarpa(black cottonwood)
    Product nephrocystin-3 isoform X2
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037299.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Apr 9, 2018 this sequence version replaced XM_002321951.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    ATGGCAGTTT CCCTCCTCCA TCACCCTCCT TTAAGCAACC AACGGATAAC TCAAGCGTTT 
    GTAGACTTGA ATTCAAGGTC TTTGCAGAGA GGCATCACTT GCTTCTCAAT TTGTCTCCAG 
    AAGCAGAAAT GCAGCATCGA ACTATACATG ATACCCACTA CAACAGTTGC TCGACACTGG 
    ATGTTGAAAA CTTTTGCTTC AGCTGGCTCA TTAAATGCAG AAGTGGAATG TCAAGAAAAT 
    CAAATTTCCT CTGGTTTCTC AACTTCTAAT GATTTCGGGA GGTCTAAAAC AGTGGCTGAC 
    AGCTCAAGTA AACCCTCAGA TGGTGTGAAA GATTTTGAGA GACAGTTGCA AGAGTTGTTT 
    GATGAAGTCA AAATGATGAT CAAGATGGGA AACAAAAATG ATGCCATGGA TCTACTTCAA 
    GCAAATTATG AATTTGTCAA AGAGCAGATC AATGCAGGTT CTAGAGGCAT TGAAGAAGCC 
    GCTACTCTTG ACATCATAGC CTTGGGATAC ATGGCTATTG GAGACTTAAA GTCTGTTGGG 
    TTTATCCTGA ACAAGTTGGA CGAAGTTGTT GAGCGTCTAA CAGATGACGA ACCTCTTCTG 
    GATTCAGTAC TAATACATAT GGGAAGCATG TATTCAGCTT TGGGGAAGTT TGAAAAATCC 
    ATGCTTGTAT ATCAAAGAGT TATTGCTATT CTAGAGAGAA TACATGGGAA AGGCAGTGCT 
    TTTCTTGTCT CACCATTGTT GGGGATGGCA AAAATTCTGG GTTCGATTGG AAAAGCTACC 
    AAAGCGATAG AAGTCTACCA ACGTGTGATA AGTATTCTGG AATCTAGCAG AGGAGCTGAA 
    AGCAAAGATT TGGTAGTGCC TTTATCTGGT CTTGGCAATC TTTTGATCAA GGAAGGAAGA 
    GCCACAGATG CAGAAAGTCT TTTTAATAGA ATTTTAAGCA TATATAAGGA GTCATATGGT 
    GAATATGATG GAAGATTTGG CATGGCTTTG TGTTCGGTAG CCCATGTGAA GTGTGCAACA 
    GGGAATGCAG AAGAAGCTAT TAATTTATAT AGAAAGGCTC TTCAAGTCAT CAAGGATGCA 
    GACTACATGG CTGTAGATGA CAGTATCATG GAGAGGATGA GGATAGATTT GGCTGAATTG 
    CTTCACGTTG TAGGAAGAGG AAACGAAGGC CGAGAGCTAC TAGAAGAATG CTTGTTGATC 
    ACTGAAAAGT ATAAAGGAAA AGATCATCCA AGCTCAGTTA CACACCTTAT TAATCTTGCA 
    ACCTCCTACT CTCAATCAAA GAACTATGTC CAGGCTGAGC GCTTGTTGAG GACAAGTTTG 
    GAGATTATGA TGAAAAGTGT GAGACCGGAT GATTCATCCA TCACCTTCCC GATGCTGCAC 
    CTCGCAGTGA CTCTCTACCG TTTGAATCAG GATGAAGAAG CGGAGCAACT CACACTAGAG 
    GTTCTGCACA TTCGTGAGAA GGCATTTGGA AAAGATTCTC TTCCTGTCGG GGAGGCTCTG 
    GACTGTCTGG TTTCCATCCA GACCAGATTA GGGAAGCCAG AAGGTGAGTT GTTGGATCTT 
    CTAAAACAAG TTCTAAAGAT TCAAGAAAAA GAGTTTGGCT ATGAGAGTGA AGAGGTTATG 
    AGAACCCTAA AGAAAATTGT ATTCTACTTG GATAAAACAG GAAGGAAGGA TGAGAAATTT 
    TCCATGCAGA AAAGATTATC TGTGCTCAGG ATGAAATATA ATCAAATGAT GCAATATTAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_002321987.2
    CDS112..1851
    Translation

    Target ORF information:

    RefSeq Version XM_002321951.3
    Organism Populus trichocarpa(black cottonwood)
    Definition Populus trichocarpa nephrocystin-3 (LOC7464534), transcript variant X2, mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_002321951.3

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    ATGGCAGTTT CCCTCCTCCA TCACCCTCCT TTAAGCAACC AACGGATAAC TCAAGCGTTT 
    GTAGACTTGA ATTCAAGGTC TTTGCAGAGA GGCATCACTT GCTTCTCAAT TTGTCTCCAG 
    AAGCAGAAAT GCAGCATCGA ACTATACATG ATACCCACTA CAACAGTTGC TCGACACTGG 
    ATGTTGAAAA CTTTTGCTTC AGCTGGCTCA TTAAATGCAG AAGTGGAATG TCAAGAAAAT 
    CAAATTTCCT CTGGTTTCTC AACTTCTAAT GATTTCGGGA GGTCTAAAAC AGTGGCTGAC 
    AGCTCAAGTA AACCCTCAGA TGGTGTGAAA GATTTTGAGA GACAGTTGCA AGAGTTGTTT 
    GATGAAGTCA AAATGATGAT CAAGATGGGA AACAAAAATG ATGCCATGGA TCTACTTCAA 
    GCAAATTATG AATTTGTCAA AGAGCAGATC AATGCAGGTT CTAGAGGCAT TGAAGAAGCC 
    GCTACTCTTG ACATCATAGC CTTGGGATAC ATGGCTATTG GAGACTTAAA GTCTGTTGGG 
    TTTATCCTGA ACAAGTTGGA CGAAGTTGTT GAGCGTCTAA CAGATGACGA ACCTCTTCTG 
    GATTCAGTAC TAATACATAT GGGAAGCATG TATTCAGCTT TGGGGAAGTT TGAAAAATCC 
    ATGCTTGTAT ATCAAAGAGT TATTGCTATT CTAGAGAGAA TACATGGGAA AGGCAGTGCT 
    TTTCTTGTCT CACCATTGTT GGGGATGGCA AAAATTCTGG GTTCGATTGG AAAAGCTACC 
    AAAGCGATAG AAGTCTACCA ACGTGTGATA AGTATTCTGG AATCTAGCAG AGGAGCTGAA 
    AGCAAAGATT TGGTAGTGCC TTTATCTGGT CTTGGCAATC TTTTGATCAA GGAAGGAAGA 
    GCCACAGATG CAGAAAGTCT TTTTAATAGA ATTTTAAGCA TATATAAGGA GTCATATGGT 
    GAATATGATG GAAGATTTGG CATGGCTTTG TGTTCGGTAG CCCATGTGAA GTGTGCAACA 
    GGGAATGCAG AAGAAGCTAT TAATTTATAT AGAAAGGCTC TTCAAGTCAT CAAGGATGCA 
    GACTACATGG CTGTAGATGA CAGTATCATG GAGAGGATGA GGATAGATTT GGCTGAATTG 
    CTTCACGTTG TAGGAAGAGG AAACGAAGGC CGAGAGCTAC TAGAAGAATG CTTGTTGATC 
    ACTGAAAAGT ATAAAGGAAA AGATCATCCA AGCTCAGTTA CACACCTTAT TAATCTTGCA 
    ACCTCCTACT CTCAATCAAA GAACTATGTC CAGGCTGAGC GCTTGTTGAG GACAAGTTTG 
    GAGATTATGA TGAAAAGTGT GAGACCGGAT GATTCATCCA TCACCTTCCC GATGCTGCAC 
    CTCGCAGTGA CTCTCTACCG TTTGAATCAG GATGAAGAAG CGGAGCAACT CACACTAGAG 
    GTTCTGCACA TTCGTGAGAA GGCATTTGGA AAAGATTCTC TTCCTGTCGG GGAGGCTCTG 
    GACTGTCTGG TTTCCATCCA GACCAGATTA GGGAAGCCAG AAGGTGAGTT GTTGGATCTT 
    CTAAAACAAG TTCTAAAGAT TCAAGAAAAA GAGTTTGGCT ATGAGAGTGA AGAGGTTATG 
    AGAACCCTAA AGAAAATTGT ATTCTACTTG GATAAAACAG GAAGGAAGGA TGAGAAATTT 
    TCCATGCAGA AAAGATTATC TGTGCTCAGG ATGAAATATA ATCAAATGAT GCAATATTAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

  • PubMed

    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science (New York, N.Y.)313(5793)1596-604(2006 Sep)
    Tuskan GA,Difazio S,Jansson S,Bohlmann J,Grigoriev I,Hellsten U,Putnam N,Ralph S,Rombauts S,Salamov A,Schein J,Sterck L,Aerts A,Bhalerao RR,Bhalerao RP,Blaudez D,Boerjan W,Brun A,Brunner A,Busov V,Campbell M,Carlson J,Chalot M,Chapman J,Chen GL,Cooper D,Coutinho PM,Couturier J,Covert S,Cronk Q,Cunningham R,Davis J,Degroeve S,D?jardin A,Depamphilis C,Detter J,Dirks B,Dubchak I,Duplessis S,Ehlting J,Ellis B,Gendler K,Goodstein D,Gribskov M,Grimwood J,Groover A,Gunter L,Hamberger B,Heinze B,Helariutta Y,Henrissat B,Holligan D,Holt R,Huang W,Islam-Faridi N,Jones S,Jones-Rhoades M,Jorgensen R,Joshi C,Kangasj?rvi J,Karlsson J,Kelleher C,Kirkpatrick R,Kirst M,Kohler A,Kalluri U,Larimer F,Leebens-Mack J,Lepl? JC,Locascio P,Lou Y,Lucas S,Martin F,Montanini B,Napoli C,Nelson DR,Nelson C,Nieminen K,Nilsson O,Pereda V,Peter G,Philippe R,Pilate G,Poliakov A,Razumovskaya J,Richardson P,Rinaldi C,Ritland K,Rouz? P,Ryaboy D,Schmutz J,Schrader J,Segerman B,Shin H,Siddiqui A,Sterky F,Terry A,Tsai CJ,Uberbacher E,Unneberg P,Vahala J,Wall K,Wessler S,Yang G,Yin T,Douglas C,Marra M,Sandberg G,Van de Peer Y,Rokhsar D


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