ptx3b cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	ptx3b
Entrez Gene ID	566001
Full Name	pentraxin 3, long b
Synonyms	si:dkey-23h1.5
General protein information	Preferred Names pentraxin 3, long b Names pentraxin-related protein PTX3
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
XM_689266.5	XP_694358.3	pentraxin-related protein PTX3
XM_689266.6	XP_694358.3	pentraxin-related protein PTX3

Pathways from BioSystems

Homologies

Pan troglodytes (chimpanzee)	PTX3	XP_516838.2
Canis lupus familiaris (dog)	PTX3	XP_003433222.1
Bos taurus (cattle)	PTX3	NP_001069727.1
Mus musculus (house mouse)	Ptx3	NP_033013.3
Rattus norvegicus (Norway rat)	Ptx3	NP_001103006.1
Xenopus tropicalis (tropical clawed frog)	ptx3	XP_002933289.2
Homo sapiens (human)	PTX3	NP_002843.2
	PTX3	XP_001103515.1
Danio rerio (zebrafish)	LOC101887125	XP_005159288.1
Gallus gallus (chicken)	PTX3	NP_001017413.1
Danio rerio (zebrafish)	ptx3b	XP_694358.3

Gene Ontology

The following ptx3b gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the ptx3b cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)
ODa07243	XM_689266.6 Latest version!	Danio rerio pentraxin 3, long b (ptx3b), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$258.30 $369.00
View Old Accession Versions >>
ODa07243	XM_689266.5	Danio rerio pentraxin 3, long b (ptx3b), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$258.30 $369.00
Hide Old Accession Versions >>

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

ptx3b ( XM_689266.5 ) cDNA ORF clone, Danio rerio(zebrafish) -> XP_694358.3 Danio rerio pentraxin 3, long b (ptx3b), mRNA.

Price & Availability↑

CloneID	ODa07243
Clone ID Related Accession (Same CDS sequence)	XM_689266.5 , XM_689266.6
Accession Version	XM_689266.5	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1323bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-06-23
Organism	Danio rerio(Zebrafish)
Product	pentraxin-related protein PTX3
Comment	MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007113.6) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_689266.4. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGCAGAGAG AGACTAACGT ACACAGAATG TATGCGCCCG GGGCCGTGCT GGCCCTCTGC 
CTGCCCTGCT TTTTAACTGG GATCGTGTTC AGTTATGAGT ATGGAGAGGA TTACTCTGAT 
TCCTACTATA ACGAGATCTC CAATGGTGAC CGCGTGCAAT CAGAAGGCAC TCAAATCCCC 
TGTCCACCCC AGGACCTCTC CCGCTGGGAC AAACTCTTCA TTATGCTGGA AGACTCTCAG 
ATGAAGCAAA ACATGCTCCA TTGGCAGACT GAAGACATGG TCAAGAAAGA GATGGACTCT 
ATACGGAAGG ATCTCCATAA GCTTAACAAT AACAAAGCAT GTGTCCAGGC TTCAGAAAAC 
ACTTGCAAGT GCATAAGCGA ACAGATGAAC CGCAATATAA AGCAAGTTAT GGAGCAGCTC 
AGAGAGGCTG CAGATTCTCA TCAAGCCCAA AACAATGAGA CGCTGCAGCA GCTCATTCAG 
CTGAGCCGAC ATCAGGCTTC CCGTCTCGCC AAACTGGAGT TAGGAGCAGG ACTAGGGCAG 
GTGGCCGTGA AGTCTTTTTC TGTTTATCCA AAAGAACAAG AAGCAAGCAG TGCAGATGGT 
GGGAAGTTGG AGAGAGCACT AATGGCCGCC ACTGCTGATC TCCAAAGGGT GCATGCCCAA 
CTGGCCCTTT TCCAGAGAGC AACCGTAAAC CGCTATCTGC CCTCAGGGTG TGAGATGGCT 
TTGTTATTTC CAATGCGCTC CAAGCACATC TTCGCAGAAG TAACACCCTC CATGTCCATG 
TCTCTACAAA CATTCACTCT CTGTCTGTGG GCCAAAGTGA CTCAGGCTCT TAATAAAACA 
GTTCTTTTCT CATACGGAAG CAAGATAAAC CCTCAAGAGC TCCAGCTTCT TCTGTCAGGT 
CGCTCACTAC TCCTCAAGGT GGGCGGTGAC ACTGGTCTAG TGGAAGCTCT TGGTGTAGTA 
ACAGATGGGC AGTGGGGACA CTTTTGCGCC ACTTGGAGCT CAAAGCAGGG TTTGGCTGAT 
TTGTGGGTGA ATGGAGAAAG TGTTGCCAGA GTGTCTGGAG TAGCAGAAGG CCACGAACTG 
CCCAGTGATG GGTTCATTTT GCTTGGACAG GAGATCAGCC GGTCGGGAAT TTACAGAGAT 
CTGGTCTCAA CTGTAGTCTT CACCGGGAAG ATGACAGGGG TGAACATGTG GGACCACGTG 
CTGGAGGCGG AGAGGATTAA AGAGTACGCC AATCAGGACG GGTCATGTGA TAGCAGAGGG 
AATGTGATTG GATGGGGCAT TTCAGAGATC GTTCCAAATG GTGGAGCTCA ATATATCAAC 
TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_694358.3
CDS	176..1498
Translation	MQRETNVHRMYAPGAVLALCLPCFLTGIVFSYEYGEDYSDSYYNEISNGDRVQSEGTQIPCPPQDLSRWDKLFIMLEDSQMKQNMLHWQTEDMVKKEMDSIRKDLHKLNNNKACVQASENTCKCISEQMNRNIKQVMEQLREAADSHQAQNNETLQQLIQLSRHQASRLAKLELGAGLGQVAVKSFSVYPKEQEASSADGGKLERALMAATADLQRVHAQLALFQRATVNRYLPSGCEMALLFPMRSKHIFAEVTPSMSMSLQTFTLCLWAKVTQALNKTVLFSYGSKINPQELQLLLSGRSLLLKVGGDTGLVEALGVVTDGQWGHFCATWSSKQGLADLWVNGESVARVSGVAEGHELPSDGFILLGQEISRSGIYRDLVSTVVFTGKMTGVNMWDHVLEAERIKEYANQDGSCDSRGNVIGWGISEIVPNGGAQYIN

Target ORF information:

RefSeq Version	XM_689266.5
Organism	Danio rerio(Zebrafish)
Definition	Danio rerio pentraxin 3, long b (ptx3b), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_689266.5

ORF Insert Sequence:

ATGCAGAGAG AGACTAACGT ACACAGAATG TATGCGCCCG GGGCCGTGCT GGCCCTCTGC 
CTGCCCTGCT TTTTAACTGG GATCGTGTTC AGTTATGAGT ATGGAGAGGA TTACTCTGAT 
TCCTACTATA ACGAGATCTC CAATGGTGAC CGCGTGCAAT CAGAAGGCAC TCAAATCCCC 
TGTCCACCCC AGGACCTCTC CCGCTGGGAC AAACTCTTCA TTATGCTGGA AGACTCTCAG 
ATGAAGCAAA ACATGCTCCA TTGGCAGACT GAAGACATGG TCAAGAAAGA GATGGACTCT 
ATACGGAAGG ATCTCCATAA GCTTAACAAT AACAAAGCAT GTGTCCAGGC TTCAGAAAAC 
ACTTGCAAGT GCATAAGCGA ACAGATGAAC CGCAATATAA AGCAAGTTAT GGAGCAGCTC 
AGAGAGGCTG CAGATTCTCA TCAAGCCCAA AACAATGAGA CGCTGCAGCA GCTCATTCAG 
CTGAGCCGAC ATCAGGCTTC CCGTCTCGCC AAACTGGAGT TAGGAGCAGG ACTAGGGCAG 
GTGGCCGTGA AGTCTTTTTC TGTTTATCCA AAAGAACAAG AAGCAAGCAG TGCAGATGGT 
GGGAAGTTGG AGAGAGCACT AATGGCCGCC ACTGCTGATC TCCAAAGGGT GCATGCCCAA 
CTGGCCCTTT TCCAGAGAGC AACCGTAAAC CGCTATCTGC CCTCAGGGTG TGAGATGGCT 
TTGTTATTTC CAATGCGCTC CAAGCACATC TTCGCAGAAG TAACACCCTC CATGTCCATG 
TCTCTACAAA CATTCACTCT CTGTCTGTGG GCCAAAGTGA CTCAGGCTCT TAATAAAACA 
GTTCTTTTCT CATACGGAAG CAAGATAAAC CCTCAAGAGC TCCAGCTTCT TCTGTCAGGT 
CGCTCACTAC TCCTCAAGGT GGGCGGTGAC ACTGGTCTAG TGGAAGCTCT TGGTGTAGTA 
ACAGATGGGC AGTGGGGACA CTTTTGCGCC ACTTGGAGCT CAAAGCAGGG TTTGGCTGAT 
TTGTGGGTGA ATGGAGAAAG TGTTGCCAGA GTGTCTGGAG TAGCAGAAGG CCACGAACTG 
CCCAGTGATG GGTTCATTTT GCTTGGACAG GAGATCAGCC GGTCGGGAAT TTACAGAGAT 
CTGGTCTCAA CTGTAGTCTT CACCGGGAAG ATGACAGGGG TGAACATGTG GGACCACGTG 
CTGGAGGCGG AGAGGATTAA AGAGTACGCC AATCAGGACG GGTCATGTGA TAGCAGAGGG 
AATGTGATTG GATGGGGCAT TTCAGAGATC GTTCCAAATG GTGGAGCTCA ATATATCAAC 
TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

ptx3b ( XM_689266.6 ) cDNA ORF clone, Danio rerio(zebrafish) -> XP_694358.3 Danio rerio pentraxin 3, long b (ptx3b), mRNA.

Price & Availability↑

CloneID	ODa07243
Clone ID Related Accession (Same CDS sequence)	XM_689266.5 , XM_689266.6
Accession Version	XM_689266.6 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1323bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-06-14
Organism	Danio rerio(zebrafish)
Product	pentraxin-related protein PTX3
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007113.7) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_689266.5. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGCAGAGAG AGACTAACGT ACACAGAATG TATGCGCCCG GGGCCGTGCT GGCCCTCTGC 
CTGCCCTGCT TTTTAACTGG GATCGTGTTC AGTTATGAGT ATGGAGAGGA TTACTCTGAT 
TCCTACTATA ACGAGATCTC CAATGGTGAC CGCGTGCAAT CAGAAGGCAC TCAAATCCCC 
TGTCCACCCC AGGACCTCTC CCGCTGGGAC AAACTCTTCA TTATGCTGGA AGACTCTCAG 
ATGAAGCAAA ACATGCTCCA TTGGCAGACT GAAGACATGG TCAAGAAAGA GATGGACTCT 
ATACGGAAGG ATCTCCATAA GCTTAACAAT AACAAAGCAT GTGTCCAGGC TTCAGAAAAC 
ACTTGCAAGT GCATAAGCGA ACAGATGAAC CGCAATATAA AGCAAGTTAT GGAGCAGCTC 
AGAGAGGCTG CAGATTCTCA TCAAGCCCAA AACAATGAGA CGCTGCAGCA GCTCATTCAG 
CTGAGCCGAC ATCAGGCTTC CCGTCTCGCC AAACTGGAGT TAGGAGCAGG ACTAGGGCAG 
GTGGCCGTGA AGTCTTTTTC TGTTTATCCA AAAGAACAAG AAGCAAGCAG TGCAGATGGT 
GGGAAGTTGG AGAGAGCACT AATGGCCGCC ACTGCTGATC TCCAAAGGGT GCATGCCCAA 
CTGGCCCTTT TCCAGAGAGC AACCGTAAAC CGCTATCTGC CCTCAGGGTG TGAGATGGCT 
TTGTTATTTC CAATGCGCTC CAAGCACATC TTCGCAGAAG TAACACCCTC CATGTCCATG 
TCTCTACAAA CATTCACTCT CTGTCTGTGG GCCAAAGTGA CTCAGGCTCT TAATAAAACA 
GTTCTTTTCT CATACGGAAG CAAGATAAAC CCTCAAGAGC TCCAGCTTCT TCTGTCAGGT 
CGCTCACTAC TCCTCAAGGT GGGCGGTGAC ACTGGTCTAG TGGAAGCTCT TGGTGTAGTA 
ACAGATGGGC AGTGGGGACA CTTTTGCGCC ACTTGGAGCT CAAAGCAGGG TTTGGCTGAT 
TTGTGGGTGA ATGGAGAAAG TGTTGCCAGA GTGTCTGGAG TAGCAGAAGG CCACGAACTG 
CCCAGTGATG GGTTCATTTT GCTTGGACAG GAGATCAGCC GGTCGGGAAT TTACAGAGAT 
CTGGTCTCAA CTGTAGTCTT CACCGGGAAG ATGACAGGGG TGAACATGTG GGACCACGTG 
CTGGAGGCGG AGAGGATTAA AGAGTACGCC AATCAGGACG GGTCATGTGA TAGCAGAGGG 
AATGTGATTG GATGGGGCAT TTCAGAGATC GTTCCAAATG GTGGAGCTCA ATATATCAAC 
TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_694358.3
CDS	433..1755
Translation	MQRETNVHRMYAPGAVLALCLPCFLTGIVFSYEYGEDYSDSYYNEISNGDRVQSEGTQIPCPPQDLSRWDKLFIMLEDSQMKQNMLHWQTEDMVKKEMDSIRKDLHKLNNNKACVQASENTCKCISEQMNRNIKQVMEQLREAADSHQAQNNETLQQLIQLSRHQASRLAKLELGAGLGQVAVKSFSVYPKEQEASSADGGKLERALMAATADLQRVHAQLALFQRATVNRYLPSGCEMALLFPMRSKHIFAEVTPSMSMSLQTFTLCLWAKVTQALNKTVLFSYGSKINPQELQLLLSGRSLLLKVGGDTGLVEALGVVTDGQWGHFCATWSSKQGLADLWVNGESVARVSGVAEGHELPSDGFILLGQEISRSGIYRDLVSTVVFTGKMTGVNMWDHVLEAERIKEYANQDGSCDSRGNVIGWGISEIVPNGGAQYIN

Target ORF information:

RefSeq Version	XM_689266.6
Organism	Danio rerio(zebrafish)
Definition	Danio rerio pentraxin 3, long b (ptx3b), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_689266.6

ORF Insert Sequence:

ATGCAGAGAG AGACTAACGT ACACAGAATG TATGCGCCCG GGGCCGTGCT GGCCCTCTGC 
CTGCCCTGCT TTTTAACTGG GATCGTGTTC AGTTATGAGT ATGGAGAGGA TTACTCTGAT 
TCCTACTATA ACGAGATCTC CAATGGTGAC CGCGTGCAAT CAGAAGGCAC TCAAATCCCC 
TGTCCACCCC AGGACCTCTC CCGCTGGGAC AAACTCTTCA TTATGCTGGA AGACTCTCAG 
ATGAAGCAAA ACATGCTCCA TTGGCAGACT GAAGACATGG TCAAGAAAGA GATGGACTCT 
ATACGGAAGG ATCTCCATAA GCTTAACAAT AACAAAGCAT GTGTCCAGGC TTCAGAAAAC 
ACTTGCAAGT GCATAAGCGA ACAGATGAAC CGCAATATAA AGCAAGTTAT GGAGCAGCTC 
AGAGAGGCTG CAGATTCTCA TCAAGCCCAA AACAATGAGA CGCTGCAGCA GCTCATTCAG 
CTGAGCCGAC ATCAGGCTTC CCGTCTCGCC AAACTGGAGT TAGGAGCAGG ACTAGGGCAG 
GTGGCCGTGA AGTCTTTTTC TGTTTATCCA AAAGAACAAG AAGCAAGCAG TGCAGATGGT 
GGGAAGTTGG AGAGAGCACT AATGGCCGCC ACTGCTGATC TCCAAAGGGT GCATGCCCAA 
CTGGCCCTTT TCCAGAGAGC AACCGTAAAC CGCTATCTGC CCTCAGGGTG TGAGATGGCT 
TTGTTATTTC CAATGCGCTC CAAGCACATC TTCGCAGAAG TAACACCCTC CATGTCCATG 
TCTCTACAAA CATTCACTCT CTGTCTGTGG GCCAAAGTGA CTCAGGCTCT TAATAAAACA 
GTTCTTTTCT CATACGGAAG CAAGATAAAC CCTCAAGAGC TCCAGCTTCT TCTGTCAGGT 
CGCTCACTAC TCCTCAAGGT GGGCGGTGAC ACTGGTCTAG TGGAAGCTCT TGGTGTAGTA 
ACAGATGGGC AGTGGGGACA CTTTTGCGCC ACTTGGAGCT CAAAGCAGGG TTTGGCTGAT 
TTGTGGGTGA ATGGAGAAAG TGTTGCCAGA GTGTCTGGAG TAGCAGAAGG CCACGAACTG 
CCCAGTGATG GGTTCATTTT GCTTGGACAG GAGATCAGCC GGTCGGGAAT TTACAGAGAT 
CTGGTCTCAA CTGTAGTCTT CACCGGGAAG ATGACAGGGG TGAACATGTG GGACCACGTG 
CTGGAGGCGG AGAGGATTAA AGAGTACGCC AATCAGGACG GGTCATGTGA TAGCAGAGGG 
AATGTGATTG GATGGGGCAT TTCAGAGATC GTTCCAAATG GTGGAGCTCA ATATATCAAC 
TGA