si:ch211-51h9.6 cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	si:ch211-51h9.6
Entrez Gene ID	563100
Full Name	si:ch211-51h9.6
General protein information	Preferred Names si:ch211-51h9.6 Names UPF0545 protein C22orf39 homolog
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001123264.1	NP_001116736.1	UPF0545 protein C22orf39 homolog

Pathways from BioSystems

Homologies

Mus musculus (house mouse)	2510002D24Rik	NP_001028336.1
Rattus norvegicus (Norway rat)	LOC498122	NP_001102528.1
Danio rerio (zebrafish)	si:ch211-51h9.6	NP_001116736.1
Xenopus tropicalis (tropical clawed frog)	LOC100485616	XP_004910632.1
Canis lupus familiaris (dog)	C26H22orf39	XP_543549.2

Gene Ontology
Bibliography

Related articles in PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

Comparative mapping of the 22q11.2 deletion region and the potential of simple model organisms.
Guna A, Butcher NJ, Bassett AS
Journal of neurodevelopmental disorders7(1)18(2015)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following si:ch211-51h9.6 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the si:ch211-51h9.6 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa00086	NM_001123264.1 Latest version!	Danio rerio si:ch211-51h9.6 (si:ch211-51h9.6), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$104.30 $149.00

ORF Online Only Promotion

Next-day Shipping ORF Clones ( in default vector with tag)
1 Clone	30% OFF
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5 or more Clone	50% OFF
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30% OFF

*Business Day

** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

si:ch211-51h9.6 ( NM_001123264.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001116736.1 Danio rerio si:ch211-51h9.6 (si:ch211-51h9.6), mRNA.

Price & Availability↑

CloneID	ODa00086
Clone ID Related Accession (Same CDS sequence)	NM_001123264.1
Accession Version	NM_001123264.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 327bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2018-11-23
Organism	Danio rerio(zebrafish)
Product	UPF0545 protein C22orf39 homolog
Comment	Comment: PREDICTED REFSEQ: This record has not been reviewed and the function is unknown. The reference sequence was derived from BX088526.6. On Apr 11, 2008 this sequence version replaced XM_686467.2. ##Evidence-Data-START## Transcript exon combination :: GFIL01036362.1, EH553720.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA4476728, SAMEA4476764 [ECO:0000348] ##Evidence-Data-END##

ATGGCAGGGT CACAGGCACA GTGGAGGCCA CCACGCTCGT GTGACATCTA CTGTAGTGAA 
TTGAAGCACT GCAAGAGTTT AAGAAACAGG TTTCATGAGT ATTACACCTA CGGCAGAGCT 
CCAGACTGCC AGCAGTGGAA ACAAGACTAT CAGAACTGTA AAGACTGGGA GAAAAACCAC 
AGCACGCAAG CCAAGGAATC TCTGCAGGAG AGCGAGAGGA AGCGGCTGGC GGATCAGAGG 
AAGTTCACTC CGGTCTGGGA GCTTCGGCAA AAACCTCCAT CTGACTGGCA TCTGCCGCTT 
AACCAGGGCA AACCACAGGA CCCTTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001116736.1
CDS	63..389
Translation	MAGSQAQWRPPRSCDIYCSELKHCKSLRNRFHEYYTYGRAPDCQQWKQDYQNCKDWEKNHSTQAKESLQESERKRLADQRKFTPVWELRQKPPSDWHLPLNQGKPQDP

Target ORF information:

RefSeq Version	NM_001123264.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio si:ch211-51h9.6 (si:ch211-51h9.6), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001123264.1

ORF Insert Sequence:

ATGGCAGGGT CACAGGCACA GTGGAGGCCA CCACGCTCGT GTGACATCTA CTGTAGTGAA 
TTGAAGCACT GCAAGAGTTT AAGAAACAGG TTTCATGAGT ATTACACCTA CGGCAGAGCT 
CCAGACTGCC AGCAGTGGAA ACAAGACTAT CAGAACTGTA AAGACTGGGA GAAAAACCAC 
AGCACGCAAG CCAAGGAATC TCTGCAGGAG AGCGAGAGGA AGCGGCTGGC GGATCAGAGG 
AAGTTCACTC CGGTCTGGGA GCTTCGGCAA AAACCTCCAT CTGACTGGCA TCTGCCGCTT 
AACCAGGGCA AACCACAGGA CCCTTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

Comparative mapping of the 22q11.2 deletion region and the potential of simple model organisms.
Journal of neurodevelopmental disorders7(1)18(2015)
Guna A,Butcher NJ,Bassett AS