Capn6 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene
Clones
gRNAs

Summary

Gene Symbol	Capn6
Entrez Gene ID	83685
Full Name	calpain 6
General protein information	Preferred Names calpain 6 Names calpain-6
Gene Type	protein-coding
Organism	Rattus norvegicus(Norway rat)
Genome	Chromosome: X Map Location: Xq33
Summary	human and mouse homologs lack the calmodulin-like domain present in other members of the calpain family of calcium-dependent, cysteine proteases and may be proteolytically inactive [RGD, Feb 2006].

mRNA and Protein(s)

mRNA	Protein	Name
NM_031808.1	NP_113996.1	calpain-6

Pathways from BioSystems

Homologies

Homo sapiens (human)	CAPN6	NP_055104.2
	LOC706434	XP_002808592.1
Canis lupus familiaris (dog)	CAPN6	XP_549188.2
Bos taurus (cattle)	CAPN6	NP_001179160.1
Rattus norvegicus (Norway rat)	Capn6	NP_113996.1
Gallus gallus (chicken)	CAPN6	XP_420313.2
Pan troglodytes (chimpanzee)	CAPN6	XP_001146965.1
Mus musculus (house mouse)	Capn6	NP_031629.3

Gene Ontology
Bibliography

Related articles in PubMed

Calpain 6 is involved in microtubule stabilization and cytoskeletal organization.
Tonami K, Kurihara Y, Aburatani H, Uchijima Y, Asano T, Kurihara H
Molecular and cellular biology27(7)2548-61(2007 Apr)

Human T-cell leukemia virus type 1 Tax protein stimulates the interferon-responsive enhancer element via NF-kappaB activity.
Shimizu T, Kawakita S, Li QH, Fukuhara S, Fujisawa J
FEBS letters539(1-3)73-7(2003 Mar)

Genomic organization of mouse Capn5 and Capn6 genes confirms that they are a distinct calpain subfamily.
Matena K, Boehm T, Dear N
Genomics48(1)117-20(1998 Feb)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following Capn6 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Capn6 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ORa08782	NM_031808.1 Latest version!	Rattus norvegicus calpain 6 (Capn6), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	14-16	$307.30 $439.00

ORF Online Only Promotion

Next-day Shipping ORF Clones ( in default vector with tag)
1 Clone	30% OFF
2-4 Clone	40% OFF
5 or more Clone	50% OFF
All Other ORF Clones
30% OFF

*Business Day

** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Capn6 ( NM_031808.1 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> NP_113996.1 Rattus norvegicus calpain 6 (Capn6), mRNA.

Price & Availability↑

CloneID	ORa08782
Clone ID Related Accession (Same CDS sequence)	NM_031808.1
Accession Version	NM_031808.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1926bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-12-26
Organism	Rattus norvegicus(Norway rat)
Product	calpain-6
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AF067793.1. On Dec 17, 2003 this sequence version replaced XM_346869.1. ##Evidence-Data-START## Transcript exon combination :: AF067793.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMD00052296, SAMD00052297 [ECO:0000350] ##Evidence-Data-END##

ATGGGTCCTC CTCTGAAGCT CTTCAAAAAC CAGAAGTACC AAGAACTGAA GCAAGACTGC 
ATGAAGGATG GCCGACTTTT CTGTGACCCT ACCTTCCTAC CGGAGAATGA TTCTCTGTTT 
TTCAACCGGC TGCTTCCAGG AAAGGTTGTG TGGAAACGTC CTCAGGACAT TTCTGATGAC 
CCCCATCTGA TTGTGGGCAA CATTAGCAAC CACCAGCTGA TCCAGGGAAG ACTGGGGAAC 
AAGGCAATGA TTTCTGCATT TTCCTGTTTG GCTGTTCAGG AGTCACACTG GACAAAGGCG 
ATTCCCAACC ATAAGGAACA GGAATGGGAT CCTCGAAAGC CAGAAAAATA TGCTGGAATC 
TTTCGCTTCC GTTTCTGGCA TTTTGGAGAA TGGACTGAGG TGGTGATTGA CGACTTGCTT 
CCCACCATCA ATGGAGATCT GGTCTTCTCA TTCTCCACCT CCATGAATGA GTTTTGGAAT 
GCTCTACTGG AAAAAGCATA TGCAAAGCTT CTGGGCTGTT ATGAGGCTTT GGATGGTCTG 
ACCATCACTG ATATCATCAT GGACTTCACG GGCACATTGG CTGAAATCAT TGACATGCAG 
AAAGGACGCT ACACCGATCT TGTTGAGGAG AAGTACAAGC TGTTTGGAGA ACTGTACAAA 
ACGTTCACCA AAGGAGGTCT AATTTCCTGC TCCATTGAGT CTCCCAGCCA GGAGGAACAA 
GAAGTTGAAA CAGATTGGGG TCTACTGAAG GGTTATACCT ACACCATGAC TGATATTCGC 
AAGCTCCGTC TTGGAGAAAG ACTTGTGGAA GTCTTCAGTA CGGAGAAGCT GTATATGGTT 
CGCCTAAGGA ATCCATTGGG AAGACAAGAA TGGAGCGGCC CCTGGAGTGA AATTTCGGAA 
GAGTGGCAGC AACTGACTGT AACCGATCGC AAGAACCTGG GGCTTGTTAT GTCTGATGAT 
GGAGAATTTT GGATGAGTCT GGAAGATTTT TGCCACAACT TTCACAAACT GAATGTCTGC 
CGCAATGTGA ATAACCCTGT TTTCGGTCGC AAGGAGCTGG AATCAGTGGT GGGATGTTGG 
ACTGTGGATG ATGACCCTCT GATGAACCGA TCGGGAGGTT GCTATAACAA CCGCGATACC 
TTCCTGCAGA ATCCTCAGTA CATCTTCACT GTGCCTGAGG ATGGCCATAA GGTCATCATG 
TCACTGCAGC AGAAGGATCT ACGCACTTAC CGCCGAATGG GAAGACCTGA CAATTACATC 
ATTGGTTTTG AGCTCTTCAA GGTGGAGATG AACCGAAGAT TCCGCCTTCA TCACCTGTAT 
ATTCAGGAGC GAGCTGGAAC TTCCACCTAT ATCGACACCC GTACCGTGTT TCTGAGCAAG 
TATCTGAAGA AGGGCAACTA TGTTCTTGTT CCAACTATGT TCCAGCATGG CCGTACCAGC 
GAATTTCTAC TGAGGATCTT CTCGGAAGTG CCTGTCCAGC TCAGGGAACT GACATTGGAC 
ATGCCCAAGA TGTCTTGCTG GAACCTGGCA CGTGGCTACC CAAAGGTGGT TACCCAGATC 
ACTGTCCACA GTGCCGAGGG CCTGGAGAAG AAGTATGCCA ATGAAACTGT AAATCCATAT 
CTGACCATCA AATGTGGAAA GGAAGAAGTC CGTTCTCCTG TCCAGAAGAA CACCGTGCAT 
GCCATTTTTG ACACCCAGGC CATTTTCTAC CGAAGGACCA CTGACATTCC TATTATCATC 
CAGGTCTGGA ATAGCAGAAA ATTCTGTGAT CAGTTCCTGG GGCAGGTTAC TCTGGATGCT 
GACCCCAGTG ACTGCCGTGA TCTGAAATCT CTGTATCTGC GTAAGAAGGG TGGTCCCACG 
GCCAAAGTCA AGCAAGGCCA CATCAGTTTC AAAGTTATCT CTAGCGATGA TCTCACTGAG 
CTCTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_113996.1
CDS	160..2085
Translation	MGPPLKLFKNQKYQELKQDCMKDGRLFCDPTFLPENDSLFFNRLLPGKVVWKRPQDISDDPHLIVGNISNHQLIQGRLGNKAMISAFSCLAVQESHWTKAIPNHKEQEWDPRKPEKYAGIFRFRFWHFGEWTEVVIDDLLPTINGDLVFSFSTSMNEFWNALLEKAYAKLLGCYEALDGLTITDIIMDFTGTLAEIIDMQKGRYTDLVEEKYKLFGELYKTFTKGGLISCSIESPSQEEQEVETDWGLLKGYTYTMTDIRKLRLGERLVEVFSTEKLYMVRLRNPLGRQEWSGPWSEISEEWQQLTVTDRKNLGLVMSDDGEFWMSLEDFCHNFHKLNVCRNVNNPVFGRKELESVVGCWTVDDDPLMNRSGGCYNNRDTFLQNPQYIFTVPEDGHKVIMSLQQKDLRTYRRMGRPDNYIIGFELFKVEMNRRFRLHHLYIQERAGTSTYIDTRTVFLSKYLKKGNYVLVPTMFQHGRTSEFLLRIFSEVPVQLRELTLDMPKMSCWNLARGYPKVVTQITVHSAEGLEKKYANETVNPYLTIKCGKEEVRSPVQKNTVHAIFDTQAIFYRRTTDIPIIIQVWNSRKFCDQFLGQVTLDADPSDCRDLKSLYLRKKGGPTAKVKQGHISFKVISSDDLTEL

Target ORF information:

RefSeq Version	NM_031808.1
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus calpain 6 (Capn6), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_031808.1

ORF Insert Sequence:

ATGGGTCCTC CTCTGAAGCT CTTCAAAAAC CAGAAGTACC AAGAACTGAA GCAAGACTGC 
ATGAAGGATG GCCGACTTTT CTGTGACCCT ACCTTCCTAC CGGAGAATGA TTCTCTGTTT 
TTCAACCGGC TGCTTCCAGG AAAGGTTGTG TGGAAACGTC CTCAGGACAT TTCTGATGAC 
CCCCATCTGA TTGTGGGCAA CATTAGCAAC CACCAGCTGA TCCAGGGAAG ACTGGGGAAC 
AAGGCAATGA TTTCTGCATT TTCCTGTTTG GCTGTTCAGG AGTCACACTG GACAAAGGCG 
ATTCCCAACC ATAAGGAACA GGAATGGGAT CCTCGAAAGC CAGAAAAATA TGCTGGAATC 
TTTCGCTTCC GTTTCTGGCA TTTTGGAGAA TGGACTGAGG TGGTGATTGA CGACTTGCTT 
CCCACCATCA ATGGAGATCT GGTCTTCTCA TTCTCCACCT CCATGAATGA GTTTTGGAAT 
GCTCTACTGG AAAAAGCATA TGCAAAGCTT CTGGGCTGTT ATGAGGCTTT GGATGGTCTG 
ACCATCACTG ATATCATCAT GGACTTCACG GGCACATTGG CTGAAATCAT TGACATGCAG 
AAAGGACGCT ACACCGATCT TGTTGAGGAG AAGTACAAGC TGTTTGGAGA ACTGTACAAA 
ACGTTCACCA AAGGAGGTCT AATTTCCTGC TCCATTGAGT CTCCCAGCCA GGAGGAACAA 
GAAGTTGAAA CAGATTGGGG TCTACTGAAG GGTTATACCT ACACCATGAC TGATATTCGC 
AAGCTCCGTC TTGGAGAAAG ACTTGTGGAA GTCTTCAGTA CGGAGAAGCT GTATATGGTT 
CGCCTAAGGA ATCCATTGGG AAGACAAGAA TGGAGCGGCC CCTGGAGTGA AATTTCGGAA 
GAGTGGCAGC AACTGACTGT AACCGATCGC AAGAACCTGG GGCTTGTTAT GTCTGATGAT 
GGAGAATTTT GGATGAGTCT GGAAGATTTT TGCCACAACT TTCACAAACT GAATGTCTGC 
CGCAATGTGA ATAACCCTGT TTTCGGTCGC AAGGAGCTGG AATCAGTGGT GGGATGTTGG 
ACTGTGGATG ATGACCCTCT GATGAACCGA TCGGGAGGTT GCTATAACAA CCGCGATACC 
TTCCTGCAGA ATCCTCAGTA CATCTTCACT GTGCCTGAGG ATGGCCATAA GGTCATCATG 
TCACTGCAGC AGAAGGATCT ACGCACTTAC CGCCGAATGG GAAGACCTGA CAATTACATC 
ATTGGTTTTG AGCTCTTCAA GGTGGAGATG AACCGAAGAT TCCGCCTTCA TCACCTGTAT 
ATTCAGGAGC GAGCTGGAAC TTCCACCTAT ATCGACACCC GTACCGTGTT TCTGAGCAAG 
TATCTGAAGA AGGGCAACTA TGTTCTTGTT CCAACTATGT TCCAGCATGG CCGTACCAGC 
GAATTTCTAC TGAGGATCTT CTCGGAAGTG CCTGTCCAGC TCAGGGAACT GACATTGGAC 
ATGCCCAAGA TGTCTTGCTG GAACCTGGCA CGTGGCTACC CAAAGGTGGT TACCCAGATC 
ACTGTCCACA GTGCCGAGGG CCTGGAGAAG AAGTATGCCA ATGAAACTGT AAATCCATAT 
CTGACCATCA AATGTGGAAA GGAAGAAGTC CGTTCTCCTG TCCAGAAGAA CACCGTGCAT 
GCCATTTTTG ACACCCAGGC CATTTTCTAC CGAAGGACCA CTGACATTCC TATTATCATC 
CAGGTCTGGA ATAGCAGAAA ATTCTGTGAT CAGTTCCTGG GGCAGGTTAC TCTGGATGCT 
GACCCCAGTG ACTGCCGTGA TCTGAAATCT CTGTATCTGC GTAAGAAGGG TGGTCCCACG 
GCCAAAGTCA AGCAAGGCCA CATCAGTTTC AAAGTTATCT CTAGCGATGA TCTCACTGAG 
CTCTAA