LOC105643422 cDNA ORF clone, Jatropha curcas

Gene
Clones
gRNAs

Summary

Gene Symbol	LOC105643422
Entrez Gene ID	105643422
Full Name	protein ROOT PRIMORDIUM DEFECTIVE 1
Gene Type	protein-coding
Organism	Jatropha curcas

mRNA and Protein(s)

mRNA	Protein	Name
XM_012228540.2	XP_012083930.1	protein ROOT PRIMORDIUM DEFECTIVE 1
XM_012228539.2	XP_012083929.1	protein ROOT PRIMORDIUM DEFECTIVE 1

Pathways from BioSystems
Gene Ontology

The following LOC105643422 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC105643422 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OJa59279	XM_012228539.2 Latest version!	Jatropha curcas protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC105643422), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$258.30 $369.00
OJa59279	XM_012228540.2 Latest version!	Jatropha curcas protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC105643422), transcript variant X2, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$258.30 $369.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

LOC105643422 ( XM_012228540.2 ) cDNA ORF clone, Jatropha curcas -> XP_012083930.1 Jatropha curcas protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC105643422), transcript variant X2, mRNA.

Price & Availability↑

CloneID	OJa59279
Clone ID Related Accession (Same CDS sequence)	XM_012228540.2 , XM_012228539.2
Accession Version	XM_012228540.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1374bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-04-05
Organism	Jatropha curcas
Product	protein ROOT PRIMORDIUM DEFECTIVE 1
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_012124649.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Apr 6, 2017 this sequence version replaced XM_012228540.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Jatropha curcas Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGCCCTTTT GGTTAAGAAT CAAATCAAAG AATATGGTGC TGTTTGAAAA TGTTCACCCT 
AGAATCATAA TTCAAACTAG GTTCTATTGT AACACACTGA CAACAAGCTT ACCCAGAATA 
CCATTTGGTC CATTCAACTC ATTTGTCCAA AAAAGATGGA GAAAACCAGC AGATACTGCC 
CAAACTCGGT TGGAGAACCG CACTAGAGAT TCTAAACTCG ATGGACTGAC ATCTAACCTC 
CAGAAACTCA AAACCATCCT CAAAATCCAT CAACTCATGT CCAGTAGAAA GCGTGGCCTT 
TTTGTGTCTG TACAACTGAT GTCTCGATGG AAAAACATTG TCGGATTGAA TGTGAGTATG 
GGTGCATTTG TTCAAAAGTA CCCACATGTG TTTGAGGTAT TCATGCACCC TGTCAGGAGG 
AATTTGTGTT GTAGAATCAC ACAGAAGATG AGGAATTTGA TTGTTGAAGA AGAGAATGTT 
ACTAAGGAAT GTGAAAATGA ATCCATTAGG AGAATAAAGA AGTTATTGAT GATGTCTAGA 
AGGGGGATTC TTCACGTTCA TGCTTTAAGG TTGATCAGGA GAGAATTAGG TTTGCCAAAG 
GATTTTAGGG ACTCAATTTT AGGCAAGTAT AAAGATCATT TTAGGTTAGC TGATTTGGAA 
ATAGTAGAAT TAGTTGATCA GGACGAGGAT TTGGGACCAG CTGAAATTGA GAATTGGAGA 
GAGAAGGAGT ACAGAGAAAA GTGGTTGAGT GAGTTTGAGG TGAAGTTTGC CTTTCCCATT 
AATTTTCCCA CTGGATTTAA GATTGAGAGA GGACAGAGAG AGAAAATGAA AAATTGGCAA 
AGGCTCCCTT TTTTGAAACC CTATGAGAAA ATGGATGTTG TTAAGGTGCG TACTTGTGGA 
GGGGTAGAGC GATATGAGAA GCGGGTGGTT GGGATAATTC ATGAACTGTT GAGCTTGACA 
GTGGAGAAGA TGGTTGAGGT CGAAAGGTTG GCACATTTTA GAAAGGATTT TTGTATGGAA 
GTAAATGTGC GTGAATTGCT TTTGAAACAT CCTGGGATTT TTTATATATC AACAAGGGGT 
AGTACACATA CTGTTTTTCT TAGGGAAGCA TATTGCAAAG GATGTTTGGT TGTACCGAAC 
CCCATTTCTG TTGTTCGGAG GAAGATGCTG GACCTTGTTT TACTGGGTTG TCGAAATACA 
AGAGAGTTGC TACCTCAAAG GGAAGTTAAG AAGGAAAATA ACAGTTTGGT TCCCGGAGGT 
ACAACAGTAG GAGATTGGGT TATCCCATAT TTTAGATGTT TTGACACTGA CAGTAACCAT 
GTTGGATGCC ATGATAATGG AAGTATTGAA AGTGACAGAT GCATTGATGG ATGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_012083930.1
CDS	298..1671
Translation	MPFWLRIKSKNMVLFENVHPRIIIQTRFYCNTLTTSLPRIPFGPFNSFVQKRWRKPADTAQTRLENRTRDSKLDGLTSNLQKLKTILKIHQLMSSRKRGLFVSVQLMSRWKNIVGLNVSMGAFVQKYPHVFEVFMHPVRRNLCCRITQKMRNLIVEEENVTKECENESIRRIKKLLMMSRRGILHVHALRLIRRELGLPKDFRDSILGKYKDHFRLADLEIVELVDQDEDLGPAEIENWREKEYREKWLSEFEVKFAFPINFPTGFKIERGQREKMKNWQRLPFLKPYEKMDVVKVRTCGGVERYEKRVVGIIHELLSLTVEKMVEVERLAHFRKDFCMEVNVRELLLKHPGIFYISTRGSTHTVFLREAYCKGCLVVPNPISVVRRKMLDLVLLGCRNTRELLPQREVKKENNSLVPGGTTVGDWVIPYFRCFDTDSNHVGCHDNGSIESDRCIDG

Target ORF information:

RefSeq Version	XM_012228540.2
Organism	Jatropha curcas
Definition	Jatropha curcas protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC105643422), transcript variant X2, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_012228540.2

ORF Insert Sequence:

ATGCCCTTTT GGTTAAGAAT CAAATCAAAG AATATGGTGC TGTTTGAAAA TGTTCACCCT 
AGAATCATAA TTCAAACTAG GTTCTATTGT AACACACTGA CAACAAGCTT ACCCAGAATA 
CCATTTGGTC CATTCAACTC ATTTGTCCAA AAAAGATGGA GAAAACCAGC AGATACTGCC 
CAAACTCGGT TGGAGAACCG CACTAGAGAT TCTAAACTCG ATGGACTGAC ATCTAACCTC 
CAGAAACTCA AAACCATCCT CAAAATCCAT CAACTCATGT CCAGTAGAAA GCGTGGCCTT 
TTTGTGTCTG TACAACTGAT GTCTCGATGG AAAAACATTG TCGGATTGAA TGTGAGTATG 
GGTGCATTTG TTCAAAAGTA CCCACATGTG TTTGAGGTAT TCATGCACCC TGTCAGGAGG 
AATTTGTGTT GTAGAATCAC ACAGAAGATG AGGAATTTGA TTGTTGAAGA AGAGAATGTT 
ACTAAGGAAT GTGAAAATGA ATCCATTAGG AGAATAAAGA AGTTATTGAT GATGTCTAGA 
AGGGGGATTC TTCACGTTCA TGCTTTAAGG TTGATCAGGA GAGAATTAGG TTTGCCAAAG 
GATTTTAGGG ACTCAATTTT AGGCAAGTAT AAAGATCATT TTAGGTTAGC TGATTTGGAA 
ATAGTAGAAT TAGTTGATCA GGACGAGGAT TTGGGACCAG CTGAAATTGA GAATTGGAGA 
GAGAAGGAGT ACAGAGAAAA GTGGTTGAGT GAGTTTGAGG TGAAGTTTGC CTTTCCCATT 
AATTTTCCCA CTGGATTTAA GATTGAGAGA GGACAGAGAG AGAAAATGAA AAATTGGCAA 
AGGCTCCCTT TTTTGAAACC CTATGAGAAA ATGGATGTTG TTAAGGTGCG TACTTGTGGA 
GGGGTAGAGC GATATGAGAA GCGGGTGGTT GGGATAATTC ATGAACTGTT GAGCTTGACA 
GTGGAGAAGA TGGTTGAGGT CGAAAGGTTG GCACATTTTA GAAAGGATTT TTGTATGGAA 
GTAAATGTGC GTGAATTGCT TTTGAAACAT CCTGGGATTT TTTATATATC AACAAGGGGT 
AGTACACATA CTGTTTTTCT TAGGGAAGCA TATTGCAAAG GATGTTTGGT TGTACCGAAC 
CCCATTTCTG TTGTTCGGAG GAAGATGCTG GACCTTGTTT TACTGGGTTG TCGAAATACA 
AGAGAGTTGC TACCTCAAAG GGAAGTTAAG AAGGAAAATA ACAGTTTGGT TCCCGGAGGT 
ACAACAGTAG GAGATTGGGT TATCCCATAT TTTAGATGTT TTGACACTGA CAGTAACCAT 
GTTGGATGCC ATGATAATGG AAGTATTGAA AGTGACAGAT GCATTGATGG ATGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

LOC105643422 ( XM_012228539.2 ) cDNA ORF clone, Jatropha curcas -> XP_012083929.1 Jatropha curcas protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC105643422), transcript variant X1, mRNA.

Price & Availability↑

CloneID	OJa59279
Clone ID Related Accession (Same CDS sequence)	XM_012228540.2 , XM_012228539.2
Accession Version	XM_012228539.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1374bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-04-05
Organism	Jatropha curcas
Product	protein ROOT PRIMORDIUM DEFECTIVE 1
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_012124649.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Apr 6, 2017 this sequence version replaced XM_012228539.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Jatropha curcas Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGCCCTTTT GGTTAAGAAT CAAATCAAAG AATATGGTGC TGTTTGAAAA TGTTCACCCT 
AGAATCATAA TTCAAACTAG GTTCTATTGT AACACACTGA CAACAAGCTT ACCCAGAATA 
CCATTTGGTC CATTCAACTC ATTTGTCCAA AAAAGATGGA GAAAACCAGC AGATACTGCC 
CAAACTCGGT TGGAGAACCG CACTAGAGAT TCTAAACTCG ATGGACTGAC ATCTAACCTC 
CAGAAACTCA AAACCATCCT CAAAATCCAT CAACTCATGT CCAGTAGAAA GCGTGGCCTT 
TTTGTGTCTG TACAACTGAT GTCTCGATGG AAAAACATTG TCGGATTGAA TGTGAGTATG 
GGTGCATTTG TTCAAAAGTA CCCACATGTG TTTGAGGTAT TCATGCACCC TGTCAGGAGG 
AATTTGTGTT GTAGAATCAC ACAGAAGATG AGGAATTTGA TTGTTGAAGA AGAGAATGTT 
ACTAAGGAAT GTGAAAATGA ATCCATTAGG AGAATAAAGA AGTTATTGAT GATGTCTAGA 
AGGGGGATTC TTCACGTTCA TGCTTTAAGG TTGATCAGGA GAGAATTAGG TTTGCCAAAG 
GATTTTAGGG ACTCAATTTT AGGCAAGTAT AAAGATCATT TTAGGTTAGC TGATTTGGAA 
ATAGTAGAAT TAGTTGATCA GGACGAGGAT TTGGGACCAG CTGAAATTGA GAATTGGAGA 
GAGAAGGAGT ACAGAGAAAA GTGGTTGAGT GAGTTTGAGG TGAAGTTTGC CTTTCCCATT 
AATTTTCCCA CTGGATTTAA GATTGAGAGA GGACAGAGAG AGAAAATGAA AAATTGGCAA 
AGGCTCCCTT TTTTGAAACC CTATGAGAAA ATGGATGTTG TTAAGGTGCG TACTTGTGGA 
GGGGTAGAGC GATATGAGAA GCGGGTGGTT GGGATAATTC ATGAACTGTT GAGCTTGACA 
GTGGAGAAGA TGGTTGAGGT CGAAAGGTTG GCACATTTTA GAAAGGATTT TTGTATGGAA 
GTAAATGTGC GTGAATTGCT TTTGAAACAT CCTGGGATTT TTTATATATC AACAAGGGGT 
AGTACACATA CTGTTTTTCT TAGGGAAGCA TATTGCAAAG GATGTTTGGT TGTACCGAAC 
CCCATTTCTG TTGTTCGGAG GAAGATGCTG GACCTTGTTT TACTGGGTTG TCGAAATACA 
AGAGAGTTGC TACCTCAAAG GGAAGTTAAG AAGGAAAATA ACAGTTTGGT TCCCGGAGGT 
ACAACAGTAG GAGATTGGGT TATCCCATAT TTTAGATGTT TTGACACTGA CAGTAACCAT 
GTTGGATGCC ATGATAATGG AAGTATTGAA AGTGACAGAT GCATTGATGG ATGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_012083929.1
CDS	298..1671
Translation	MPFWLRIKSKNMVLFENVHPRIIIQTRFYCNTLTTSLPRIPFGPFNSFVQKRWRKPADTAQTRLENRTRDSKLDGLTSNLQKLKTILKIHQLMSSRKRGLFVSVQLMSRWKNIVGLNVSMGAFVQKYPHVFEVFMHPVRRNLCCRITQKMRNLIVEEENVTKECENESIRRIKKLLMMSRRGILHVHALRLIRRELGLPKDFRDSILGKYKDHFRLADLEIVELVDQDEDLGPAEIENWREKEYREKWLSEFEVKFAFPINFPTGFKIERGQREKMKNWQRLPFLKPYEKMDVVKVRTCGGVERYEKRVVGIIHELLSLTVEKMVEVERLAHFRKDFCMEVNVRELLLKHPGIFYISTRGSTHTVFLREAYCKGCLVVPNPISVVRRKMLDLVLLGCRNTRELLPQREVKKENNSLVPGGTTVGDWVIPYFRCFDTDSNHVGCHDNGSIESDRCIDG

Target ORF information:

RefSeq Version	XM_012228539.2
Organism	Jatropha curcas
Definition	Jatropha curcas protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC105643422), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_012228539.2

ORF Insert Sequence:

ATGCCCTTTT GGTTAAGAAT CAAATCAAAG AATATGGTGC TGTTTGAAAA TGTTCACCCT 
AGAATCATAA TTCAAACTAG GTTCTATTGT AACACACTGA CAACAAGCTT ACCCAGAATA 
CCATTTGGTC CATTCAACTC ATTTGTCCAA AAAAGATGGA GAAAACCAGC AGATACTGCC 
CAAACTCGGT TGGAGAACCG CACTAGAGAT TCTAAACTCG ATGGACTGAC ATCTAACCTC 
CAGAAACTCA AAACCATCCT CAAAATCCAT CAACTCATGT CCAGTAGAAA GCGTGGCCTT 
TTTGTGTCTG TACAACTGAT GTCTCGATGG AAAAACATTG TCGGATTGAA TGTGAGTATG 
GGTGCATTTG TTCAAAAGTA CCCACATGTG TTTGAGGTAT TCATGCACCC TGTCAGGAGG 
AATTTGTGTT GTAGAATCAC ACAGAAGATG AGGAATTTGA TTGTTGAAGA AGAGAATGTT 
ACTAAGGAAT GTGAAAATGA ATCCATTAGG AGAATAAAGA AGTTATTGAT GATGTCTAGA 
AGGGGGATTC TTCACGTTCA TGCTTTAAGG TTGATCAGGA GAGAATTAGG TTTGCCAAAG 
GATTTTAGGG ACTCAATTTT AGGCAAGTAT AAAGATCATT TTAGGTTAGC TGATTTGGAA 
ATAGTAGAAT TAGTTGATCA GGACGAGGAT TTGGGACCAG CTGAAATTGA GAATTGGAGA 
GAGAAGGAGT ACAGAGAAAA GTGGTTGAGT GAGTTTGAGG TGAAGTTTGC CTTTCCCATT 
AATTTTCCCA CTGGATTTAA GATTGAGAGA GGACAGAGAG AGAAAATGAA AAATTGGCAA 
AGGCTCCCTT TTTTGAAACC CTATGAGAAA ATGGATGTTG TTAAGGTGCG TACTTGTGGA 
GGGGTAGAGC GATATGAGAA GCGGGTGGTT GGGATAATTC ATGAACTGTT GAGCTTGACA 
GTGGAGAAGA TGGTTGAGGT CGAAAGGTTG GCACATTTTA GAAAGGATTT TTGTATGGAA 
GTAAATGTGC GTGAATTGCT TTTGAAACAT CCTGGGATTT TTTATATATC AACAAGGGGT 
AGTACACATA CTGTTTTTCT TAGGGAAGCA TATTGCAAAG GATGTTTGGT TGTACCGAAC 
CCCATTTCTG TTGTTCGGAG GAAGATGCTG GACCTTGTTT TACTGGGTTG TCGAAATACA 
AGAGAGTTGC TACCTCAAAG GGAAGTTAAG AAGGAAAATA ACAGTTTGGT TCCCGGAGGT 
ACAACAGTAG GAGATTGGGT TATCCCATAT TTTAGATGTT TTGACACTGA CAGTAACCAT 
GTTGGATGCC ATGATAATGG AAGTATTGAA AGTGACAGAT GCATTGATGG ATGA