OPN1SW cDNA ORF clone, Gallus gallus(chicken)

Gene
Clones
gRNAs

Summary

Gene Symbol	OPN1SW
Entrez Gene ID	396419
Full Name	opsin 1 (cone pigments), short-wave-sensitive (violet cone opsin)
Synonyms	SWS1,opsin
General protein information	Preferred Names opsin 1 (cone pigments), short-wave-sensitive (violet cone opsin) Names violet-sensitive opsin violet cone opsin violet cone photoreceptor pigment violet sensitive cone opsin
Gene Type	protein-coding
Organism	Gallus gallus(chicken)

mRNA and Protein(s)

mRNA	Protein	Name
NM_205438.1	NP_990769.1	violet-sensitive opsin

Pathways from BioSystems
Gene Ontology
Bibliography

Related articles in PubMed

Comparative studies on the late bleaching processes of four kinds of cone visual pigments and rod visual pigment.
Sato K, Yamashita T, Imamoto Y, Shichida Y
Biochemistry51(21)4300-8(2012 May)

Rhodopsin, violet and blue opsin expressions in the chick are highly dependent on tissue and serum conditions.
Jacob V, Rothermel A, Wolf P, Layer PG
Cells, tissues, organs180(3)159-68(2005)

Complex distribution of avian color vision systems revealed by sequencing the SWS1 opsin from total DNA.
Odeen A, Hastad O
Molecular biology and evolution20(6)855-61(2003 Jun)

Primary structures of chicken cone visual pigments: vertebrate rhodopsins have evolved out of cone visual pigments.
Okano T, Kojima D, Fukada Y, Shichida Y, Yoshizawa T
Proceedings of the National Academy of Sciences of the United States of America89(13)5932-6(1992 Jul)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

study shows that in embryonic retinal cell cultures, rhodopsin, followed by violet and blue opsin expressions is highly dependent on serum, cell density and tissue conditions, while red and green opsins are more autonomous
Title: Rhodopsin, violet and blue opsin expressions in the chick are highly dependent on tissue and serum conditions.

The following OPN1SW gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the OPN1SW cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OGa00441	NM_205438.1 Latest version!	Gallus gallus opsin 1 (cone pigments), short-wave-sensitive (violet cone opsin) (OPN1SW), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$258.30 $369.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

OPN1SW ( NM_205438.1 ) cDNA ORF clone, Gallus gallus(chicken) -> NP_990769.1 Gallus gallus opsin 1 (cone pigments), short-wave-sensitive (violet cone opsin) (OPN1SW), mRNA.

Price & Availability↑

CloneID	OGa00441
Clone ID Related Accession (Same CDS sequence)	NM_205438.1
Accession Version	NM_205438.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1044bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-12-25
Organism	Gallus gallus(chicken)
Product	violet-sensitive opsin
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from M92039.1. ##Evidence-Data-START## Transcript exon combination :: M92039.1 [ECO:0000332] ##Evidence-Data-END##

ATGTCATCGG ACGACGACTT CTACCTCTTC ACCAACGGCT CAGTGCCGGG CCCGTGGGAC 
GGCCCCCAAT ACCACATCGC CCCCCCGTGG GCCTTCTACC TACAGACGGC CTTCATGGGG 
ATCGTATTCG CCGTGGGGAC CCCACTGAAC GCCGTGGTGC TGTGGGTCAC CGTTCGTTAC 
AAACGACTCC GGCAGCCCCT TAATTACATC CTGGTCAACA TCTCGGCCAG CGGATTCGTC 
TCCTGCGTGC TCAGCGTCTT CGTCGTCTTC GTGGCCAGCG CCCGCGGATA CTTCGTCTTC 
GGGAAGAGGG TCTGCGAGTT GGAGGCCTTC GTGGGCACCC ACGGGGGGCT GGTGACGGGA 
TGGTCCCTGG CCTTTTTGGC CTTCGAGCGT TACATCGTTA TCTGCAAACC GTTCGGCAAC 
TTCCGGTTCA GCTCCCGGCA CGCCCTGCTG GTCGTCGTGG CCACGTGGCT CATCGGCGTC 
GGCGTCGGAC TGCCCCCCTT CTTCGGGTGG AGCCGGTACA TGCCTGAGGG TCTGCAGTGC 
TCGTGTGGCC CCGACTGGTA CACGGTGGGC ACGAAATACC GCAGCGAGTA CTACACGTGG 
TTCCTCTTCA TCTTCTGCTT CATCGTCCCC CTCTCCCTCA TCATCTTCTC CTACTCCCAA 
CTGCTGAGCG CCCTGCGAGC CGTGGCGGCG CAGCAGCAGG AGTCGGCCAC GACGCAGAAG 
GCGGAGCGGG AGGTGTCGCG GATGGTGGTG GTGATGGTGG GGTCGTTCTG CCTCTGCTAC 
GTCCCCTACG CCGCCCTCGC CATGTATATG GTCAACAACC GCGACCACGG CTTGGACCTC 
CGCCTCGTCA CCATCCCCGC CTTCTTCTCC AAGAGCGCCT GCGTCTACAA CCCCATCATC 
TACTGCTTCA TGAACAAGCA GTTCCGCGCC TGCATCATGG AGACGGTTTG CGGGAAGCCG 
CTGACGGACG ATTCGGACGC GTCGACTTCA GCGCAGAGGA CGGAGGTGTC CTCCGTGTCC 
TCCAGCCAAG TCGGCCCCAC TTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_990769.1
CDS	102..1145
Translation	MSSDDDFYLFTNGSVPGPWDGPQYHIAPPWAFYLQTAFMGIVFAVGTPLNAVVLWVTVRYKRLRQPLNYILVNISASGFVSCVLSVFVVFVASARGYFVFGKRVCELEAFVGTHGGLVTGWSLAFLAFERYIVICKPFGNFRFSSRHALLVVVATWLIGVGVGLPPFFGWSRYMPEGLQCSCGPDWYTVGTKYRSEYYTWFLFIFCFIVPLSLIIFSYSQLLSALRAVAAQQQESATTQKAEREVSRMVVVMVGSFCLCYVPYAALAMYMVNNRDHGLDLRLVTIPAFFSKSACVYNPIIYCFMNKQFRACIMETVCGKPLTDDSDASTSAQRTEVSSVSSSQVGPT

Target ORF information:

RefSeq Version	NM_205438.1
Organism	Gallus gallus(chicken)
Definition	Gallus gallus opsin 1 (cone pigments), short-wave-sensitive (violet cone opsin) (OPN1SW), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_205438.1

ORF Insert Sequence:

ATGTCATCGG ACGACGACTT CTACCTCTTC ACCAACGGCT CAGTGCCGGG CCCGTGGGAC 
GGCCCCCAAT ACCACATCGC CCCCCCGTGG GCCTTCTACC TACAGACGGC CTTCATGGGG 
ATCGTATTCG CCGTGGGGAC CCCACTGAAC GCCGTGGTGC TGTGGGTCAC CGTTCGTTAC 
AAACGACTCC GGCAGCCCCT TAATTACATC CTGGTCAACA TCTCGGCCAG CGGATTCGTC 
TCCTGCGTGC TCAGCGTCTT CGTCGTCTTC GTGGCCAGCG CCCGCGGATA CTTCGTCTTC 
GGGAAGAGGG TCTGCGAGTT GGAGGCCTTC GTGGGCACCC ACGGGGGGCT GGTGACGGGA 
TGGTCCCTGG CCTTTTTGGC CTTCGAGCGT TACATCGTTA TCTGCAAACC GTTCGGCAAC 
TTCCGGTTCA GCTCCCGGCA CGCCCTGCTG GTCGTCGTGG CCACGTGGCT CATCGGCGTC 
GGCGTCGGAC TGCCCCCCTT CTTCGGGTGG AGCCGGTACA TGCCTGAGGG TCTGCAGTGC 
TCGTGTGGCC CCGACTGGTA CACGGTGGGC ACGAAATACC GCAGCGAGTA CTACACGTGG 
TTCCTCTTCA TCTTCTGCTT CATCGTCCCC CTCTCCCTCA TCATCTTCTC CTACTCCCAA 
CTGCTGAGCG CCCTGCGAGC CGTGGCGGCG CAGCAGCAGG AGTCGGCCAC GACGCAGAAG 
GCGGAGCGGG AGGTGTCGCG GATGGTGGTG GTGATGGTGG GGTCGTTCTG CCTCTGCTAC 
GTCCCCTACG CCGCCCTCGC CATGTATATG GTCAACAACC GCGACCACGG CTTGGACCTC 
CGCCTCGTCA CCATCCCCGC CTTCTTCTCC AAGAGCGCCT GCGTCTACAA CCCCATCATC 
TACTGCTTCA TGAACAAGCA GTTCCGCGCC TGCATCATGG AGACGGTTTG CGGGAAGCCG 
CTGACGGACG ATTCGGACGC GTCGACTTCA GCGCAGAGGA CGGAGGTGTC CTCCGTGTCC 
TCCAGCCAAG TCGGCCCCAC TTAG