ccdc113 cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	ccdc113
Entrez Gene ID	450041
Full Name	coiled-coil domain containing 113
Synonyms	zgc:101745
General protein information	Preferred Names coiled-coil domain containing 113 Names coiled-coil domain-containing protein 113 zgc:101745 ccdc113
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001006061.1	NP_001006061.1	coiled-coil domain-containing protein 113

Pathways from BioSystems

Homologies

Bos taurus (cattle)	CCDC113	NP_001069378.1
Rattus norvegicus (Norway rat)	Ccdc113	XP_006255191.1
Homo sapiens (human)	CCDC113	NP_054876.2
Canis lupus familiaris (dog)	CCDC113	XP_544381.2
Gallus gallus (chicken)	CCDC113	XP_004944079.1
Pan troglodytes (chimpanzee)	CCDC113	XP_523504.2
Xenopus tropicalis (tropical clawed frog)	ccdc113	XP_002931703.2
	CCDC113	XP_001101506.1
Mus musculus (house mouse)	Ccdc113	NP_766502.1
Danio rerio (zebrafish)	ccdc113	NP_001006061.1

Gene Ontology
Bibliography

Related articles in PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

RNA-sequencing analysis of TCDD-induced responses in zebrafish liver reveals high relatedness to in vivo mammalian models and conserved biological pathways.
Li ZH, Xu H, Zheng W, Lam SH, Gong Z
PloS one8(10)e77292(2013)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following ccdc113 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the ccdc113 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa01501	NM_001006061.1 Latest version!	Danio rerio coiled-coil domain containing 113 (ccdc113), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$258.30 $369.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

ccdc113 ( NM_001006061.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001006061.1 Danio rerio coiled-coil domain containing 113 (ccdc113), mRNA.

Price & Availability↑

CloneID	ODa01501
Clone ID Related Accession (Same CDS sequence)	NM_001006061.1
Accession Version	NM_001006061.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1077bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2018-11-23
Organism	Danio rerio(zebrafish)
Product	coiled-coil domain-containing protein 113
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC083263.1. ##Evidence-Data-START## Transcript exon combination :: BC083263.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END##

ATGGCTGAAA TGACAGAGGA CAGCAAAAGC GACACAGCCC GAAAACAACT TGTTGAACTT 
GTGGATTTAA ATTTAACTTC CAATGCAGCG CTTAATGCAG AGATTGATTT GTTTGATCGA 
TATATTAGTC GACTGGACCT ACGGACGTTT GAAACAGTGT GGAAATGGCA GAATTTGTCA 
ACGGAAAAGA TTCCAGGAAG GAAAGCTAAA GTACGCACCC CAGGGAGACA ACAGCTCCTG 
ACATTGGAAC AGAAATGTGT TGTTGCCAAA AGCGTTTACA AAAAGATGAT TGAAGATTTG 
AAGATAGCGA AAATCCATTC AGAAAAACAG TTGGACAATT ACAAGGCAAC TCTGGAAGAA 
GCTGATATCC ACTTGGCGGA GATTAAAAAA GAACGCTCGC ATTTTAAACG CAACATTGTT 
GAAGAGCTGG AAGACAAAAA GAGCATGACA ATGAGTGCGG AGAAGGTCAT GAGATACATC 
GAGGACAAAA TAAAGGCCAA GGACATTTTG ATTGAGAAGT TGCACCGAAA AAATTCAGCA 
CTCCTCACAC ACAAGAAAAA ACAGCAAGCC CAGCTCAGAC AACAGGAGGA GATGGCTGAG 
GGTGTGACAG TGTTGGACTT TGAGCTGCTC AAGTTTGAGA ACATCAGATT TCGGAAGCAG 
CTGGATGAGC AAAACCTCAA ACAAGTGAAT CTCAAACTGC TTGCCGTGAA GACACTGCAG 
ACATTAAATT CTAATAAGGA GAAGCTTCAT ATCTTGACCA ATGAGTCAGA AATGCTGAGC 
AGTGACACGG CTTTGCGGAC GAAGTTGCTG GTTAAGATTG AGGAGGAGAC GGAGCAAGCG 
GAGGAGGAGC GACACAAAGC AGAGGCTCTA AACAGGAAGC TGAGGGACCA GTTGGCTGAC 
TTTCACGTAC CACATGTCCT CCAATATATC AAACTTAAAG AGTCCCATGG CCAGCTGCAG 
AAGAGTGTTA GAGAATGGGA ACGAAAAGTA GAGATTGCAG AGATGGCATT AAAAACCTAC 
ACAAAATCCT GGGACAAGCT TCGATTTGCT GCTGGAGCTG GACTAGTTCC TATATAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001006061.1
CDS	10..1086
Translation	MAEMTEDSKSDTARKQLVELVDLNLTSNAALNAEIDLFDRYISRLDLRTFETVWKWQNLSTEKIPGRKAKVRTPGRQQLLTLEQKCVVAKSVYKKMIEDLKIAKIHSEKQLDNYKATLEEADIHLAEIKKERSHFKRNIVEELEDKKSMTMSAEKVMRYIEDKIKAKDILIEKLHRKNSALLTHKKKQQAQLRQQEEMAEGVTVLDFELLKFENIRFRKQLDEQNLKQVNLKLLAVKTLQTLNSNKEKLHILTNESEMLSSDTALRTKLLVKIEEETEQAEEERHKAEALNRKLRDQLADFHVPHVLQYIKLKESHGQLQKSVREWERKVEIAEMALKTYTKSWDKLRFAAGAGLVPI

Target ORF information:

RefSeq Version	NM_001006061.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio coiled-coil domain containing 113 (ccdc113), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001006061.1

ORF Insert Sequence:

ATGGCTGAAA TGACAGAGGA CAGCAAAAGC GACACAGCCC GAAAACAACT TGTTGAACTT 
GTGGATTTAA ATTTAACTTC CAATGCAGCG CTTAATGCAG AGATTGATTT GTTTGATCGA 
TATATTAGTC GACTGGACCT ACGGACGTTT GAAACAGTGT GGAAATGGCA GAATTTGTCA 
ACGGAAAAGA TTCCAGGAAG GAAAGCTAAA GTACGCACCC CAGGGAGACA ACAGCTCCTG 
ACATTGGAAC AGAAATGTGT TGTTGCCAAA AGCGTTTACA AAAAGATGAT TGAAGATTTG 
AAGATAGCGA AAATCCATTC AGAAAAACAG TTGGACAATT ACAAGGCAAC TCTGGAAGAA 
GCTGATATCC ACTTGGCGGA GATTAAAAAA GAACGCTCGC ATTTTAAACG CAACATTGTT 
GAAGAGCTGG AAGACAAAAA GAGCATGACA ATGAGTGCGG AGAAGGTCAT GAGATACATC 
GAGGACAAAA TAAAGGCCAA GGACATTTTG ATTGAGAAGT TGCACCGAAA AAATTCAGCA 
CTCCTCACAC ACAAGAAAAA ACAGCAAGCC CAGCTCAGAC AACAGGAGGA GATGGCTGAG 
GGTGTGACAG TGTTGGACTT TGAGCTGCTC AAGTTTGAGA ACATCAGATT TCGGAAGCAG 
CTGGATGAGC AAAACCTCAA ACAAGTGAAT CTCAAACTGC TTGCCGTGAA GACACTGCAG 
ACATTAAATT CTAATAAGGA GAAGCTTCAT ATCTTGACCA ATGAGTCAGA AATGCTGAGC 
AGTGACACGG CTTTGCGGAC GAAGTTGCTG GTTAAGATTG AGGAGGAGAC GGAGCAAGCG 
GAGGAGGAGC GACACAAAGC AGAGGCTCTA AACAGGAAGC TGAGGGACCA GTTGGCTGAC 
TTTCACGTAC CACATGTCCT CCAATATATC AAACTTAAAG AGTCCCATGG CCAGCTGCAG 
AAGAGTGTTA GAGAATGGGA ACGAAAAGTA GAGATTGCAG AGATGGCATT AAAAACCTAC 
ACAAAATCCT GGGACAAGCT TCGATTTGCT GCTGGAGCTG GACTAGTTCC TATATAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

RNA-sequencing analysis of TCDD-induced responses in zebrafish liver reveals high relatedness to in vivo mammalian models and conserved biological pathways.
PloS one8(10)e77292(2013)
Li ZH,Xu H,Zheng W,Lam SH,Gong Z