SSX2IPA cDNA ORF clone, Danio rerio(Zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	SSX2IPA
Entrez Gene ID	393808
Full Name	synovial sarcoma, X breakpoint 2 interacting protein a
Synonyms	ssx2ip,zgc:73314
General protein information	Preferred Names synovial sarcoma, X breakpoint 2 interacting protein a Names afadin- and alpha-actinin-binding protein SSC2IP
Gene Type	protein-coding
Organism	Danio rerio(Zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_200835.2	NP_957129.2	afadin- and alpha-actinin-binding protein
XM_009296556.3	XP_009294831.1	afadin- and alpha-actinin-binding protein isoform X1
XM_009296556.2	XP_009294831.1	afadin- and alpha-actinin-binding protein isoform X1

Pathways from BioSystems

Homologies

Homo sapiens (human)	SSX2IP	NP_001159765.1
	SSX2IP	XP_001107793.1
Mus musculus (house mouse)	Ssx2ip	NP_620083.1
Danio rerio (zebrafish)	ssx2ip	NP_957129.2
Oryza sativa (rice)	Os08g0242900	NP_001061344.1
Xenopus tropicalis (tropical clawed frog)	ssx2ip	XP_002931745.2
Pan troglodytes (chimpanzee)	SSX2IP	XP_003308240.1
Bos taurus (cattle)	SSX2IP	NP_001069504.1
Rattus norvegicus (Norway rat)	Ssx2ip	NP_783187.1
Arabidopsis thaliana (thale cress)	AT2G18876	NP_849981.1
Canis lupus familiaris (dog)	SSX2IP	XP_005622055.1
Danio rerio (zebrafish)	LOC100534665	XP_003197861.2
Arabidopsis thaliana (thale cress)	AT5G57410	NP_568857.1
Gallus gallus (chicken)	SSX2IP	NP_001038121.1

Gene Ontology
Bibliography

Related articles in PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

Msd1/SSX2IP-dependent microtubule anchorage ensures spindle orientation and primary cilia formation.
Hori A, Ikebe C, Tada M, Toda T
EMBO reports15(2)175-84(2014 Feb)

Conservation of a vitellogenin gene cluster in oviparous vertebrates and identification of its traces in the platypus genome.
Babin PJ
Gene413(1-2)76-82(2008 Apr)

Functional analysis of human hematopoietic stem cell gene expression using zebrafish.
Eckfeldt CE, Mendenhall EM, Flynn CM, Wang TF, Pickart MA, Grindle SM, Ekker SC, Verfaillie CM
PLoS biology3(8)e254(2005 Aug)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following SSX2IPA gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the SSX2IPA cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)
ODa00975	NM_200835.2 Latest version!	Danio rerio synovial sarcoma, X breakpoint 2 interacting protein a (ssx2ipa), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$342.30 $489.00
ODa40528	XM_009296556.3 Latest version!	Danio rerio synovial sarcoma, X breakpoint 2 interacting protein a (ssx2ipa), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$342.30 $489.00
View Old Accession Versions >>
ODa40528	XM_009296556.2	Danio rerio synovial sarcoma, X breakpoint 2 interacting protein a (ssx2ipa), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$342.30 $489.00
Hide Old Accession Versions >>

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***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

SSX2IPA ( NM_200835.2 ) cDNA ORF clone, Danio rerio(Zebrafish) -> NP_957129.2 Danio rerio synovial sarcoma, X breakpoint 2 interacting protein a (ssx2ipa), mRNA.

Price & Availability↑

CloneID	ODa00975
Clone ID Related Accession (Same CDS sequence)	NM_200835.2
Accession Version	NM_200835.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1758bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2018-11-23
Organism	Danio rerio(zebrafish)
Product	afadin- and alpha-actinin-binding protein
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CU693488.12. On Sep 30, 2011 this sequence version replaced NM_200835.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: GDQH01001143.1, GDQQ01022699.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END##

ATGGGAGATT GGTGGAGTCC TGCAATGATG CCTGATCCAA CTCTCGACAC CAAAGAGCTT 
TCCAGTATTT CTGGGATCAG CATGTCTCCC TCCAGGCAAA ACTCCCAGCA TTCACTGCAC 
TCCACCATGG TTCTGCCCAA AAGCACCTAC AGTGTATTGA GTGCCTTCTG CACAGAGGAG 
AACATATCGC AGTGTGTCAC GTATATCAAT CAGGAAGTGT GTTCGCTGGG CTTGTCTGCA 
GTGAGTGTGG AGTGTAAATC GGGCAGTGTG AGTGCCGTGC CGGTGTTAAA TCTGCTGTAT 
GAAGTGCTGC AGCTGCAGAG GAGAGCTCAG CGCGGCCTGC AGGAGCTGGA GACTCAGCAG 
ATAAAGAACT GCAGTGACCT CGAGCATCTG CAGAACAACA ACTGCAGACT CAAAGATCAG 
CTGGAGCACA CCAGGAGAGA GAACTCGGGT CTGCACGAGG GCGAGCGACA GCTGCAGCTC 
AAGATCAAAA CACTACAGAA CTGCCTGAAG TCTGAGAAAG AGGAGGTACA GAAACTGCAG 
AGCATAATCT CCAGTCGTGC CACACAGTAC AATCATGACC TGAAGCGTAA AGAGAGAGAC 
TTCACTAAAC TGAAGGATCG CCTCAACCAG CTGCTCATGG ACAAACGGGA CAAGAAACTC 
TCCATTGAAG TGTCAAACTA TGTGGGACGG TCAGATGGCA AGAGAGGCCT CTGGAAGACG 
GGCAAGATGG AGGCTAGACA TGAGGGTGAG ATGTACAAGG CTCTGCTGAC CGATTACGAG 
GCACGGCAGA GATCTCTGAT GCTGGAGAAC TCGGAACTGA AGAAAGTGTT GCAGCACATG 
AAGAAGGACA TGATCGCTAT TCTCAGTCCG AAGAAACCCT GCGTTAAAGC AGAGCTCGCA 
GACGACAGCC TGGAGCAGGC TGGCTCTGAG TGTGAGGATG AGGCTGGCGA ATCCAGCAGA 
GAGACTCTGG AGCAGTCGTG TGAACAGGCC CGCGAGCAGC TCACCAACAG CATCCGCCTG 
CAGTGGAGGA AACTCAAGAG CCACATGGAG AGACTCGACA GCCAGGCATC ACTGGTGGCG 
TCTCAGGAGC GTGAGGCAGA GGAGCTGATC TCCAGGAAGG AGCAGGAGGA AGAGCTGCAG 
CGCATGAGAC TGGAGCTGCA GCAGTGTAAA GAGTTCATTC ACATGCAGCA GCAGCTCCTA 
CAGCAGCAGA TCAGCTCCCC GTGTGATGAA GAGACGGCTG CTCTGCTGAA CGACTGCTAC 
ACGCTGGAGG AGAAAGAGCG ACTGAAGGAG GAATGGAGAC TCTTTAATGA GCAGAAGAGG 
AACTTTGAGC GAGAAAGGAA GAATTTCACT GAAGCTGCCA TTCGTTTGGG ACACGAGAGG 
AAAGTGTTTG AGGAGGATCG GGCGGCATGG CTGAAGACAC AGTTTTTGAA CATGACTCCA 
TTTGTGGACC GTAAACGGCC GGCGCTGTCT GAACCTCACA GTGCATTATC AGTCGGCACA 
GAACCAGAGG CCAAACTGCA TTTGACTCCT CCGCTGTTCA CTAAGTCTCT GTCCAACTCC 
GTGTTCTGCA CTCCTAAAGC TGCGCCGGTG AAGATGCCCA CCACTGCTGA CCTCTACCGC 
ACACTAAACC TCATTCCAGA GAGCAGAGGT CAGGGGAAAT GTCAGAGTGC TGAGATGTTG 
AGCAGGTCGC GTTTGCGTAA TTCCTCCAGC GACTGCAGCG TGATCTCCCT GGTCAGGGAT 
GAAAACGGCT CTGTCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_957129.2
CDS	247..2004
Translation	MGDWWSPAMMPDPTLDTKELSSISGISMSPSRQNSQHSLHSTMVLPKSTYSVLSAFCTEENISQCVTYINQEVCSLGLSAVSVECKSGSVSAVPVLNLLYEVLQLQRRAQRGLQELETQQIKNCSDLEHLQNNNCRLKDQLEHTRRENSGLHEGERQLQLKIKTLQNCLKSEKEEVQKLQSIISSRATQYNHDLKRKERDFTKLKDRLNQLLMDKRDKKLSIEVSNYVGRSDGKRGLWKTGKMEARHEGEMYKALLTDYEARQRSLMLENSELKKVLQHMKKDMIAILSPKKPCVKAELADDSLEQAGSECEDEAGESSRETLEQSCEQAREQLTNSIRLQWRKLKSHMERLDSQASLVASQEREAEELISRKEQEEELQRMRLELQQCKEFIHMQQQLLQQQISSPCDEETAALLNDCYTLEEKERLKEEWRLFNEQKRNFERERKNFTEAAIRLGHERKVFEEDRAAWLKTQFLNMTPFVDRKRPALSEPHSALSVGTEPEAKLHLTPPLFTKSLSNSVFCTPKAAPVKMPTTADLYRTLNLIPESRGQGKCQSAEMLSRSRLRNSSSDCSVISLVRDENGSV

Target ORF information:

RefSeq Version	NM_200835.2
Organism	Danio rerio(zebrafish)
Definition	Danio rerio synovial sarcoma, X breakpoint 2 interacting protein a (ssx2ipa), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_200835.2

ORF Insert Sequence:

ATGGGAGATT GGTGGAGTCC TGCAATGATG CCTGATCCAA CTCTCGACAC CAAAGAGCTT 
TCCAGTATTT CTGGGATCAG CATGTCTCCC TCCAGGCAAA ACTCCCAGCA TTCACTGCAC 
TCCACCATGG TTCTGCCCAA AAGCACCTAC AGTGTATTGA GTGCCTTCTG CACAGAGGAG 
AACATATCGC AGTGTGTCAC GTATATCAAT CAGGAAGTGT GTTCGCTGGG CTTGTCTGCA 
GTGAGTGTGG AGTGTAAATC GGGCAGTGTG AGTGCCGTGC CGGTGTTAAA TCTGCTGTAT 
GAAGTGCTGC AGCTGCAGAG GAGAGCTCAG CGCGGCCTGC AGGAGCTGGA GACTCAGCAG 
ATAAAGAACT GCAGTGACCT CGAGCATCTG CAGAACAACA ACTGCAGACT CAAAGATCAG 
CTGGAGCACA CCAGGAGAGA GAACTCGGGT CTGCACGAGG GCGAGCGACA GCTGCAGCTC 
AAGATCAAAA CACTACAGAA CTGCCTGAAG TCTGAGAAAG AGGAGGTACA GAAACTGCAG 
AGCATAATCT CCAGTCGTGC CACACAGTAC AATCATGACC TGAAGCGTAA AGAGAGAGAC 
TTCACTAAAC TGAAGGATCG CCTCAACCAG CTGCTCATGG ACAAACGGGA CAAGAAACTC 
TCCATTGAAG TGTCAAACTA TGTGGGACGG TCAGATGGCA AGAGAGGCCT CTGGAAGACG 
GGCAAGATGG AGGCTAGACA TGAGGGTGAG ATGTACAAGG CTCTGCTGAC CGATTACGAG 
GCACGGCAGA GATCTCTGAT GCTGGAGAAC TCGGAACTGA AGAAAGTGTT GCAGCACATG 
AAGAAGGACA TGATCGCTAT TCTCAGTCCG AAGAAACCCT GCGTTAAAGC AGAGCTCGCA 
GACGACAGCC TGGAGCAGGC TGGCTCTGAG TGTGAGGATG AGGCTGGCGA ATCCAGCAGA 
GAGACTCTGG AGCAGTCGTG TGAACAGGCC CGCGAGCAGC TCACCAACAG CATCCGCCTG 
CAGTGGAGGA AACTCAAGAG CCACATGGAG AGACTCGACA GCCAGGCATC ACTGGTGGCG 
TCTCAGGAGC GTGAGGCAGA GGAGCTGATC TCCAGGAAGG AGCAGGAGGA AGAGCTGCAG 
CGCATGAGAC TGGAGCTGCA GCAGTGTAAA GAGTTCATTC ACATGCAGCA GCAGCTCCTA 
CAGCAGCAGA TCAGCTCCCC GTGTGATGAA GAGACGGCTG CTCTGCTGAA CGACTGCTAC 
ACGCTGGAGG AGAAAGAGCG ACTGAAGGAG GAATGGAGAC TCTTTAATGA GCAGAAGAGG 
AACTTTGAGC GAGAAAGGAA GAATTTCACT GAAGCTGCCA TTCGTTTGGG ACACGAGAGG 
AAAGTGTTTG AGGAGGATCG GGCGGCATGG CTGAAGACAC AGTTTTTGAA CATGACTCCA 
TTTGTGGACC GTAAACGGCC GGCGCTGTCT GAACCTCACA GTGCATTATC AGTCGGCACA 
GAACCAGAGG CCAAACTGCA TTTGACTCCT CCGCTGTTCA CTAAGTCTCT GTCCAACTCC 
GTGTTCTGCA CTCCTAAAGC TGCGCCGGTG AAGATGCCCA CCACTGCTGA CCTCTACCGC 
ACACTAAACC TCATTCCAGA GAGCAGAGGT CAGGGGAAAT GTCAGAGTGC TGAGATGTTG 
AGCAGGTCGC GTTTGCGTAA TTCCTCCAGC GACTGCAGCG TGATCTCCCT GGTCAGGGAT 
GAAAACGGCT CTGTCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

SSX2IPA ( XM_009296556.3 ) cDNA ORF clone, Danio rerio(Zebrafish) -> XP_009294831.1 Danio rerio synovial sarcoma, X breakpoint 2 interacting protein a (ssx2ipa), transcript variant X1, mRNA.

Price & Availability↑

CloneID	ODa40528
Clone ID Related Accession (Same CDS sequence)	XM_009296556.3 , XM_009296556.2
Accession Version	XM_009296556.3 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1755bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-06-14
Organism	Danio rerio(zebrafish)
Product	afadin- and alpha-actinin-binding protein isoform X1
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007113.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_009296556.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGGAGATT GGTGGAGTCC TGCAATGATG CCTGATCCAA CTCTCGACAC CAAAGAGCTT 
TCCAGTATTT CTGGGATCAG CATGTCTCCC TCCAGGCAAA ACTCCCAGCA TTCACTGCAC 
TCCACCATGG TTCTGCCCAA AAGCACCTAC AGTGTATTGA GTGCCTTCTG CACAGAGGAG 
AACATATCGC AGTGTGTCAC GTATATCAAT CAGGAAGTGT GTTCGCTGGG CTTGTCTGCA 
GTGAGTGTGG AGTGTAAATC GGGCAGTGTG AGTGCCGTGC CGGTGTTAAA TCTGCTGTAT 
GAAGTGCTGC AGCTGCAGAG GAGAGCTCAG CGCGGCCTGC AGGAGCTGGA GACTCAGCAG 
ATAAAGAACT GCAGTGACCT CGAGCATCTG CAGAACAACA ACTGCAGACT CAAAGATCAG 
CTGGAGCACA CCAGGAGAGA GAACTCGGGT CTGCACGAGG GCGAGCGACA GCTGCAGCTC 
AAGATCAAAA CACTACAGAA CTGCCTGAAG TCTGAGAAAG AGGAGGTACA GAAACTGCAG 
AGCATAATCT CCAGTCGTGC CACACAGTAC AATCATGACC TGAAGCGTAA AGAGAGAGAC 
TTCACTAAAC TGAAGGATCG CCTCAACCAG CTGCTCATGG ACAAACGGGA CAAGAAACTC 
TCCATTGAAG TGTCAAACTA TGTGGGACGG TCAGATGGCA AGAGAGGCCT CTGGAAGACG 
GGCAAGATGG AGGCTAGACA TGAGGGTGAG ATGTACAAGG CTCTGCTGAC CGATTACGAG 
GCACGGCAGA GATCTCTGAT GCTGGAGAAC TCGGAACTGA AGAAAGTGTT GCAGCACATG 
AAGAAGGACA TGATCGCTAT TCTCAGTCCG AAGAAACCCT GCGTTAAAGC AGAGCTCGCA 
GACGACAGCC TGGAGCAGGC TGGCTCTGAG TGTGAGGATG AGGCTGGCGA ATCCAGCAGA 
GAGACTCTGG AGCAGTCGTG TGAACAGGCC CGCGAGCAGC TCACCAACAG CATCCGCCTG 
CAGTGGAGGA AACTCAAGAG CCACATGGAG AGACTCGACA GCCAGGCATC ACTGGTGGCG 
TCTCAGGAGC GTGAGGCAGA GGAGCTGATC TCCAGGAAGG AGCAGGAGGA AGAGCTGCAG 
CGCATGAGAC TGGAGCTGCA GCAGTGTAAA GAGTTCATTC ACATGCAGCA GCAGCTCCTA 
CAGCAGATCA GCTCCCCGTG TGATGAAGAG ACGGCTGCTC TGCTGAACGA CTGCTACACG 
CTGGAGGAGA AAGAGCGACT GAAGGAGGAA TGGAGACTCT TTAATGAGCA GAAGAGGAAC 
TTTGAGCGAG AAAGGAAGAA TTTCACTGAA GCTGCCATTC GTTTGGGACA CGAGAGGAAA 
GTGTTTGAGG AGGATCGGGC GGCATGGCTG AAGACACAGT TTTTGAACAT GACTCCATTT 
GTGGACCGTA AACGGCCGGC GCTGTCTGAA CCTCACAGTG CATTATCAGT CGGCACAGAA 
CCAGAGGCCA AACTGCATTT GACTCCTCCG CTGTTCACTA AGTCTCTGTC CAACTCCGTG 
TTCTGCACTC CTAAAGCTGC GCCGGTGAAG ATGCCCACCA CTGCTGACCT CTACCGCACA 
CTAAACCTCA TTCCAGAGAG CAGAGGTCAG GGGAAATGTC AGAGTGCTGA GATGTTGAGC 
AGGTCGCGTT TGCGTAATTC CTCCAGCGAC TGCAGCGTGA TCTCCCTGGT CAGGGATGAA 
AACGGCTCTG TCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_009294831.1
CDS	223..1977
Translation	MGDWWSPAMMPDPTLDTKELSSISGISMSPSRQNSQHSLHSTMVLPKSTYSVLSAFCTEENISQCVTYINQEVCSLGLSAVSVECKSGSVSAVPVLNLLYEVLQLQRRAQRGLQELETQQIKNCSDLEHLQNNNCRLKDQLEHTRRENSGLHEGERQLQLKIKTLQNCLKSEKEEVQKLQSIISSRATQYNHDLKRKERDFTKLKDRLNQLLMDKRDKKLSIEVSNYVGRSDGKRGLWKTGKMEARHEGEMYKALLTDYEARQRSLMLENSELKKVLQHMKKDMIAILSPKKPCVKAELADDSLEQAGSECEDEAGESSRETLEQSCEQAREQLTNSIRLQWRKLKSHMERLDSQASLVASQEREAEELISRKEQEEELQRMRLELQQCKEFIHMQQQLLQQISSPCDEETAALLNDCYTLEEKERLKEEWRLFNEQKRNFERERKNFTEAAIRLGHERKVFEEDRAAWLKTQFLNMTPFVDRKRPALSEPHSALSVGTEPEAKLHLTPPLFTKSLSNSVFCTPKAAPVKMPTTADLYRTLNLIPESRGQGKCQSAEMLSRSRLRNSSSDCSVISLVRDENGSV

Target ORF information:

RefSeq Version	XM_009296556.3
Organism	Danio rerio(zebrafish)
Definition	Danio rerio synovial sarcoma, X breakpoint 2 interacting protein a (ssx2ipa), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_009296556.3

ORF Insert Sequence:

ATGGGAGATT GGTGGAGTCC TGCAATGATG CCTGATCCAA CTCTCGACAC CAAAGAGCTT 
TCCAGTATTT CTGGGATCAG CATGTCTCCC TCCAGGCAAA ACTCCCAGCA TTCACTGCAC 
TCCACCATGG TTCTGCCCAA AAGCACCTAC AGTGTATTGA GTGCCTTCTG CACAGAGGAG 
AACATATCGC AGTGTGTCAC GTATATCAAT CAGGAAGTGT GTTCGCTGGG CTTGTCTGCA 
GTGAGTGTGG AGTGTAAATC GGGCAGTGTG AGTGCCGTGC CGGTGTTAAA TCTGCTGTAT 
GAAGTGCTGC AGCTGCAGAG GAGAGCTCAG CGCGGCCTGC AGGAGCTGGA GACTCAGCAG 
ATAAAGAACT GCAGTGACCT CGAGCATCTG CAGAACAACA ACTGCAGACT CAAAGATCAG 
CTGGAGCACA CCAGGAGAGA GAACTCGGGT CTGCACGAGG GCGAGCGACA GCTGCAGCTC 
AAGATCAAAA CACTACAGAA CTGCCTGAAG TCTGAGAAAG AGGAGGTACA GAAACTGCAG 
AGCATAATCT CCAGTCGTGC CACACAGTAC AATCATGACC TGAAGCGTAA AGAGAGAGAC 
TTCACTAAAC TGAAGGATCG CCTCAACCAG CTGCTCATGG ACAAACGGGA CAAGAAACTC 
TCCATTGAAG TGTCAAACTA TGTGGGACGG TCAGATGGCA AGAGAGGCCT CTGGAAGACG 
GGCAAGATGG AGGCTAGACA TGAGGGTGAG ATGTACAAGG CTCTGCTGAC CGATTACGAG 
GCACGGCAGA GATCTCTGAT GCTGGAGAAC TCGGAACTGA AGAAAGTGTT GCAGCACATG 
AAGAAGGACA TGATCGCTAT TCTCAGTCCG AAGAAACCCT GCGTTAAAGC AGAGCTCGCA 
GACGACAGCC TGGAGCAGGC TGGCTCTGAG TGTGAGGATG AGGCTGGCGA ATCCAGCAGA 
GAGACTCTGG AGCAGTCGTG TGAACAGGCC CGCGAGCAGC TCACCAACAG CATCCGCCTG 
CAGTGGAGGA AACTCAAGAG CCACATGGAG AGACTCGACA GCCAGGCATC ACTGGTGGCG 
TCTCAGGAGC GTGAGGCAGA GGAGCTGATC TCCAGGAAGG AGCAGGAGGA AGAGCTGCAG 
CGCATGAGAC TGGAGCTGCA GCAGTGTAAA GAGTTCATTC ACATGCAGCA GCAGCTCCTA 
CAGCAGATCA GCTCCCCGTG TGATGAAGAG ACGGCTGCTC TGCTGAACGA CTGCTACACG 
CTGGAGGAGA AAGAGCGACT GAAGGAGGAA TGGAGACTCT TTAATGAGCA GAAGAGGAAC 
TTTGAGCGAG AAAGGAAGAA TTTCACTGAA GCTGCCATTC GTTTGGGACA CGAGAGGAAA 
GTGTTTGAGG AGGATCGGGC GGCATGGCTG AAGACACAGT TTTTGAACAT GACTCCATTT 
GTGGACCGTA AACGGCCGGC GCTGTCTGAA CCTCACAGTG CATTATCAGT CGGCACAGAA 
CCAGAGGCCA AACTGCATTT GACTCCTCCG CTGTTCACTA AGTCTCTGTC CAACTCCGTG 
TTCTGCACTC CTAAAGCTGC GCCGGTGAAG ATGCCCACCA CTGCTGACCT CTACCGCACA 
CTAAACCTCA TTCCAGAGAG CAGAGGTCAG GGGAAATGTC AGAGTGCTGA GATGTTGAGC 
AGGTCGCGTT TGCGTAATTC CTCCAGCGAC TGCAGCGTGA TCTCCCTGGT CAGGGATGAA 
AACGGCTCTG TCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

SSX2IPA ( XM_009296556.2 ) cDNA ORF clone, Danio rerio(Zebrafish) -> XP_009294831.1 Danio rerio synovial sarcoma, X breakpoint 2 interacting protein a (ssx2ipa), transcript variant X1, mRNA.

Price & Availability↑

CloneID	ODa40528
Clone ID Related Accession (Same CDS sequence)	XM_009296556.3 , XM_009296556.2
Accession Version	XM_009296556.2	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1755bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-06-23
Organism	Danio rerio(Zebrafish)
Product	afadin- and alpha-actinin-binding protein isoform X1
Comment	MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007113.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_009296556.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGGAGATT GGTGGAGTCC TGCAATGATG CCTGATCCAA CTCTCGACAC CAAAGAGCTT 
TCCAGTATTT CTGGGATCAG CATGTCTCCC TCCAGGCAAA ACTCCCAGCA TTCACTGCAC 
TCCACCATGG TTCTGCCCAA AAGCACCTAC AGTGTATTGA GTGCCTTCTG CACAGAGGAG 
AACATATCGC AGTGTGTCAC GTATATCAAT CAGGAAGTGT GTTCGCTGGG CTTGTCTGCA 
GTGAGTGTGG AGTGTAAATC GGGCAGTGTG AGTGCCGTGC CGGTGTTAAA TCTGCTGTAT 
GAAGTGCTGC AGCTGCAGAG GAGAGCTCAG CGCGGCCTGC AGGAGCTGGA GACTCAGCAG 
ATAAAGAACT GCAGTGACCT CGAGCATCTG CAGAACAACA ACTGCAGACT CAAAGATCAG 
CTGGAGCACA CCAGGAGAGA GAACTCGGGT CTGCACGAGG GCGAGCGACA GCTGCAGCTC 
AAGATCAAAA CACTACAGAA CTGCCTGAAG TCTGAGAAAG AGGAGGTACA GAAACTGCAG 
AGCATAATCT CCAGTCGTGC CACACAGTAC AATCATGACC TGAAGCGTAA AGAGAGAGAC 
TTCACTAAAC TGAAGGATCG CCTCAACCAG CTGCTCATGG ACAAACGGGA CAAGAAACTC 
TCCATTGAAG TGTCAAACTA TGTGGGACGG TCAGATGGCA AGAGAGGCCT CTGGAAGACG 
GGCAAGATGG AGGCTAGACA TGAGGGTGAG ATGTACAAGG CTCTGCTGAC CGATTACGAG 
GCACGGCAGA GATCTCTGAT GCTGGAGAAC TCGGAACTGA AGAAAGTGTT GCAGCACATG 
AAGAAGGACA TGATCGCTAT TCTCAGTCCG AAGAAACCCT GCGTTAAAGC AGAGCTCGCA 
GACGACAGCC TGGAGCAGGC TGGCTCTGAG TGTGAGGATG AGGCTGGCGA ATCCAGCAGA 
GAGACTCTGG AGCAGTCGTG TGAACAGGCC CGCGAGCAGC TCACCAACAG CATCCGCCTG 
CAGTGGAGGA AACTCAAGAG CCACATGGAG AGACTCGACA GCCAGGCATC ACTGGTGGCG 
TCTCAGGAGC GTGAGGCAGA GGAGCTGATC TCCAGGAAGG AGCAGGAGGA AGAGCTGCAG 
CGCATGAGAC TGGAGCTGCA GCAGTGTAAA GAGTTCATTC ACATGCAGCA GCAGCTCCTA 
CAGCAGATCA GCTCCCCGTG TGATGAAGAG ACGGCTGCTC TGCTGAACGA CTGCTACACG 
CTGGAGGAGA AAGAGCGACT GAAGGAGGAA TGGAGACTCT TTAATGAGCA GAAGAGGAAC 
TTTGAGCGAG AAAGGAAGAA TTTCACTGAA GCTGCCATTC GTTTGGGACA CGAGAGGAAA 
GTGTTTGAGG AGGATCGGGC GGCATGGCTG AAGACACAGT TTTTGAACAT GACTCCATTT 
GTGGACCGTA AACGGCCGGC GCTGTCTGAA CCTCACAGTG CATTATCAGT CGGCACAGAA 
CCAGAGGCCA AACTGCATTT GACTCCTCCG CTGTTCACTA AGTCTCTGTC CAACTCCGTG 
TTCTGCACTC CTAAAGCTGC GCCGGTGAAG ATGCCCACCA CTGCTGACCT CTACCGCACA 
CTAAACCTCA TTCCAGAGAG CAGAGGTCAG GGGAAATGTC AGAGTGCTGA GATGTTGAGC 
AGGTCGCGTT TGCGTAATTC CTCCAGCGAC TGCAGCGTGA TCTCCCTGGT CAGGGATGAA 
AACGGCTCTG TCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_009294831.1
CDS	243..1997
Translation	MGDWWSPAMMPDPTLDTKELSSISGISMSPSRQNSQHSLHSTMVLPKSTYSVLSAFCTEENISQCVTYINQEVCSLGLSAVSVECKSGSVSAVPVLNLLYEVLQLQRRAQRGLQELETQQIKNCSDLEHLQNNNCRLKDQLEHTRRENSGLHEGERQLQLKIKTLQNCLKSEKEEVQKLQSIISSRATQYNHDLKRKERDFTKLKDRLNQLLMDKRDKKLSIEVSNYVGRSDGKRGLWKTGKMEARHEGEMYKALLTDYEARQRSLMLENSELKKVLQHMKKDMIAILSPKKPCVKAELADDSLEQAGSECEDEAGESSRETLEQSCEQAREQLTNSIRLQWRKLKSHMERLDSQASLVASQEREAEELISRKEQEEELQRMRLELQQCKEFIHMQQQLLQQISSPCDEETAALLNDCYTLEEKERLKEEWRLFNEQKRNFERERKNFTEAAIRLGHERKVFEEDRAAWLKTQFLNMTPFVDRKRPALSEPHSALSVGTEPEAKLHLTPPLFTKSLSNSVFCTPKAAPVKMPTTADLYRTLNLIPESRGQGKCQSAEMLSRSRLRNSSSDCSVISLVRDENGSV

Target ORF information:

RefSeq Version	XM_009296556.2
Organism	Danio rerio(Zebrafish)
Definition	Danio rerio synovial sarcoma, X breakpoint 2 interacting protein a (ssx2ipa), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_009296556.2

ORF Insert Sequence:

ATGGGAGATT GGTGGAGTCC TGCAATGATG CCTGATCCAA CTCTCGACAC CAAAGAGCTT 
TCCAGTATTT CTGGGATCAG CATGTCTCCC TCCAGGCAAA ACTCCCAGCA TTCACTGCAC 
TCCACCATGG TTCTGCCCAA AAGCACCTAC AGTGTATTGA GTGCCTTCTG CACAGAGGAG 
AACATATCGC AGTGTGTCAC GTATATCAAT CAGGAAGTGT GTTCGCTGGG CTTGTCTGCA 
GTGAGTGTGG AGTGTAAATC GGGCAGTGTG AGTGCCGTGC CGGTGTTAAA TCTGCTGTAT 
GAAGTGCTGC AGCTGCAGAG GAGAGCTCAG CGCGGCCTGC AGGAGCTGGA GACTCAGCAG 
ATAAAGAACT GCAGTGACCT CGAGCATCTG CAGAACAACA ACTGCAGACT CAAAGATCAG 
CTGGAGCACA CCAGGAGAGA GAACTCGGGT CTGCACGAGG GCGAGCGACA GCTGCAGCTC 
AAGATCAAAA CACTACAGAA CTGCCTGAAG TCTGAGAAAG AGGAGGTACA GAAACTGCAG 
AGCATAATCT CCAGTCGTGC CACACAGTAC AATCATGACC TGAAGCGTAA AGAGAGAGAC 
TTCACTAAAC TGAAGGATCG CCTCAACCAG CTGCTCATGG ACAAACGGGA CAAGAAACTC 
TCCATTGAAG TGTCAAACTA TGTGGGACGG TCAGATGGCA AGAGAGGCCT CTGGAAGACG 
GGCAAGATGG AGGCTAGACA TGAGGGTGAG ATGTACAAGG CTCTGCTGAC CGATTACGAG 
GCACGGCAGA GATCTCTGAT GCTGGAGAAC TCGGAACTGA AGAAAGTGTT GCAGCACATG 
AAGAAGGACA TGATCGCTAT TCTCAGTCCG AAGAAACCCT GCGTTAAAGC AGAGCTCGCA 
GACGACAGCC TGGAGCAGGC TGGCTCTGAG TGTGAGGATG AGGCTGGCGA ATCCAGCAGA 
GAGACTCTGG AGCAGTCGTG TGAACAGGCC CGCGAGCAGC TCACCAACAG CATCCGCCTG 
CAGTGGAGGA AACTCAAGAG CCACATGGAG AGACTCGACA GCCAGGCATC ACTGGTGGCG 
TCTCAGGAGC GTGAGGCAGA GGAGCTGATC TCCAGGAAGG AGCAGGAGGA AGAGCTGCAG 
CGCATGAGAC TGGAGCTGCA GCAGTGTAAA GAGTTCATTC ACATGCAGCA GCAGCTCCTA 
CAGCAGATCA GCTCCCCGTG TGATGAAGAG ACGGCTGCTC TGCTGAACGA CTGCTACACG 
CTGGAGGAGA AAGAGCGACT GAAGGAGGAA TGGAGACTCT TTAATGAGCA GAAGAGGAAC 
TTTGAGCGAG AAAGGAAGAA TTTCACTGAA GCTGCCATTC GTTTGGGACA CGAGAGGAAA 
GTGTTTGAGG AGGATCGGGC GGCATGGCTG AAGACACAGT TTTTGAACAT GACTCCATTT 
GTGGACCGTA AACGGCCGGC GCTGTCTGAA CCTCACAGTG CATTATCAGT CGGCACAGAA 
CCAGAGGCCA AACTGCATTT GACTCCTCCG CTGTTCACTA AGTCTCTGTC CAACTCCGTG 
TTCTGCACTC CTAAAGCTGC GCCGGTGAAG ATGCCCACCA CTGCTGACCT CTACCGCACA 
CTAAACCTCA TTCCAGAGAG CAGAGGTCAG GGGAAATGTC AGAGTGCTGA GATGTTGAGC 
AGGTCGCGTT TGCGTAATTC CTCCAGCGAC TGCAGCGTGA TCTCCCTGGT CAGGGATGAA 
AACGGCTCTG TCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

Msd1/SSX2IP-dependent microtubule anchorage ensures spindle orientation and primary cilia formation.
EMBO reports15(2)175-84(2014 Feb)
Hori A,Ikebe C,Tada M,Toda T

Conservation of a vitellogenin gene cluster in oviparous vertebrates and identification of its traces in the platypus genome.
Gene413(1-2)76-82(2008 Apr)
Babin PJ

Functional analysis of human hematopoietic stem cell gene expression using zebrafish.
PLoS biology3(8)e254(2005 Aug)
Eckfeldt CE,Mendenhall EM,Flynn CM,Wang TF,Pickart MA,Grindle SM,Ekker SC,Verfaillie CM