ssu72 cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	ssu72
Entrez Gene ID	393701
Full Name	SSU72 homolog, RNA polymerase II CTD phosphatase
Synonyms	zgc:73143
General protein information	Preferred Names SSU72 homolog, RNA polymerase II CTD phosphatase Names RNA polymerase II subunit A C-terminal domain phosphatase SSU72 CTD phosphatase SSU72 SSU72 RNA polymerase II CTD phosphatase homolog
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_200728.1	NP_957022.1	RNA polymerase II subunit A C-terminal domain phosphatase SSU72

Pathways from BioSystems

Homologies

Danio rerio (zebrafish)	ssu72	NP_957022.1
Anopheles gambiae (African malaria mosquito)	AgaP_AGAP011470	XP_317836.3
Schizosaccharomyces pombe (fission yeast)	ssu72	NP_594076.1
Oryza sativa (rice)	Os12g0168200	NP_001066253.1
Xenopus tropicalis (tropical clawed frog)	ssu72	NP_001016264.1
	SSU72	XP_001094964.1
Mus musculus (house mouse)	Ssu72	NP_081175.2
Gallus gallus (chicken)	SSU72	NP_001007876.1
Drosophila melanogaster (fruit fly)	Ssu72	NP_608342.1
Caenorhabditis elegans (roundworm)	ssup-72	NP_495386.3
Kluyveromyces lactis	KLLA0D19514g	XP_453928.1
Bos taurus (cattle)	SSU72	NP_001069817.1
Homo sapiens (human)	SSU72	NP_054907.1
Canis lupus familiaris (dog)	SSU72	NP_001239254.1
Eremothecium gossypii	AGOS_ABL190W	NP_982757.1
Magnaporthe oryzae (rice blast fungus)	MGG_03704	XP_003716177.1
Neurospora crassa	NCU03114	XP_964973.1
Arabidopsis thaliana (thale cress)	AT1G73820	NP_177523.1
Pan troglodytes (chimpanzee)	SSU72	XP_001147261.1
Rattus norvegicus (Norway rat)	Ssu72	NP_001020828.1
Saccharomyces cerevisiae (baker's yeast)	SSU72	NP_014177.1

Gene Ontology
Bibliography

Related articles in PubMed

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

Identification, characterization, and mapping of expressed sequence tags from an embryonic zebrafish heart cDNA library.
Ton C, Hwang DM, Dempsey AA, Tang HC, Yoon J, Lim M, Mably JD, Fishman MC, Liew CC
Genome research10(12)1915-27(2000 Dec)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following ssu72 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the ssu72 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa37966	NM_200728.1 Latest version!	Danio rerio SSU72 homolog, RNA polymerase II CTD phosphatase (ssu72), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$104.30 $149.00

ORF Online Only Promotion

Next-day Shipping ORF Clones ( in default vector with tag)
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2-4 Clone	40% OFF
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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

ssu72 ( NM_200728.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_957022.1 Danio rerio SSU72 homolog, RNA polymerase II CTD phosphatase (ssu72), mRNA.

Price & Availability↑

CloneID	ODa37966
Clone ID Related Accession (Same CDS sequence)	NM_200728.1
Accession Version	NM_200728.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 585bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-11-15
Organism	Danio rerio(zebrafish)
Product	RNA polymerase II subunit A C-terminal domain phosphatase SSU72
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC059504.1. On Jul 6, 2005 this sequence version replaced XM_694210.1. ##Evidence-Data-START## Transcript exon combination :: EH492326.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA3505370, SAMEA3505371 [ECO:0000350] ##Evidence-Data-END##

ATGCCGCCTC ATCCGCTGCG TGTCGCGGTC GTGTGCTCCA GCAACCAGAA CCGCAGCATG 
GAAGCGCACA ACATCCTGAG CAAGCGAGGG TTCGACGTGC GCTCCTTCGG CACAGGGACA 
CATGTGAAAC TCCCTGGACC CGCACCGGAC AAACCCAACA TTTACGACTT CAAAACCACT 
TATGAGCAGA TGTACAACGA CTTGGTCCGT AAAGACAAGG AACTATACAC ACAGAACGGC 
ATCCTGCACA TGCTGGACCG CAACAAGCGC ATCAAGTCTC GTCCCGAACG CTTCCAGAGC 
TGCAGAGACC AGTTTGACCT GGTGATCACC TGTGAGGAGC GAGTCTACGA CCAGGTGCTG 
GAGGACCTGA ACTCTCGTGA GCAGGAGTCG TTCCAGCCGG TTCATGTCAT CAATGTGGAC 
ATTCAGGATA ATCATGAAGA GGCGACGCTC GGAGCTTTCC TCATCTGTGA ACTCTGCCAG 
TGTATTCAGC ACACAGACGA TATGGAGAAC GAGATGGACG AGCTGCTGCA GGAGTTCGAG 
GAGAAGAGCC ATCGGCCGTT CCTGCACAGC GTCTGCTTTT ACTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_957022.1
CDS	70..654
Translation	MPPHPLRVAVVCSSNQNRSMEAHNILSKRGFDVRSFGTGTHVKLPGPAPDKPNIYDFKTTYEQMYNDLVRKDKELYTQNGILHMLDRNKRIKSRPERFQSCRDQFDLVITCEERVYDQVLEDLNSREQESFQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTDDMENEMDELLQEFEEKSHRPFLHSVCFY

Target ORF information:

RefSeq Version	NM_200728.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio SSU72 homolog, RNA polymerase II CTD phosphatase (ssu72), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_200728.1

ORF Insert Sequence:

ATGCCGCCTC ATCCGCTGCG TGTCGCGGTC GTGTGCTCCA GCAACCAGAA CCGCAGCATG 
GAAGCGCACA ACATCCTGAG CAAGCGAGGG TTCGACGTGC GCTCCTTCGG CACAGGGACA 
CATGTGAAAC TCCCTGGACC CGCACCGGAC AAACCCAACA TTTACGACTT CAAAACCACT 
TATGAGCAGA TGTACAACGA CTTGGTCCGT AAAGACAAGG AACTATACAC ACAGAACGGC 
ATCCTGCACA TGCTGGACCG CAACAAGCGC ATCAAGTCTC GTCCCGAACG CTTCCAGAGC 
TGCAGAGACC AGTTTGACCT GGTGATCACC TGTGAGGAGC GAGTCTACGA CCAGGTGCTG 
GAGGACCTGA ACTCTCGTGA GCAGGAGTCG TTCCAGCCGG TTCATGTCAT CAATGTGGAC 
ATTCAGGATA ATCATGAAGA GGCGACGCTC GGAGCTTTCC TCATCTGTGA ACTCTGCCAG 
TGTATTCAGC ACACAGACGA TATGGAGAAC GAGATGGACG AGCTGCTGCA GGAGTTCGAG 
GAGAAGAGCC ATCGGCCGTT CCTGCACAGC GTCTGCTTTT ACTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

Identification, characterization, and mapping of expressed sequence tags from an embryonic zebrafish heart cDNA library.
Genome research10(12)1915-27(2000 Dec)
Ton C,Hwang DM,Dempsey AA,Tang HC,Yoon J,Lim M,Mably JD,Fishman MC,Liew CC