si:busm1-48c11.3 cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	si:busm1-48c11.3
Entrez Gene ID	368614
Full Name	si:busm1-48c11.3
Synonyms	si:dz48c11.3
General protein information	Preferred Names si:busm1-48c11.3 Names uncharacterized protein LOC368614 MHC class II alpha chain
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001007205.1	NP_001007206.1	uncharacterized protein LOC368614 precursor
NM_001007205.2	NP_001007206.1	si:busm1-48c11.3 precursor

Pathways from BioSystems

Homologies

Homo sapiens (human)	HLA-DPA1	NP_001229453.1
	MAMU-DPA	NP_001041712.1
Danio rerio (zebrafish)	LOC795595	XP_005165043.1
Danio rerio (zebrafish)	LOC100332204	XP_002660434.3
Danio rerio (zebrafish)	zgc:123107	NP_001032481.2
Danio rerio (zebrafish)	LOC571282	XP_699949.2
Pan troglodytes (chimpanzee)	PATR-DPA1	XP_518390.2
Danio rerio (zebrafish)	si:busm1-194e12.8	XP_005167290.1
Danio rerio (zebrafish)	si:busm1-48c11.3	NP_001007206.1
Danio rerio (zebrafish)	zgc:103599	NP_001005975.1
Danio rerio (zebrafish)	LOC100332267	XP_002660435.3
Danio rerio (zebrafish)	si:busm1-266f07.2	NP_001004521.2
Danio rerio (zebrafish)	si:busm1-160c18.6	NP_001007049.2

Gene Ontology
Bibliography

Related articles in PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

Comprehensive analysis of MHC class II genes in teleost fish genomes reveals dispensability of the peptide-loading DM system in a large part of vertebrates.
Dijkstra JM, Grimholt U, Leong J, Koop BF, Hashimoto K
BMC evolutionary biology13260(2013 Nov)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following si:busm1-48c11.3 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the si:busm1-48c11.3 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)
ODa01693	NM_001007205.2 Latest version!	Danio rerio si:busm1-48c11.3 (si:busm1-48c11.3), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$174.30 $249.00
View Old Accession Versions >>
ODa01693	NM_001007205.1	Danio rerio si:busm1-48c11.3 (si:busm1-48c11.3), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$174.30 $249.00
Hide Old Accession Versions >>

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

si:busm1-48c11.3 ( NM_001007205.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001007206.1 Danio rerio si:busm1-48c11.3 (si:busm1-48c11.3), mRNA.

Price & Availability↑

CloneID	ODa01693
Clone ID Related Accession (Same CDS sequence)	NM_001007205.1 , NM_001007205.2
Accession Version	NM_001007205.1	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 711bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-08-05
Organism	Danio rerio(zebrafish)
Product	uncharacterized protein LOC368614 precursor
Comment	Comment: PREDICTED REFSEQ: This record has not been reviewed and the function is unknown. The reference sequence was derived from AL591172.3. ##Evidence-Data-START## Transcript exon combination :: DT070458.1, CN014414.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168447 [ECO:0000348] ##Evidence-Data-END##

ATGGAGCTAT ACATAACCAC TCTTGTCCTA ACTATTATTC TCTCAGCTGG TGCTAAAGTT 
GTGCATGAAG ATTTTGCCAT TCGTGGATGC TCTGATACAG AAAAAGAAGA CACGTATGGA 
ATGGACGAAG AGGAATTGTG GCATGCTGAC TTTAATCAAA AGAAGGGAGT AGAAACATTA 
CCTGATTTTG GAGACCCAAT GACATTCCCT GGATTTTATG AAGGCAGCGA GGGTGAAATG 
GCAGTCTGCA AAAGTAACTT AGCCTTAAGG ATTAAAGGAT TCAAGAGCCC ACCACCAGAA 
ATGGATGCAC CCCAGACATC TATATATCCA AAAGATGATG TAGAGCTGGG TGTTCAAAAC 
ACCCTTGTCT GTCATGTGAC TGGCTTCTAT CCTCCATCTG TCAGTGTCTC ATGGACTAAG 
AATAATATTA ATGTGTCAGA GGACATTACT TTAAGCCAGT ATCGTCCACG GATAGATGGC 
ACCTTTAACA TATTCTCCAC CCTTAAGTTC ACACCTGCTG AAGGAGACAT TTATAGTTGC 
ATGGTAAAGC ATAGAGCCAT CAAGGATCAG CCACAAACCA AAACATGGGA TGTTGATGCT 
GTCCTCCCAA GTGTTGGTCC AGCAGTTTTC TGTGGAATCG GTCTGACTCT TGGATTGCTG 
GGCGTAGCTG TTGGAACATT CTTCCTTGTT AAAGGAAATA ACTGCAACTG A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001007206.1
CDS	8..718
Translation	MELYITTLVLTIILSAGAKVVHEDFAIRGCSDTEKEDTYGMDEEELWHADFNQKKGVETLPDFGDPMTFPGFYEGSEGEMAVCKSNLALRIKGFKSPPPEMDAPQTSIYPKDDVELGVQNTLVCHVTGFYPPSVSVSWTKNNINVSEDITLSQYRPRIDGTFNIFSTLKFTPAEGDIYSCMVKHRAIKDQPQTKTWDVDAVLPSVGPAVFCGIGLTLGLLGVAVGTFFLVKGNNCN

Target ORF information:

RefSeq Version	NM_001007205.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio si:busm1-48c11.3 (si:busm1-48c11.3), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001007205.1

ORF Insert Sequence:

ATGGAGCTAT ACATAACCAC TCTTGTCCTA ACTATTATTC TCTCAGCTGG TGCTAAAGTT 
GTGCATGAAG ATTTTGCCAT TCGTGGATGC TCTGATACAG AAAAAGAAGA CACGTATGGA 
ATGGACGAAG AGGAATTGTG GCATGCTGAC TTTAATCAAA AGAAGGGAGT AGAAACATTA 
CCTGATTTTG GAGACCCAAT GACATTCCCT GGATTTTATG AAGGCAGCGA GGGTGAAATG 
GCAGTCTGCA AAAGTAACTT AGCCTTAAGG ATTAAAGGAT TCAAGAGCCC ACCACCAGAA 
ATGGATGCAC CCCAGACATC TATATATCCA AAAGATGATG TAGAGCTGGG TGTTCAAAAC 
ACCCTTGTCT GTCATGTGAC TGGCTTCTAT CCTCCATCTG TCAGTGTCTC ATGGACTAAG 
AATAATATTA ATGTGTCAGA GGACATTACT TTAAGCCAGT ATCGTCCACG GATAGATGGC 
ACCTTTAACA TATTCTCCAC CCTTAAGTTC ACACCTGCTG AAGGAGACAT TTATAGTTGC 
ATGGTAAAGC ATAGAGCCAT CAAGGATCAG CCACAAACCA AAACATGGGA TGTTGATGCT 
GTCCTCCCAA GTGTTGGTCC AGCAGTTTTC TGTGGAATCG GTCTGACTCT TGGATTGCTG 
GGCGTAGCTG TTGGAACATT CTTCCTTGTT AAAGGAAATA ACTGCAACTG A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

si:busm1-48c11.3 ( NM_001007205.2 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001007206.1 Danio rerio si:busm1-48c11.3 (si:busm1-48c11.3), mRNA.

Price & Availability↑

CloneID	ODa01693
Clone ID Related Accession (Same CDS sequence)	NM_001007205.1 , NM_001007205.2
Accession Version	NM_001007205.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 711bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-03-21
Organism	Danio rerio(zebrafish)
Product	si:busm1-48c11.3 precursor
Comment	Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CU929676.6. On or before Oct 19, 2018 this sequence version replaced NM_001004534.2, NM_001007205.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: EH447306.1, EH434751.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168447 [ECO:0000348] ##Evidence-Data-END##

ATGGAGCTAT ACATAACCAC TCTTGTCCTA ACTATTATTC TCTCAGCTGG TGCTAAAGTT 
GTGCATGAAG ATTTTGCCAT TCGTGGATGC TCTGATACAG AAAAAGAAGA CACGTATGGA 
ATGGACGAAG AGGAATTGTG GCATGCTGAC TTTAATCAAA AGAAGGGAGT AGAAACATTA 
CCTGATTTTG GAGACCCAAT GACATTCCCT GGATTTTATG AAGGCAGCGA GGGTGAAATG 
GCAGTCTGCA AAAGTAACTT AGCCTTAAGG ATTAAAGGAT TCAAGAGCCC ACCACCAGAA 
ATGGATGCAC CCCAGACATC TATATATCCA AAAGATGATG TAGAGCTGGG TGTTCAAAAC 
ACCCTTGTCT GTCATGTGAC TGGCTTCTAT CCTCCATCTG TCAGTGTCTC ATGGACTAAG 
AATAATATTA ATGTGTCAGA GGACATTACT TTAAGCCAGT ATCGTCCACG GATAGATGGC 
ACCTTTAACA TATTCTCCAC CCTTAAGTTC ACACCTGCTG AAGGAGACAT TTATAGTTGC 
ATGGTAAAGC ATAGAGCCAT CAAGGATCAG CCACAAACCA AAACATGGGA TGTTGATGCT 
GTCCTCCCAA GTGTTGGTCC AGCAGTTTTC TGTGGAATCG GTCTGACTCT TGGATTGCTG 
GGCGTAGCTG TTGGAACATT CTTCCTTGTT AAAGGAAATA ACTGCAACTG A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001007206.1
CDS	45..755
Translation	MELYITTLVLTIILSAGAKVVHEDFAIRGCSDTEKEDTYGMDEEELWHADFNQKKGVETLPDFGDPMTFPGFYEGSEGEMAVCKSNLALRIKGFKSPPPEMDAPQTSIYPKDDVELGVQNTLVCHVTGFYPPSVSVSWTKNNINVSEDITLSQYRPRIDGTFNIFSTLKFTPAEGDIYSCMVKHRAIKDQPQTKTWDVDAVLPSVGPAVFCGIGLTLGLLGVAVGTFFLVKGNNCN

Target ORF information:

RefSeq Version	NM_001007205.2
Organism	Danio rerio(zebrafish)
Definition	Danio rerio si:busm1-48c11.3 (si:busm1-48c11.3), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001007205.2

ORF Insert Sequence:

ATGGAGCTAT ACATAACCAC TCTTGTCCTA ACTATTATTC TCTCAGCTGG TGCTAAAGTT 
GTGCATGAAG ATTTTGCCAT TCGTGGATGC TCTGATACAG AAAAAGAAGA CACGTATGGA 
ATGGACGAAG AGGAATTGTG GCATGCTGAC TTTAATCAAA AGAAGGGAGT AGAAACATTA 
CCTGATTTTG GAGACCCAAT GACATTCCCT GGATTTTATG AAGGCAGCGA GGGTGAAATG 
GCAGTCTGCA AAAGTAACTT AGCCTTAAGG ATTAAAGGAT TCAAGAGCCC ACCACCAGAA 
ATGGATGCAC CCCAGACATC TATATATCCA AAAGATGATG TAGAGCTGGG TGTTCAAAAC 
ACCCTTGTCT GTCATGTGAC TGGCTTCTAT CCTCCATCTG TCAGTGTCTC ATGGACTAAG 
AATAATATTA ATGTGTCAGA GGACATTACT TTAAGCCAGT ATCGTCCACG GATAGATGGC 
ACCTTTAACA TATTCTCCAC CCTTAAGTTC ACACCTGCTG AAGGAGACAT TTATAGTTGC 
ATGGTAAAGC ATAGAGCCAT CAAGGATCAG CCACAAACCA AAACATGGGA TGTTGATGCT 
GTCCTCCCAA GTGTTGGTCC AGCAGTTTTC TGTGGAATCG GTCTGACTCT TGGATTGCTG 
GGCGTAGCTG TTGGAACATT CTTCCTTGTT AAAGGAAATA ACTGCAACTG A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

Comprehensive analysis of MHC class II genes in teleost fish genomes reveals dispensability of the peptide-loading DM system in a large part of vertebrates.
BMC evolutionary biology13260(2013 Nov)
Dijkstra JM,Grimholt U,Leong J,Koop BF,Hashimoto K