hoxa11b cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	hoxa11b
Entrez Gene ID	30382
Full Name	homeobox A11b
Synonyms	Hoxa-11,hoxa11,im:7142641
General protein information	Preferred Names homeobox A11b Names homeobox protein Hox-A11b homeo box A11b homeobox gene A-11 hox-A11
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_131147.1	NP_571222.1	homeobox protein Hox-A11b

Pathways from BioSystems

Homologies

Pan troglodytes (chimpanzee)	HOXA11	XP_519012.3
Rattus norvegicus (Norway rat)	LOC100911743	XP_003752232.1
Gallus gallus (chicken)	LOC100859078	XP_003640763.1
Gallus gallus (chicken)	LOC100858967	XP_003640756.1
Xenopus tropicalis (tropical clawed frog)	hoxa11	XP_004915452.1
Homo sapiens (human)	HOXA11	NP_005514.1
	LOC704713	XP_001093087.2
Canis lupus familiaris (dog)	HOXA11	XP_003431971.2
Mus musculus (house mouse)	Hoxa11	NP_034580.1
Rattus norvegicus (Norway rat)	Hoxa11	NP_001123350.1
Gallus gallus (chicken)	HOXA11	NP_989950.1
Bos taurus (cattle)	HOXA11	XP_002686900.1
Rattus norvegicus (Norway rat)	LOC100909443	XP_003749800.1
Danio rerio (zebrafish)	hoxa11b	NP_571222.1

Gene Ontology
Bibliography

Related articles in PubMed

Evolution of Hoxa11 regulation in vertebrates is linked to the pentadactyl state.
Kherdjemil Y, Lalonde RL, Sheth R, Dumouchel A, de Martino G, Pineault KM, Wellik DM, Stadler HS, Akimenko MA, Kmita M
Nature539(7627)89-92(2016 11)

Phenotypic chemical screening using a zebrafish neural crest EMT reporter identifies retinoic acid as an inhibitor of epithelial morphogenesis.
Jimenez L, Wang J, Morrison MA, Whatcott C, Soh KK, Warner S, Bearss D, Jette CA, Stewart RA
Disease models & mechanisms9(4)389-400(2016 Apr)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following hoxa11b gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the hoxa11b cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa02562	NM_131147.1 Latest version!	Danio rerio homeobox A11b (hoxa11b), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$174.30 $249.00

ORF Online Only Promotion

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

hoxa11b ( NM_131147.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_571222.1 Danio rerio homeobox A11b (hoxa11b), mRNA.

Price & Availability↑

CloneID	ODa02562
Clone ID Related Accession (Same CDS sequence)	NM_131147.1
Accession Version	NM_131147.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 852bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-12-20
Organism	Danio rerio(zebrafish)
Product	homeobox protein Hox-A11b
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AF287137.1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BC162917.1, EH582303.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA3505370, SAMEA3505371 [ECO:0000348] ##Evidence-Data-END##

ATGATGGATT TTGATGAGCG GGTACCCGTT GGGTCCAACA TGTATTTGCC CGGCTGTACT 
TATTACGTGT CTGGAACGGA CTTTTCCAGC CTTCCTCCTT TTCTGCCCCA GACCCCGTCT 
TCTTGCCCCA TGACATACTC ATACTCCACG TCCAGTTTGC CACAAGTTCA GAGCGTAAGA 
GAGGTATCTT TCAGGGACTA TGCTATTGAC ACGTCCAGTA AGTGGCACTC CAGGGGGAAT 
CTGCCACACT GCTACGCGAC CGAAGACATG GTGCACAGGG AGTGCCTGTC CAATCCAGGG 
ACTTTGGGAG ACATGCTATC GAAAAATAAC TCGGTTCTCT ACCACTCCAA CTCGAGCCAC 
ACGTCCAACG TGTACGGCAG CGTGGGGAGG AACGGAGTGC TTCCTCAAGC CTTTGACCAG 
TTTTTCGAGA CAGCATACGG GAACGTGGAA AATCAGCCGA CTGAGCATCC GGTGGACAGA 
GCAACCAGCA AGGCGCCTCC ACCCGCAGAA TCGGGCAGCG ACAGTTGTCG GGGAACAGAT 
GAGACCGAGC GGTGTGAAGA GACAAGCAGC CCGGAGCCAT CTTCCGGCAA CAACGAAGAT 
AAATTCAGCG GCAGCAGCAA TGGACAAAAG ACACGGAAAA AAAGGTGCCC TTACACGAAA 
TATCAGATTA GAGAGCTGGA GAGAGAATTT TTCTTCAGTG TTTACATCAA CAAAGAAAAA 
AGGCTACAGC TTTCCAGAAT GCTCAACCTC ACTGACCGTC AGGTCAAAAT ATGGTTTCAA 
AACAGAAGGA TGAAAGAAAA AAAATTGAAT AGAGACCGTC TGCAGTATTA TACCACGAAC 
CCTTTGCTTT AG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_571222.1
CDS	1..852
Translation	MMDFDERVPVGSNMYLPGCTYYVSGTDFSSLPPFLPQTPSSCPMTYSYSTSSLPQVQSVREVSFRDYAIDTSSKWHSRGNLPHCYATEDMVHRECLSNPGTLGDMLSKNNSVLYHSNSSHTSNVYGSVGRNGVLPQAFDQFFETAYGNVENQPTEHPVDRATSKAPPPAESGSDSCRGTDETERCEETSSPEPSSGNNEDKFSGSSNGQKTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLNRDRLQYYTTNPLL

Target ORF information:

RefSeq Version	NM_131147.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio homeobox A11b (hoxa11b), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_131147.1

ORF Insert Sequence:

ATGATGGATT TTGATGAGCG GGTACCCGTT GGGTCCAACA TGTATTTGCC CGGCTGTACT 
TATTACGTGT CTGGAACGGA CTTTTCCAGC CTTCCTCCTT TTCTGCCCCA GACCCCGTCT 
TCTTGCCCCA TGACATACTC ATACTCCACG TCCAGTTTGC CACAAGTTCA GAGCGTAAGA 
GAGGTATCTT TCAGGGACTA TGCTATTGAC ACGTCCAGTA AGTGGCACTC CAGGGGGAAT 
CTGCCACACT GCTACGCGAC CGAAGACATG GTGCACAGGG AGTGCCTGTC CAATCCAGGG 
ACTTTGGGAG ACATGCTATC GAAAAATAAC TCGGTTCTCT ACCACTCCAA CTCGAGCCAC 
ACGTCCAACG TGTACGGCAG CGTGGGGAGG AACGGAGTGC TTCCTCAAGC CTTTGACCAG 
TTTTTCGAGA CAGCATACGG GAACGTGGAA AATCAGCCGA CTGAGCATCC GGTGGACAGA 
GCAACCAGCA AGGCGCCTCC ACCCGCAGAA TCGGGCAGCG ACAGTTGTCG GGGAACAGAT 
GAGACCGAGC GGTGTGAAGA GACAAGCAGC CCGGAGCCAT CTTCCGGCAA CAACGAAGAT 
AAATTCAGCG GCAGCAGCAA TGGACAAAAG ACACGGAAAA AAAGGTGCCC TTACACGAAA 
TATCAGATTA GAGAGCTGGA GAGAGAATTT TTCTTCAGTG TTTACATCAA CAAAGAAAAA 
AGGCTACAGC TTTCCAGAAT GCTCAACCTC ACTGACCGTC AGGTCAAAAT ATGGTTTCAA 
AACAGAAGGA TGAAAGAAAA AAAATTGAAT AGAGACCGTC TGCAGTATTA TACCACGAAC 
CCTTTGCTTT AG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Evolution of Hoxa11 regulation in vertebrates is linked to the pentadactyl state.
Nature539(7627)89-92(2016 11)
Kherdjemil Y,Lalonde RL,Sheth R,Dumouchel A,de Martino G,Pineault KM,Wellik DM,Stadler HS,Akimenko MA,Kmita M

Phenotypic chemical screening using a zebrafish neural crest EMT reporter identifies retinoic acid as an inhibitor of epithelial morphogenesis.
Disease models & mechanisms9(4)389-400(2016 Apr)
Jimenez L,Wang J,Morrison MA,Whatcott C,Soh KK,Warner S,Bearss D,Jette CA,Stewart RA