hacd1 cDNA ORF clone, Xenopus tropicalis(tropical clawed frog)

Gene
Clones
gRNAs

Summary

Gene Symbol	hacd1
Entrez Gene ID	100145048
Full Name	3-hydroxyacyl-CoA dehydratase 1
Synonyms	ptpla
General protein information	Preferred Names 3-hydroxyacyl-CoA dehydratase 1 Names very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A
Gene Type	protein-coding
Organism	Xenopus tropicalis(tropical clawed frog)

mRNA and Protein(s)

mRNA	Protein	Name
XM_002939003.5	XP_002939049.2	very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1
XM_002939003.4	XP_002939049.2	very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1

Pathways from BioSystems

Homologies

Canis lupus familiaris (dog)	PTPLA	NP_001020440.1
Gallus gallus (chicken)	PTPLA	XP_418620.2
Danio rerio (zebrafish)	LOC553326	XP_699783.2
Homo sapiens (human)	PTPLA	NP_055056.3
Mus musculus (house mouse)	Ptpla	NP_038963.3
Rattus norvegicus (Norway rat)	Ptpla	NP_001094471.1
Anopheles gambiae (African malaria mosquito)	AgaP_AGAP003815	XP_310376.5
Pan troglodytes (chimpanzee)	PTPLA	XP_003312513.1
Bos taurus (cattle)	PTPLA	XP_002692150.1
Saccharomyces cerevisiae (baker's yeast)	PHS1	NP_012438.1
Schizosaccharomyces pombe (fission yeast)	SPBC19C2.15c	NP_595700.1
Magnaporthe oryzae (rice blast fungus)	MGG_07602	XP_003711520.1
Xenopus tropicalis (tropical clawed frog)	ptpla	XP_002939049.2
	PTPLA	XP_001091308.1
Kluyveromyces lactis	KLLA0F14146g	XP_455715.1
Oryza sativa (rice)	Os01g0150800	NP_001042035.1
Oryza sativa (rice)	Os01g0150500	NP_001042034.2

Gene Ontology

The following hacd1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the hacd1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)
OXa12015	XM_002939003.5 Latest version!	Xenopus tropicalis 3-hydroxyacyl-CoA dehydratase 1 (hacd1), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$139.30 $199.00
View Old Accession Versions >>
OXa12015	XM_002939003.4	Xenopus tropicalis 3-hydroxyacyl-CoA dehydratase 1 (hacd1), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$174.30 $249.00
Hide Old Accession Versions >>

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

hacd1 ( XM_002939003.4 ) cDNA ORF clone, Xenopus tropicalis(tropical clawed frog) -> XP_002939049.2 Xenopus tropicalis 3-hydroxyacyl-CoA dehydratase 1 (hacd1), mRNA.

Price & Availability↑

CloneID	OXa12015
Clone ID Related Accession (Same CDS sequence)	XM_002939003.5 , XM_002939003.4
Accession Version	XM_002939003.4	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 723bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-09-07
Organism	Xenopus tropicalis(tropical clawed frog)
Product	very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030682.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 8, 2016 this sequence version replaced XM_002939003.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Xenopus tropicalis Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGCATCAA GCGATGATGA AGGTTCTGTG GAAGAGAAGG AACATACCAA GAAAAAGATC 
GGTCCTTTGG CCACAGCATG GCTCACCTTT TACAACATTG CCATGACAGC TGGATGGCTT 
GTTCTTGCCA TAGCCATGAT CCGATTTTAT GCGGAAAAAG GAACACACAA GGGTCTGTAT 
AGAAATATAC AGAAGACACT TAAATTTTTC CAGACATTTG CTTTACTTGA GCTGGTCCAC 
TGTGCACTGG GAATAGTGCA CACATCGGTG CTAGTAACAG GGGTCCAAGT CAGTTCAAGG 
ATCTTCATGG TCTGGTTTAT TACAAGCAGT ATAAAACAGG TCCAGAGTGA ACACGGCGTT 
CTTATTTTTC TTGTCGTATG GACTGTGACA GAGATCACGC GATATTCCTA CTACACATTC 
AAACTTCTCA ACCACTTGCC ATACTTCATT AAATGGGCCA GGTATAATTT ATTTATTGTT 
TTGTATCCTG TTGGCGTTGT GGGGGAACTG CTAACTATTT ATGCTGCTCT GCCCCACGTG 
CGGAAGAGTG CAATGTATTC TCTGAGACTT CCCAACAAGT ACAACGTCTC TTTCGACTAC 
TACTACTTCC TGATCATCGC AATGTGTTCT TATATACCAC TGTTTCCCCA ACTGTACTTC 
CACATGCTGC GCCAGAGGAG GAGAGTTCTG CACGGAGAAG TCATCGTGGA AAAGGACGAC 
TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_002939049.2
CDS	84..806
Translation	MASSDDEGSVEEKEHTKKKIGPLATAWLTFYNIAMTAGWLVLAIAMIRFYAEKGTHKGLYRNIQKTLKFFQTFALLELVHCALGIVHTSVLVTGVQVSSRIFMVWFITSSIKQVQSEHGVLIFLVVWTVTEITRYSYYTFKLLNHLPYFIKWARYNLFIVLYPVGVVGELLTIYAALPHVRKSAMYSLRLPNKYNVSFDYYYFLIIAMCSYIPLFPQLYFHMLRQRRRVLHGEVIVEKDD

Target ORF information:

RefSeq Version	XM_002939003.4
Organism	Xenopus tropicalis(tropical clawed frog)
Definition	Xenopus tropicalis 3-hydroxyacyl-CoA dehydratase 1 (hacd1), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_002939003.4

ORF Insert Sequence:

ATGGCATCAA GCGATGATGA AGGTTCTGTG GAAGAGAAGG AACATACCAA GAAAAAGATC 
GGTCCTTTGG CCACAGCATG GCTCACCTTT TACAACATTG CCATGACAGC TGGATGGCTT 
GTTCTTGCCA TAGCCATGAT CCGATTTTAT GCGGAAAAAG GAACACACAA GGGTCTGTAT 
AGAAATATAC AGAAGACACT TAAATTTTTC CAGACATTTG CTTTACTTGA GCTGGTCCAC 
TGTGCACTGG GAATAGTGCA CACATCGGTG CTAGTAACAG GGGTCCAAGT CAGTTCAAGG 
ATCTTCATGG TCTGGTTTAT TACAAGCAGT ATAAAACAGG TCCAGAGTGA ACACGGCGTT 
CTTATTTTTC TTGTCGTATG GACTGTGACA GAGATCACGC GATATTCCTA CTACACATTC 
AAACTTCTCA ACCACTTGCC ATACTTCATT AAATGGGCCA GGTATAATTT ATTTATTGTT 
TTGTATCCTG TTGGCGTTGT GGGGGAACTG CTAACTATTT ATGCTGCTCT GCCCCACGTG 
CGGAAGAGTG CAATGTATTC TCTGAGACTT CCCAACAAGT ACAACGTCTC TTTCGACTAC 
TACTACTTCC TGATCATCGC AATGTGTTCT TATATACCAC TGTTTCCCCA ACTGTACTTC 
CACATGCTGC GCCAGAGGAG GAGAGTTCTG CACGGAGAAG TCATCGTGGA AAAGGACGAC 
TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

hacd1 ( XM_002939003.5 ) cDNA ORF clone, Xenopus tropicalis(tropical clawed frog) -> XP_002939049.2 Xenopus tropicalis 3-hydroxyacyl-CoA dehydratase 1 (hacd1), mRNA.

Price & Availability↑

CloneID	OXa12015
Clone ID Related Accession (Same CDS sequence)	XM_002939003.5 , XM_002939003.4
Accession Version	XM_002939003.5 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 723bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-12-17
Organism	Xenopus tropicalis(tropical clawed frog)
Product	very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030682.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Dec 18, 2019 this sequence version replaced XM_002939003.4. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Xenopus tropicalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGCATCAA GCGATGATGA AGGTTCTGTG GAAGAGAAGG AACATACCAA GAAAAAGATC 
GGTCCTTTGG CCACAGCATG GCTCACCTTT TACAACATTG CCATGACAGC TGGATGGCTT 
GTTCTTGCCA TAGCCATGAT CCGATTTTAT GCGGAAAAAG GAACACACAA GGGTCTGTAT 
AGAAATATAC AGAAGACACT TAAATTTTTC CAGACATTTG CTTTACTTGA GCTGGTCCAC 
TGTGCACTGG GAATAGTGCA CACATCGGTG CTAGTAACAG GGGTCCAAGT CAGTTCAAGG 
ATCTTCATGG TCTGGTTTAT TACAAGCAGT ATAAAACAGG TCCAGAGTGA ACACGGCGTT 
CTTATTTTTC TTGTCGTATG GACTGTGACA GAGATCACGC GATATTCCTA CTACACATTC 
AAACTTCTCA ACCACTTGCC ATACTTCATT AAATGGGCCA GGTATAATTT ATTTATTGTT 
TTGTATCCTG TTGGCGTTGT GGGGGAACTG CTAACTATTT ATGCTGCTCT GCCCCACGTG 
CGGAAGAGTG CAATGTATTC TCTGAGACTT CCCAACAAGT ACAACGTCTC TTTCGACTAC 
TACTACTTCC TGATCATCGC AATGTGTTCT TATATACCAC TGTTTCCCCA ACTGTACTTC 
CACATGCTGC GCCAGAGGAG GAGAGTTCTG CACGGAGAAG TCATCGTGGA AAAGGACGAC 
TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_002939049.2
CDS	81..803
Translation	MASSDDEGSVEEKEHTKKKIGPLATAWLTFYNIAMTAGWLVLAIAMIRFYAEKGTHKGLYRNIQKTLKFFQTFALLELVHCALGIVHTSVLVTGVQVSSRIFMVWFITSSIKQVQSEHGVLIFLVVWTVTEITRYSYYTFKLLNHLPYFIKWARYNLFIVLYPVGVVGELLTIYAALPHVRKSAMYSLRLPNKYNVSFDYYYFLIIAMCSYIPLFPQLYFHMLRQRRRVLHGEVIVEKDD

Target ORF information:

RefSeq Version	XM_002939003.5
Organism	Xenopus tropicalis(tropical clawed frog)
Definition	Xenopus tropicalis 3-hydroxyacyl-CoA dehydratase 1 (hacd1), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_002939003.5

ORF Insert Sequence:

ATGGCATCAA GCGATGATGA AGGTTCTGTG GAAGAGAAGG AACATACCAA GAAAAAGATC 
GGTCCTTTGG CCACAGCATG GCTCACCTTT TACAACATTG CCATGACAGC TGGATGGCTT 
GTTCTTGCCA TAGCCATGAT CCGATTTTAT GCGGAAAAAG GAACACACAA GGGTCTGTAT 
AGAAATATAC AGAAGACACT TAAATTTTTC CAGACATTTG CTTTACTTGA GCTGGTCCAC 
TGTGCACTGG GAATAGTGCA CACATCGGTG CTAGTAACAG GGGTCCAAGT CAGTTCAAGG 
ATCTTCATGG TCTGGTTTAT TACAAGCAGT ATAAAACAGG TCCAGAGTGA ACACGGCGTT 
CTTATTTTTC TTGTCGTATG GACTGTGACA GAGATCACGC GATATTCCTA CTACACATTC 
AAACTTCTCA ACCACTTGCC ATACTTCATT AAATGGGCCA GGTATAATTT ATTTATTGTT 
TTGTATCCTG TTGGCGTTGT GGGGGAACTG CTAACTATTT ATGCTGCTCT GCCCCACGTG 
CGGAAGAGTG CAATGTATTC TCTGAGACTT CCCAACAAGT ACAACGTCTC TTTCGACTAC 
TACTACTTCC TGATCATCGC AATGTGTTCT TATATACCAC TGTTTCCCCA ACTGTACTTC 
CACATGCTGC GCCAGAGGAG GAGAGTTCTG CACGGAGAAG TCATCGTGGA AAAGGACGAC 
TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.