| Gene Symbol | MATR3 |
| Entrez Gene ID | 100232255 |
| Full Name | matrin 3 |
| Gene Type | protein-coding |
| Organism | Taeniopygia guttata(zebra finch) |
ORF » Species Summary » Taeniopygia guttata » MATR3 cDNA ORF clone
| Gene Symbol | MATR3 |
| Entrez Gene ID | 100232255 |
| Full Name | matrin 3 |
| Gene Type | protein-coding |
| Organism | Taeniopygia guttata(zebra finch) |
| mRNA | Protein | Name |
|---|---|---|
| XM_030283611.1 | XP_030139471.1 | matrin-3 isoform X1 |
| NM_001205256.1 | NP_001192185.1 | matrin-3 |
| XM_030283613.1 | XP_030139473.1 | matrin-3 isoform X2 |
| XM_012576048.1 | XP_012431502.1 | matrin-3 isoform X2 |
| XM_030283614.1 | XP_030139474.1 | matrin-3 isoform X2 |
| XM_012576044.1 | XP_012431498.1 | matrin-3 isoform X1 |
| XM_030283615.1 | XP_030139475.1 | matrin-3 isoform X3 |
| XM_030283616.1 | XP_030139476.1 | matrin-3 isoform X4 |
The Songbird Neurogenomics (SoNG) Initiative: community-based tools and strategies for study of brain gene function and evolution.
Replogle K, Arnold AP, Ball GF, Band M, Bensch S, Brenowitz EA, Dong S, Drnevich J, Ferris M, George JM, Gong G, Hasselquist D, Hernandez AG, Kim R, Lewin HA, Liu L, Lovell PV, Mello CV, Naurin S, Rodriguez-Zas S, Thimmapuram J, Wade J, Clayton DF
BMC genomics9131(2008 Mar)
Genomic resources for songbird research and their use in characterizing gene expression during brain development.
Li X, Wang XJ, Tannenhauser J, Podell S, Mukherjee P, Hertel M, Biane J, Masuda S, Nottebohm F, Gaasterland T
Proceedings of the National Academy of Sciences of the United States of America104(16)6834-9(2007 Apr)
A molecular neuroethological approach for identifying and characterizing a cascade of behaviorally regulated genes.
Wada K, Howard JT, McConnell P, Whitney O, Lints T, Rivas MV, Horita H, Patterson MA, White SA, Scharff C, Haesler S, Zhao S, Sakaguchi H, Hagiwara M, Shiraki T, Hirozane-Kishikawa T, Skene P, Hayashizaki Y, Carninci P, Jarvis ED
Proceedings of the National Academy of Sciences of the United States of America103(41)15212-7(2006 Oct)
A cDNA microarray from the telencephalon of juvenile male and female zebra finches.
Wade J, Peabody C, Coussens P, Tempelman RJ, Clayton DF, Liu L, Arnold AP, Agate R
Journal of neuroscience methods138(1-2)199-206(2004 Sep)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following MATR3 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the MATR3 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
| CloneID | OTd00104 | |
| Clone ID Related Accession (Same CDS sequence) | NM_001205256.1 | |
| Accession Version | NM_001205256.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 2712bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2019-09-10 | |
| Organism | Taeniopygia guttata(zebra finch) | |
| Product | matrin-3 | |
| Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from DV577246.2, CK306441.1, EE059084.1, DV948182.1, CK302355.1, CK315226.1, CK234974.1, DV577245.1, CK306825.1 and EE053029.1. On or before Apr 7, 2011 this sequence version replaced XM_002187095.1, XM_002187045.1. ##Evidence-Data-START## Transcript exon combination :: GGLD01048503.1, SRR8695295.12129.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00024301, SAMD00024302 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. | |
1 | ATGTCCAAGT CATTCCAGCA GTCATCTCTG AGTAGGGATT CACAAGGTCA TGGGCGTGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001192185.1 |
| CDS | 262..2973 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001205256.1 |
1 | ATGTCCAAGT CATTCCAGCA GTCATCTCTG AGTAGGGATT CACAAGGTCA TGGGCGTGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OTd20385 | |
| Clone ID Related Accession (Same CDS sequence) | XM_012576044.1 | |
| Accession Version | XM_012576044.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 2712bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2015-05-25 | |
| Organism | Taeniopygia guttata(zebra finch) | |
| Product | matrin-3 isoform X1 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_002197301.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Taeniopygia guttata Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGTCCAAGT CATTCCAGCA GTCATCTCTG AGTAGGGATT CACAAGGTCA TGGGCGTGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_012431498.1 |
| CDS | 198..2909 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_012576044.1 |
1 | ATGTCCAAGT CATTCCAGCA GTCATCTCTG AGTAGGGATT CACAAGGTCA TGGGCGTGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OTd20386 | |
| Clone ID Related Accession (Same CDS sequence) | XM_012576048.1 | |
| Accession Version | XM_012576048.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 2553bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2015-05-25 | |
| Organism | Taeniopygia guttata(zebra finch) | |
| Product | matrin-3 isoform X2 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_002197301.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Taeniopygia guttata Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGTCCAAGT CATTCCAGCA GTCATCTCTG AGTAGGGATT CACAAGGTCA TGGGCGTGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_012431502.1 |
| CDS | 198..2750 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_012576048.1 |
1 | ATGTCCAAGT CATTCCAGCA GTCATCTCTG AGTAGGGATT CACAAGGTCA TGGGCGTGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OTd28374 | |
| Clone ID Related Accession (Same CDS sequence) | XM_030283611.1 | |
| Accession Version | XM_030283611.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 2712bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2019-08-08 | |
| Organism | Taeniopygia guttata(zebra finch) | |
| Product | matrin-3 isoform X1 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_044225.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Taeniopygia guttata Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGTCCAAGT CATTCCAGCA GTCATCTCTG AGTAGGGATT CACAAGGTCA TGGGCGTGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_030139471.1 |
| CDS | 448..3159 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_030283611.1 |
1 | ATGTCCAAGT CATTCCAGCA GTCATCTCTG AGTAGGGATT CACAAGGTCA TGGGCGTGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OTd28375 | |
| Clone ID Related Accession (Same CDS sequence) | XM_030283613.1 , XM_030283614.1 | |
| Accession Version | XM_030283613.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 2553bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2019-08-08 | |
| Organism | Taeniopygia guttata(zebra finch) | |
| Product | matrin-3 isoform X2 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_044225.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Taeniopygia guttata Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGTCCAAGT CATTCCAGCA GTCATCTCTG AGTAGGGATT CACAAGGTCA TGGGCGTGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_030139473.1 |
| CDS | 449..3001 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_030283613.1 |
1 | ATGTCCAAGT CATTCCAGCA GTCATCTCTG AGTAGGGATT CACAAGGTCA TGGGCGTGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OTd28375 | |
| Clone ID Related Accession (Same CDS sequence) | XM_030283613.1 , XM_030283614.1 | |
| Accession Version | XM_030283614.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 2553bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2019-08-08 | |
| Organism | Taeniopygia guttata(zebra finch) | |
| Product | matrin-3 isoform X2 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_044225.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Taeniopygia guttata Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGTCCAAGT CATTCCAGCA GTCATCTCTG AGTAGGGATT CACAAGGTCA TGGGCGTGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_030139474.1 |
| CDS | 291..2843 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_030283614.1 |
1 | ATGTCCAAGT CATTCCAGCA GTCATCTCTG AGTAGGGATT CACAAGGTCA TGGGCGTGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OTd28376 | |
| Clone ID Related Accession (Same CDS sequence) | XM_030283615.1 | |
| Accession Version | XM_030283615.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1884bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2019-08-08 | |
| Organism | Taeniopygia guttata(zebra finch) | |
| Product | matrin-3 isoform X3 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_044225.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Taeniopygia guttata Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGAGCGGGG CGCGGGCGGC GGGCTGGCGG CGTGCGGTGC AACGGCGTTC TCGCGAGAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_030139475.1 |
| CDS | 279..2162 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_030283615.1 |
1 | ATGAGCGGGG CGCGGGCGGC GGGCTGGCGG CGTGCGGTGC AACGGCGTTC TCGCGAGAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OTd28377 | |
| Clone ID Related Accession (Same CDS sequence) | XM_030283616.1 | |
| Accession Version | XM_030283616.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1719bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2019-08-08 | |
| Organism | Taeniopygia guttata(zebra finch) | |
| Product | matrin-3 isoform X4 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_044225.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Taeniopygia guttata Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGGGTGATC CCTTTATGTT ACAGCAATCT ACAAACCCTG CACCGGGAAT TTTGGGACCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_030139476.1 |
| CDS | 277..1995 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_030283616.1 |
1 | ATGGGTGATC CCTTTATGTT ACAGCAATCT ACAAACCCTG CACCGGGAAT TTTGGGACCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
The Songbird Neurogenomics (SoNG) Initiative: community-based tools and strategies for study of brain gene function and evolution. |
Genomic resources for songbird research and their use in characterizing gene expression during brain development. |
A molecular neuroethological approach for identifying and characterizing a cascade of behaviorally regulated genes. |
A cDNA microarray from the telencephalon of juvenile male and female zebra finches. |