LOC100135977 cDNA ORF clone, Oncorhynchus mykiss(rainbow trout)

Gene
Clones
gRNAs

Summary

Gene Symbol	LOC100135977
Entrez Gene ID	100135977
Full Name	virus-induced CXC chemokine
Gene Type	protein-coding
Organism	Oncorhynchus mykiss(rainbow trout)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001124316.1	NP_001117788.1	virus-induced CXC chemokine precursor

Pathways from BioSystems
Gene Ontology
Bibliography

Related articles in PubMed

Survey of transcript expression in rainbow trout leukocytes reveals a major contribution of interferon-responsive genes in the early response to a rhabdovirus infection.
O'Farrell C, Vaghefi N, Cantonnet M, Buteau B, Boudinot P, Benmansour A
Journal of virology76(16)8040-9(2002 Aug)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following LOC100135977 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC100135977 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OOf01098	NM_001124316.1 Latest version!	Oncorhynchus mykiss virus-induced CXC chemokine (LOC100135977), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$104.30 $149.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

LOC100135977 ( NM_001124316.1 ) cDNA ORF clone, Oncorhynchus mykiss(rainbow trout) -> NP_001117788.1 Oncorhynchus mykiss virus-induced CXC chemokine (LOC100135977), mRNA.

Price & Availability↑

CloneID	OOf01098
Clone ID Related Accession (Same CDS sequence)	NM_001124316.1
Accession Version	NM_001124316.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 303bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-07-02
Organism	Oncorhynchus mykiss(rainbow trout)
Product	virus-induced CXC chemokine precursor
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AF396869.1. ##Evidence-Data-START## Transcript exon combination :: AF396869.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00041048, SAMD00041049 [ECO:0000348] ##Evidence-Data-END##

ATGACCAACA CGATGACATC AACGGTCCTC ATCAGCTTCC TGGCCTGTCT GCTCCTGGCC 
AATGTTGAAG GCCAGGTGGG TCATTCTAAA GCTCGGTGCC AGTGTCAGAA TGGACTGGTG 
AACCGTGTTA AACCTCTTCA CATTGAGAAG CTCGAGGTGT ACACCTCCAG CCACTCCTGC 
AGGAACATGG AGATCATTGT CACTCTGAAG AACGGAGAAG AAAAAAAGTG TCTGAATCCA 
GAGGCTCCAT TTGCCAAGAA AACCATTGAG AAAATAATGA AAAAACAAAG GAGTGTGCAG 
TAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001117788.1
CDS	55..357
Translation	MTNTMTSTVLISFLACLLLANVEGQVGHSKARCQCQNGLVNRVKPLHIEKLEVYTSSHSCRNMEIIVTLKNGEEKKCLNPEAPFAKKTIEKIMKKQRSVQ

Target ORF information:

RefSeq Version	NM_001124316.1
Organism	Oncorhynchus mykiss(rainbow trout)
Definition	Oncorhynchus mykiss virus-induced CXC chemokine (LOC100135977), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001124316.1

ORF Insert Sequence:

ATGACCAACA CGATGACATC AACGGTCCTC ATCAGCTTCC TGGCCTGTCT GCTCCTGGCC 
AATGTTGAAG GCCAGGTGGG TCATTCTAAA GCTCGGTGCC AGTGTCAGAA TGGACTGGTG 
AACCGTGTTA AACCTCTTCA CATTGAGAAG CTCGAGGTGT ACACCTCCAG CCACTCCTGC 
AGGAACATGG AGATCATTGT CACTCTGAAG AACGGAGAAG AAAAAAAGTG TCTGAATCCA 
GAGGCTCCAT TTGCCAAGAA AACCATTGAG AAAATAATGA AAAAACAAAG GAGTGTGCAG 
TAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Survey of transcript expression in rainbow trout leukocytes reveals a major contribution of interferon-responsive genes in the early response to a rhabdovirus infection.
Journal of virology76(16)8040-9(2002 Aug)
O'Farrell C,Vaghefi N,Cantonnet M,Buteau B,Boudinot P,Benmansour A