| Gene Symbol | ifng1 |
| Entrez Gene ID | 100305073 |
| Full Name | interferon gamma 2a |
| Synonyms | IFNG |
| Gene Type | protein-coding |
| Organism | Ictalurus punctatus(channel catfish) |
ORF » Species Summary » Ictalurus punctatus » ifng1 cDNA ORF clone
| Gene Symbol | ifng1 |
| Entrez Gene ID | 100305073 |
| Full Name | interferon gamma 2a |
| Synonyms | IFNG |
| Gene Type | protein-coding |
| Organism | Ictalurus punctatus(channel catfish) |
| mRNA | Protein | Name |
|---|---|---|
| XM_017493646.1 | XP_017349135.1 | interferon gamma 2a isoform X1 |
| NM_001200302.1 | NP_001187231.1 | interferon gamma 2a isoform 1 precursor |
| NM_001200334.1 | NP_001187263.1 | interferon gamma 2a isoform 2 precursor |
Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote.
Liu S, Zhang Y, Zhou Z, Waldbieser G, Sun F, Lu J, Zhang J, Jiang Y, Zhang H, Wang X, Rajendran KV, Khoo L, Kucuktas H, Peatman E, Liu Z
BMC genomics13595(2012 Nov)
Identification and expression analysis of interferon gamma genes in channel catfish.
Milev-Milovanovic I, Long S, Wilson M, Bengten E, Miller NW, Chinchar VG
Immunogenetics58(1)70-80(2006 Feb)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following ifng1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the ifng1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
| CloneID | OIc14984 | |
| Clone ID Related Accession (Same CDS sequence) | XM_017493646.1 , NM_001200334.1 | |
| Accession Version | NM_001200334.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 528bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2019-05-04 | |
| Organism | Ictalurus punctatus(channel catfish) | |
| Product | interferon gamma 2a isoform 2 precursor | |
| Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from DQ124251.1. On Feb 10, 2018 this sequence version replaced XM_017493646.1. ##Evidence-Data-START## Transcript exon combination :: DQ124251.1 [ECO:0000332] ##Evidence-Data-END## | |
1 | ATGACTCTGT TTTGGAGAAT ATGTTTTGTC TTTTTTGGAA TGATGGCGTA CTCTGAGGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001187263.1 |
| CDS | 153..680 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001200334.1 |
1 | ATGACTCTGT TTTGGAGAAT ATGTTTTGTC TTTTTTGGAA TGATGGCGTA CTCTGAGGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OIc39922 | |
| Clone ID Related Accession (Same CDS sequence) | NM_001200302.1 | |
| Accession Version | NM_001200302.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 537bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2019-05-04 | |
| Organism | Ictalurus punctatus(channel catfish) | |
| Product | interferon gamma 2a isoform 1 precursor | |
| Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from DQ124250.1. ##Evidence-Data-START## Transcript exon combination :: DQ124250.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00116755, SAMN00739092 [ECO:0000348] ##Evidence-Data-END## | |
1 | ATGACTCTGT TTTGGAGAAT ATGTTTTGTC TTTTTTGGAA TGATGGCGTA CTCTGAGGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001187231.1 |
| CDS | 153..689 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001200302.1 |
1 | ATGACTCTGT TTTGGAGAAT ATGTTTTGTC TTTTTTGGAA TGATGGCGTA CTCTGAGGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OIc14984 | |
| Clone ID Related Accession (Same CDS sequence) | XM_017493646.1 , NM_001200334.1 | |
| Accession Version | XM_017493646.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 528bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2016-07-05 | |
| Organism | Ictalurus punctatus(channel catfish) | |
| Product | interferon gamma 2a isoform X1 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030434.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Ictalurus punctatus Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGACTCTGT TTTGGAGAAT ATGTTTTGTC TTTTTTGGAA TGATGGCGTA CTCTGAGGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_017349135.1 |
| CDS | 153..680 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_017493646.1 |
1 | ATGACTCTGT TTTGGAGAAT ATGTTTTGTC TTTTTTGGAA TGATGGCGTA CTCTGAGGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. |
Identification and expression analysis of interferon gamma genes in channel catfish. |