ssr1 cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	ssr1
Entrez Gene ID	373100
Full Name	signal sequence receptor, alpha
Synonyms	cb758
General protein information	Preferred Names signal sequence receptor, alpha Names translocon-associated protein subunit alpha
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_201327.1	NP_958484.1	translocon-associated protein subunit alpha precursor

Pathways from BioSystems

Homologies

Canis lupus familiaris (dog)	SSR1	NP_001003270.1
Bos taurus (cattle)	SSR1	NP_001095592.1
Rattus norvegicus (Norway rat)	Ssr1	NP_001008891.2
Anopheles gambiae (African malaria mosquito)	AgaP_AGAP001721	XP_321364.3
Xenopus tropicalis (tropical clawed frog)	ssr1	NP_001016912.1
Pan troglodytes (chimpanzee)	SSR1	XP_003311142.1
Gallus gallus (chicken)	SSR1	NP_001006375.1
Drosophila melanogaster (fruit fly)	l(1)G0320	NP_572567.1
Caenorhabditis elegans (roundworm)	trap-1	NP_491076.1
Danio rerio (zebrafish)	ssr1	NP_958484.1
Homo sapiens (human)	SSR1	NP_003135.2
	SSR1	XP_001083953.1
Mus musculus (house mouse)	Ssr1	NP_080241.3

Gene Ontology
Bibliography

Related articles in PubMed

Investigation of the effects of estrogen on skeletal gene expression during zebrafish larval head development.
Pashay Ahi E, Walker BS, Lassiter CS, J?nsson ZO
PeerJ4e1878(2016)

Zebrafish whole-adult-organism chemogenomics for large-scale predictive and discovery chemical biology.
Lam SH, Mathavan S, Tong Y, Li H, Karuturi RK, Wu Y, Vega VB, Liu ET, Gong Z
PLoS genetics4(7)e1000121(2008 Jul)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following ssr1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the ssr1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa34782	NM_201327.1 Latest version!	Danio rerio signal sequence receptor, alpha (ssr1), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$174.30 $249.00

ORF Online Only Promotion

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

ssr1 ( NM_201327.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_958484.1 Danio rerio signal sequence receptor, alpha (ssr1), mRNA.

Price & Availability↑

CloneID	ODa34782
Clone ID Related Accession (Same CDS sequence)	NM_201327.1
Accession Version	NM_201327.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 873bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-12-09
Organism	Danio rerio(zebrafish)
Product	translocon-associated protein subunit alpha precursor
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC056339.1. ##Evidence-Data-START## Transcript exon combination :: BC056339.1 [ECO:0000332] ##Evidence-Data-END##

ATGAAACTGC TGCAGAAACT GCTGCTGCTG CTCCTGCTGG CGTTTCCCGC CACGCTGATG 
CTGAAGGGTC CTGTAGTGTC TGCTCAGGAC GCCACTGAGG AAGAGGAGGC TGTGGATGAA 
GATGCTGGTG ATGATGTGCT GGCGGAGGAT GAGGATGATG AAGCCGAGGT GGAGGACGAT 
GAGAACACTG AGCTGACGGA AGAGAAAGAG GAAGAGGAAG AAGAAGCTCT AGTGGGAGAG 
GTGAAGGCTT CACCCAACGC AGACACAACC ATCCTGTTCG TCAAAGGAGA AGATTTTCCA 
GCTAACAACA TCGTGAAGTT CCTGCTGGGC TTCAGCAATA AGGGCTCGGA GAACTTTGTG 
GTGGAGTCTC TGGACGCCTC GTTCCGTTAC CCGCAGGACT TCCAGTTCTA CATCCAGAAC 
TTCACGGCGC TGCAGCTGGG CACACTGGTC CCTCCACAGC GCCAGGCCAC CTTCGAGTAC 
TCCTTCATCC CCGCTGAGCC CATGGGCGGA CGACCCTTCG GCCTCGTCAT CAACCTCAAC 
TACAGGGACG ACAGTGGAAA CGTTTTCCAG GACGCCGTCT TCAACCAGAC TGTCACCATC 
ACAGAGAGAG AGGACGGCCT GGACGGAGAA ACGATCTTCA TGTACGTGTT CCTCTCGGGT 
CTCGGCCTGC TATTGGTCAT CGGTCTTCAT CAGCTGCTTG AATCACGCAA GAGGAGACGG 
CCTGCAGCTA AAGTGGAGAT GGGCACATCC AACCACAATG ATGTGGACAT GAGCTGGATC 
CCACAGGAAA CACTCAACCA GATCAATAAA GCGTCTCCCA GACGGTCTCC GCGTAAGAGG 
ACTCAGAAGC GCTCCGCCGG CTCAGACGAG TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_958484.1
CDS	71..943
Translation	MKLLQKLLLLLLLAFPATLMLKGPVVSAQDATEEEEAVDEDAGDDVLAEDEDDEAEVEDDENTELTEEKEEEEEEALVGEVKASPNADTTILFVKGEDFPANNIVKFLLGFSNKGSENFVVESLDASFRYPQDFQFYIQNFTALQLGTLVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYRDDSGNVFQDAVFNQTVTITEREDGLDGETIFMYVFLSGLGLLLVIGLHQLLESRKRRRPAAKVEMGTSNHNDVDMSWIPQETLNQINKASPRRSPRKRTQKRSAGSDE

Target ORF information:

RefSeq Version	NM_201327.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio signal sequence receptor, alpha (ssr1), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_201327.1

ORF Insert Sequence:

ATGAAACTGC TGCAGAAACT GCTGCTGCTG CTCCTGCTGG CGTTTCCCGC CACGCTGATG 
CTGAAGGGTC CTGTAGTGTC TGCTCAGGAC GCCACTGAGG AAGAGGAGGC TGTGGATGAA 
GATGCTGGTG ATGATGTGCT GGCGGAGGAT GAGGATGATG AAGCCGAGGT GGAGGACGAT 
GAGAACACTG AGCTGACGGA AGAGAAAGAG GAAGAGGAAG AAGAAGCTCT AGTGGGAGAG 
GTGAAGGCTT CACCCAACGC AGACACAACC ATCCTGTTCG TCAAAGGAGA AGATTTTCCA 
GCTAACAACA TCGTGAAGTT CCTGCTGGGC TTCAGCAATA AGGGCTCGGA GAACTTTGTG 
GTGGAGTCTC TGGACGCCTC GTTCCGTTAC CCGCAGGACT TCCAGTTCTA CATCCAGAAC 
TTCACGGCGC TGCAGCTGGG CACACTGGTC CCTCCACAGC GCCAGGCCAC CTTCGAGTAC 
TCCTTCATCC CCGCTGAGCC CATGGGCGGA CGACCCTTCG GCCTCGTCAT CAACCTCAAC 
TACAGGGACG ACAGTGGAAA CGTTTTCCAG GACGCCGTCT TCAACCAGAC TGTCACCATC 
ACAGAGAGAG AGGACGGCCT GGACGGAGAA ACGATCTTCA TGTACGTGTT CCTCTCGGGT 
CTCGGCCTGC TATTGGTCAT CGGTCTTCAT CAGCTGCTTG AATCACGCAA GAGGAGACGG 
CCTGCAGCTA AAGTGGAGAT GGGCACATCC AACCACAATG ATGTGGACAT GAGCTGGATC 
CCACAGGAAA CACTCAACCA GATCAATAAA GCGTCTCCCA GACGGTCTCC GCGTAAGAGG 
ACTCAGAAGC GCTCCGCCGG CTCAGACGAG TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Investigation of the effects of estrogen on skeletal gene expression during zebrafish larval head development.
PeerJ4e1878(2016)
Pashay Ahi E,Walker BS,Lassiter CS,J?nsson ZO

Zebrafish whole-adult-organism chemogenomics for large-scale predictive and discovery chemical biology.
PLoS genetics4(7)e1000121(2008 Jul)
Lam SH,Mathavan S,Tong Y,Li H,Karuturi RK,Wu Y,Vega VB,Liu ET,Gong Z