MMP13B cDNA ORF clone, Danio rerio(Zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	MMP13B
Entrez Gene ID	100006896
Full Name	matrix metallopeptidase 13b
Synonyms	fi36g12,wu:fi36g12
General protein information	Preferred Names matrix metallopeptidase 13b Names collagenase 3 matrix metallopeptidase 13b (collagenase 3) matrix metalloproteinase 13b
Gene Type	protein-coding
Organism	Danio rerio(Zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
XM_001345471.7	XP_001345507.1	collagenase 3
XM_001345471.6	XP_001345507.1	collagenase 3

Pathways from BioSystems

Homologies

Pan troglodytes (chimpanzee)	MMP13	XP_001154361.1
Danio rerio (zebrafish)	mmp13b	XP_001345507.1
Gallus gallus (chicken)	MMP13	XP_003640635.1
Xenopus tropicalis (tropical clawed frog)	LOC100490019	XP_002934971.1
Canis lupus familiaris (dog)	MMP13	XP_536598.3
Mus musculus (house mouse)	Mmp13	NP_032633.1
Homo sapiens (human)	MMP13	NP_002418.1
	MMP13	XP_001098996.1
Bos taurus (cattle)	MMP13	NP_776814.1
Rattus norvegicus (Norway rat)	Mmp13	NP_598214.1
Caenorhabditis elegans (roundworm)	CELE_C31B8.8	NP_503790.1

Gene Ontology

The following MMP13B gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the MMP13B cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)
ODa20695	XM_001345471.7 Latest version!	Danio rerio matrix metallopeptidase 13b (mmp13b), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$258.30 $369.00
View Old Accession Versions >>
ODa20695	XM_001345471.6	Danio rerio matrix metallopeptidase 13b (mmp13b), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$258.30 $369.00
Hide Old Accession Versions >>

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

MMP13B ( XM_001345471.7 ) cDNA ORF clone, Danio rerio(Zebrafish) -> XP_001345507.1 Danio rerio matrix metallopeptidase 13b (mmp13b), mRNA.

Price & Availability↑

CloneID	ODa20695
Clone ID Related Accession (Same CDS sequence)	XM_001345471.7 , XM_001345471.6
Accession Version	XM_001345471.7 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1386bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-06-14
Organism	Danio rerio(zebrafish)
Product	collagenase 3
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007126.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_001345471.6. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGAGCTTA AAACTGTTCT ACTATTGGTG ATCGCTGCAT ATAGTTCAGC AAAACCCATT 
TCAACTGAGG AGAAAGACAA AGCTGTGTTA GCTAAAAAAT ACCTTCAAAG GTTTTATGGC 
ATGCCGGCTG GTCTTCAGCG ACCGGGAAAG TCGTCTGATC TCATGCAGCA GAAGATCAGA 
GAGATGCAGG AGTTTTTTAA GCTGGAGGTG ACTGGAAAGC TGGATGACAA GACTGTGGAG 
CTAATGGAAA TGGCTCGCTG TGGAGTTCCA GATGTGGCTG AATATAATCA CTTTCCTCGA 
GATCTCAAAT GGAAAACCAC AAACGTGACC TTCAGGATTC TGAACTACAC TCCTGATCTG 
AAGAAGAAGG TTGTGGACAG AGCCGTAAGA AAAGCACTGA ACGTCTGGAG CAAAGTGACC 
CCGCTGAGAT TCACGAAAAC GTTTGATGGA ACTGCCGACA TCATGATCAG CTTTGGAACA 
AAAGAACATG GAGACTTCAA CCCGTTTGAT GGACCTGAAG GTCTTCTTGC TCATGCGTAT 
CCTCCTGGAA TCGGCATTGG TGGTGATACA CACTTTGACG AGGATGAAAC ATGGACTGAA 
GACTATCATG CGTTCAATCT GTTCCTGGTT GCGGCTCACG AGTTTGGTCA TGCTCTCGGT 
ATGGCTCATT CGTCAGACCC TGGATCTCTT ATGTACCCGG TTTACTCCTA CGCCAAAGGT 
TTCCCTCTCT CCGAGGACGA CATTGAGGGC ATCCAGTCTC TCTATGGTGA AAACCCAGAC 
CATGAAAAAT TCAAGCCTAA ACCGATTGCT CCAGAGAAAT GTGACCCTGA ACTGAGTTTC 
GATGCCATCA CTGAACTGCG TGGAGAGACT ATTATTTTTA AAGACAGGTT TTACTGGAGG 
CTGCATCCAA ATATGCCTGA ACCAGAACAA ACCCTCATTA AAAACACCTG GCCTGAAATA 
CCAAACAAAG TAGACGCTGC CTATGAGAAC CCAGAGAGAG ATGTGGTCAT CATATTCAGC 
GGTATCAAAA TGTGGGCTCT CAATGGCTAC ACTCTTGTTG ACGGCTACCC AAAATACATC 
CACAAACTTG GCCTCCCGAA AACGGTCCGC AAAATAGATG CTGCTGTCAA CATCCGAGAT 
ACGGGCAAGA CTCTTCTGTT TGTAGATGAA GAATACTGGA GTTTTGATGA GCAGACAGGC 
ACTATGGACA CTGGATACCC ACGATCCATT GAGGACGACT TTCCTGGAAT AGGAGATGAA 
GTGGACGCCG CTGCTTATCA TTACGGATAC TTGAACTTGT ATCATGAACA TACTCAGTTT 
GAGTACAGTT ACAGCGCAAG GAAAGTCGTT CGCATCATGA GGGCAAACTC CATACTCAAT 
TGCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_001345507.1
CDS	132..1517
Translation	MELKTVLLLVIAAYSSAKPISTEEKDKAVLAKKYLQRFYGMPAGLQRPGKSSDLMQQKIREMQEFFKLEVTGKLDDKTVELMEMARCGVPDVAEYNHFPRDLKWKTTNVTFRILNYTPDLKKKVVDRAVRKALNVWSKVTPLRFTKTFDGTADIMISFGTKEHGDFNPFDGPEGLLAHAYPPGIGIGGDTHFDEDETWTEDYHAFNLFLVAAHEFGHALGMAHSSDPGSLMYPVYSYAKGFPLSEDDIEGIQSLYGENPDHEKFKPKPIAPEKCDPELSFDAITELRGETIIFKDRFYWRLHPNMPEPEQTLIKNTWPEIPNKVDAAYENPERDVVIIFSGIKMWALNGYTLVDGYPKYIHKLGLPKTVRKIDAAVNIRDTGKTLLFVDEEYWSFDEQTGTMDTGYPRSIEDDFPGIGDEVDAAAYHYGYLNLYHEHTQFEYSYSARKVVRIMRANSILNC

Target ORF information:

RefSeq Version	XM_001345471.7
Organism	Danio rerio(zebrafish)
Definition	Danio rerio matrix metallopeptidase 13b (mmp13b), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_001345471.7

ORF Insert Sequence:

ATGGAGCTTA AAACTGTTCT ACTATTGGTG ATCGCTGCAT ATAGTTCAGC AAAACCCATT 
TCAACTGAGG AGAAAGACAA AGCTGTGTTA GCTAAAAAAT ACCTTCAAAG GTTTTATGGC 
ATGCCGGCTG GTCTTCAGCG ACCGGGAAAG TCGTCTGATC TCATGCAGCA GAAGATCAGA 
GAGATGCAGG AGTTTTTTAA GCTGGAGGTG ACTGGAAAGC TGGATGACAA GACTGTGGAG 
CTAATGGAAA TGGCTCGCTG TGGAGTTCCA GATGTGGCTG AATATAATCA CTTTCCTCGA 
GATCTCAAAT GGAAAACCAC AAACGTGACC TTCAGGATTC TGAACTACAC TCCTGATCTG 
AAGAAGAAGG TTGTGGACAG AGCCGTAAGA AAAGCACTGA ACGTCTGGAG CAAAGTGACC 
CCGCTGAGAT TCACGAAAAC GTTTGATGGA ACTGCCGACA TCATGATCAG CTTTGGAACA 
AAAGAACATG GAGACTTCAA CCCGTTTGAT GGACCTGAAG GTCTTCTTGC TCATGCGTAT 
CCTCCTGGAA TCGGCATTGG TGGTGATACA CACTTTGACG AGGATGAAAC ATGGACTGAA 
GACTATCATG CGTTCAATCT GTTCCTGGTT GCGGCTCACG AGTTTGGTCA TGCTCTCGGT 
ATGGCTCATT CGTCAGACCC TGGATCTCTT ATGTACCCGG TTTACTCCTA CGCCAAAGGT 
TTCCCTCTCT CCGAGGACGA CATTGAGGGC ATCCAGTCTC TCTATGGTGA AAACCCAGAC 
CATGAAAAAT TCAAGCCTAA ACCGATTGCT CCAGAGAAAT GTGACCCTGA ACTGAGTTTC 
GATGCCATCA CTGAACTGCG TGGAGAGACT ATTATTTTTA AAGACAGGTT TTACTGGAGG 
CTGCATCCAA ATATGCCTGA ACCAGAACAA ACCCTCATTA AAAACACCTG GCCTGAAATA 
CCAAACAAAG TAGACGCTGC CTATGAGAAC CCAGAGAGAG ATGTGGTCAT CATATTCAGC 
GGTATCAAAA TGTGGGCTCT CAATGGCTAC ACTCTTGTTG ACGGCTACCC AAAATACATC 
CACAAACTTG GCCTCCCGAA AACGGTCCGC AAAATAGATG CTGCTGTCAA CATCCGAGAT 
ACGGGCAAGA CTCTTCTGTT TGTAGATGAA GAATACTGGA GTTTTGATGA GCAGACAGGC 
ACTATGGACA CTGGATACCC ACGATCCATT GAGGACGACT TTCCTGGAAT AGGAGATGAA 
GTGGACGCCG CTGCTTATCA TTACGGATAC TTGAACTTGT ATCATGAACA TACTCAGTTT 
GAGTACAGTT ACAGCGCAAG GAAAGTCGTT CGCATCATGA GGGCAAACTC CATACTCAAT 
TGCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

MMP13B ( XM_001345471.6 ) cDNA ORF clone, Danio rerio(Zebrafish) -> XP_001345507.1 Danio rerio matrix metallopeptidase 13b (mmp13b), mRNA.

Price & Availability↑

CloneID	ODa20695
Clone ID Related Accession (Same CDS sequence)	XM_001345471.7 , XM_001345471.6
Accession Version	XM_001345471.6	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1386bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-06-23
Organism	Danio rerio(Zebrafish)
Product	collagenase 3
Comment	MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007126.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_001345471.5. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGAGCTTA AAACTGTTCT ACTATTGGTG ATCGCTGCAT ATAGTTCAGC AAAACCCATT 
TCAACTGAGG AGAAAGACAA AGCTGTGTTA GCTAAAAAAT ACCTTCAAAG GTTTTATGGC 
ATGCCGGCTG GTCTTCAGCG ACCGGGAAAG TCGTCTGATC TCATGCAGCA GAAGATCAGA 
GAGATGCAGG AGTTTTTTAA GCTGGAGGTG ACTGGAAAGC TGGATGACAA GACTGTGGAG 
CTAATGGAAA TGGCTCGCTG TGGAGTTCCA GATGTGGCTG AATATAATCA CTTTCCTCGA 
GATCTCAAAT GGAAAACCAC AAACGTGACC TTCAGGATTC TGAACTACAC TCCTGATCTG 
AAGAAGAAGG TTGTGGACAG AGCCGTAAGA AAAGCACTGA ACGTCTGGAG CAAAGTGACC 
CCGCTGAGAT TCACGAAAAC GTTTGATGGA ACTGCCGACA TCATGATCAG CTTTGGAACA 
AAAGAACATG GAGACTTCAA CCCGTTTGAT GGACCTGAAG GTCTTCTTGC TCATGCGTAT 
CCTCCTGGAA TCGGCATTGG TGGTGATACA CACTTTGACG AGGATGAAAC ATGGACTGAA 
GACTATCATG CGTTCAATCT GTTCCTGGTT GCGGCTCACG AGTTTGGTCA TGCTCTCGGT 
ATGGCTCATT CGTCAGACCC TGGATCTCTT ATGTACCCGG TTTACTCCTA CGCCAAAGGT 
TTCCCTCTCT CCGAGGACGA CATTGAGGGC ATCCAGTCTC TCTATGGTGA AAACCCAGAC 
CATGAAAAAT TCAAGCCTAA ACCGATTGCT CCAGAGAAAT GTGACCCTGA ACTGAGTTTC 
GATGCCATCA CTGAACTGCG TGGAGAGACT ATTATTTTTA AAGACAGGTT TTACTGGAGG 
CTGCATCCAA ATATGCCTGA ACCAGAACAA ACCCTCATTA AAAACACCTG GCCTGAAATA 
CCAAACAAAG TAGACGCTGC CTATGAGAAC CCAGAGAGAG ATGTGGTCAT CATATTCAGC 
GGTATCAAAA TGTGGGCTCT CAATGGCTAC ACTCTTGTTG ACGGCTACCC AAAATACATC 
CACAAACTTG GCCTCCCGAA AACGGTCCGC AAAATAGATG CTGCTGTCAA CATCCGAGAT 
ACGGGCAAGA CTCTTCTGTT TGTAGATGAA GAATACTGGA GTTTTGATGA GCAGACAGGC 
ACTATGGACA CTGGATACCC ACGATCCATT GAGGACGACT TTCCTGGAAT AGGAGATGAA 
GTGGACGCCG CTGCTTATCA TTACGGATAC TTGAACTTGT ATCATGAACA TACTCAGTTT 
GAGTACAGTT ACAGCGCAAG GAAAGTCGTT CGCATCATGA GGGCAAACTC CATACTCAAT 
TGCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_001345507.1
CDS	71..1456
Translation	MELKTVLLLVIAAYSSAKPISTEEKDKAVLAKKYLQRFYGMPAGLQRPGKSSDLMQQKIREMQEFFKLEVTGKLDDKTVELMEMARCGVPDVAEYNHFPRDLKWKTTNVTFRILNYTPDLKKKVVDRAVRKALNVWSKVTPLRFTKTFDGTADIMISFGTKEHGDFNPFDGPEGLLAHAYPPGIGIGGDTHFDEDETWTEDYHAFNLFLVAAHEFGHALGMAHSSDPGSLMYPVYSYAKGFPLSEDDIEGIQSLYGENPDHEKFKPKPIAPEKCDPELSFDAITELRGETIIFKDRFYWRLHPNMPEPEQTLIKNTWPEIPNKVDAAYENPERDVVIIFSGIKMWALNGYTLVDGYPKYIHKLGLPKTVRKIDAAVNIRDTGKTLLFVDEEYWSFDEQTGTMDTGYPRSIEDDFPGIGDEVDAAAYHYGYLNLYHEHTQFEYSYSARKVVRIMRANSILNC

Target ORF information:

RefSeq Version	XM_001345471.6
Organism	Danio rerio(Zebrafish)
Definition	Danio rerio matrix metallopeptidase 13b (mmp13b), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_001345471.6

ORF Insert Sequence:

ATGGAGCTTA AAACTGTTCT ACTATTGGTG ATCGCTGCAT ATAGTTCAGC AAAACCCATT 
TCAACTGAGG AGAAAGACAA AGCTGTGTTA GCTAAAAAAT ACCTTCAAAG GTTTTATGGC 
ATGCCGGCTG GTCTTCAGCG ACCGGGAAAG TCGTCTGATC TCATGCAGCA GAAGATCAGA 
GAGATGCAGG AGTTTTTTAA GCTGGAGGTG ACTGGAAAGC TGGATGACAA GACTGTGGAG 
CTAATGGAAA TGGCTCGCTG TGGAGTTCCA GATGTGGCTG AATATAATCA CTTTCCTCGA 
GATCTCAAAT GGAAAACCAC AAACGTGACC TTCAGGATTC TGAACTACAC TCCTGATCTG 
AAGAAGAAGG TTGTGGACAG AGCCGTAAGA AAAGCACTGA ACGTCTGGAG CAAAGTGACC 
CCGCTGAGAT TCACGAAAAC GTTTGATGGA ACTGCCGACA TCATGATCAG CTTTGGAACA 
AAAGAACATG GAGACTTCAA CCCGTTTGAT GGACCTGAAG GTCTTCTTGC TCATGCGTAT 
CCTCCTGGAA TCGGCATTGG TGGTGATACA CACTTTGACG AGGATGAAAC ATGGACTGAA 
GACTATCATG CGTTCAATCT GTTCCTGGTT GCGGCTCACG AGTTTGGTCA TGCTCTCGGT 
ATGGCTCATT CGTCAGACCC TGGATCTCTT ATGTACCCGG TTTACTCCTA CGCCAAAGGT 
TTCCCTCTCT CCGAGGACGA CATTGAGGGC ATCCAGTCTC TCTATGGTGA AAACCCAGAC 
CATGAAAAAT TCAAGCCTAA ACCGATTGCT CCAGAGAAAT GTGACCCTGA ACTGAGTTTC 
GATGCCATCA CTGAACTGCG TGGAGAGACT ATTATTTTTA AAGACAGGTT TTACTGGAGG 
CTGCATCCAA ATATGCCTGA ACCAGAACAA ACCCTCATTA AAAACACCTG GCCTGAAATA 
CCAAACAAAG TAGACGCTGC CTATGAGAAC CCAGAGAGAG ATGTGGTCAT CATATTCAGC 
GGTATCAAAA TGTGGGCTCT CAATGGCTAC ACTCTTGTTG ACGGCTACCC AAAATACATC 
CACAAACTTG GCCTCCCGAA AACGGTCCGC AAAATAGATG CTGCTGTCAA CATCCGAGAT 
ACGGGCAAGA CTCTTCTGTT TGTAGATGAA GAATACTGGA GTTTTGATGA GCAGACAGGC 
ACTATGGACA CTGGATACCC ACGATCCATT GAGGACGACT TTCCTGGAAT AGGAGATGAA 
GTGGACGCCG CTGCTTATCA TTACGGATAC TTGAACTTGT ATCATGAACA TACTCAGTTT 
GAGTACAGTT ACAGCGCAAG GAAAGTCGTT CGCATCATGA GGGCAAACTC CATACTCAAT 
TGCTGA