LOC101408521 cDNA ORF clone, Ceratotherium simum simum(southern white rhinoceros)

Gene
Clones
gRNAs

Summary

Gene Symbol	LOC101408521
Entrez Gene ID	101408521
Full Name	protocadherin alpha-5
Synonyms	PCDHA5
Gene Type	protein-coding
Organism	Ceratotherium simum simum(southern white rhinoceros)

mRNA and Protein(s)

mRNA	Protein	Name
XM_014794003.1	XP_014649489.1	protocadherin alpha-5

Pathways from BioSystems
Gene Ontology

The following LOC101408521 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC101408521 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OCe48380	XM_014794003.1 Latest version!	Ceratotherium simum simum protocadherin alpha-5 (LOC101408521), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	TBD	$426.30 $609.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

LOC101408521 ( XM_014794003.1 ) cDNA ORF clone, Ceratotherium simum simum(southern white rhinoceros) -> XP_014649489.1 Ceratotherium simum simum protocadherin alpha-5 (LOC101408521), mRNA.

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CloneID	OCe48380
Clone ID Related Accession (Same CDS sequence)	XM_014794003.1
Accession Version	XM_014794003.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2445bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2015-11-26
Organism	Ceratotherium simum simum(southern white rhinoceros)
Product	protocadherin alpha-5
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004454159.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Ceratotherium simum simum Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 3% of CDS bases ##RefSeq-Attributes-END##

ATGGTATATT CCCAGAGAAG AAGTCTGAAA TTCCGGCGCC TGATGCTGTC GCTTCTGCTC 
CTCACAGCCT GGGAGGCCGG GAGCGGCCAG GTCCACTACT TGGTCCGGGA GGAGACCAAA 
CACGGCACCT TCGTGGGCCG CATCGCGCAG GACCTGGGGC TGGAGCTGGC GGAGCTGGTG 
CCGCGCCTGT TCCGGGTGGC GTCCAAAGGC CGTAGGGACC TTCTGGAGGT AAATCTGCAG 
AATGGCATTC TGTTTGTGAA TTCTCGGATC GACCGCGAGG AGCTGTGCGG GAGGAGCGCG 
GAGTGCAGCA TCCACCTGGA AGTGATCGTG GACAGGCCGC TGCAGGTTTT CCATGTGGAG 
GTGGAGGTGA AAGACATTAA CGACAATCCG CCAAGGTTCT TCCGACAAGA GCAGAGATTA 
TTTATTTTAG AGTCAAGAAT AGCGGATTCC AGGTTTCCGC TAGAGGGCGC ATCAGATATG 
GATATAGGAA CAAACGCAGA ATTGAGATAC AAGTTAAATG CTAATGAATA TTTTGACTTG 
GATGTTAAAA CAAATGAAGA AGAGACAAAC TTATTAGAGC TGGTTTTGAA GAAACCAGTA 
GATAGAGAAG AAAAGCAAGA ACATCGTTTA TTATTGATTG CAATTGATGG AGGAAAACCT 
GAACTAACAG GTACAGTTCA GTTATTGATC AATGTATTGG ACGCGAATGA TAATGCCCCG 
GAATTTGACA AATCAATTTA TAATGTTCGA TTATTGGAAA ATGCACCAAA CGGGACATTA 
GTTATTAAAC TGAACGCCTC AGATGCAGAT GAGGGCAGTA ATAAGGAAAT AGTGTACCTC 
TTTAGTGATC TTGTTCTTGA CAACGTAAAA TCTAAATTTG CAATCAATTC TAATAATGGG 
GAAATAACAG TTCAGGGAGA ACTGGATTAC GAAGACTGTA ATTTATATGA AATTAATATT 
GATGCTGTAG ATAAAAGTCC ATTCCCACTA ACTGGACACT GCAAAGTAAT AGTGAAACTC 
CTGGATGAGA ATGATAATAC ACCAGAGATG GTCATAACCT CTCTATCTCT GCCTGTCCAA 
GAGGACGCTC CACTGGGCAC CGTCATCGCC TTAATCAGTC TGTCCGACCG CGACTCTGGT 
GTGAATGGGC AGGTGACCTG TACCCTGTCG CCCCACATTC CGTTCAAGCT AGTGTCCACC 
TTCAAGAATT ACTATTCTTT GGTGCTGGAC AGCGCCTTGG ATCGCGAGAA CAAGTCGAAC 
TATATATTGG TGGTGACCGC GCGGGATAGG GGCTCGCCTT CTCTGTGGGC CACCGCCAGC 
GTGTCCGTGG AAGTGGCCGA CGTGAACGAC AACGCACCGG CGTTCGCGCA GCCCGAGTAC 
ACCGTGTTCG TGAAGGAGAA CAACCCGCCC GGCTGCCACA TCTTCGCGGT GTCTGCGCGG 
GACGCGGACG CGCAGGAGAA CGCGCGCGTG TCCTACTCGC TGGTGGAGCG GCGGGTGGGC 
GAGCGCGCGC TGTCGAGCTA CGTGTCGGTG CACGCGGAGA GCGGCAAGGT GTACGCGCTG 
CAGCCGCTGG ACCACGAGGA GCTGGAGCTG CTGCAGTTCC AGGTGAGCGC GTGCGACGCG 
GGCGTGCCGC CTCTGGGCAG CAACGTGACG CTGCAGGTGT TCGTGCTGGA CGAGAACGAC 
AACGCGCCCG CGCTGCTGCC GCCTGGGGCG GGCGGCGGGG GCGGCGCGGT GAGCGAGCTG 
GTGGCGCGGT CGGTGGGCGC GGGCCACGTG GTGGCGAAGG TGCGCGCTGT GGACGCGGAC 
TCGGGCTACA ACGCGTGGCT GTCTTACGAG CTGCAGCCAG AAGCTAACGG CGAGCGCAGC 
CCGTTCCGCG TGGGGCTGTA CACGGGCGAG ATCAGCACAA CGCGCGCCCT GGACGAGGCG 
GACTTGCCGC GCCAGCGCCT GCTGGTGCTG GTGAAGGACC ACGGCGAGCC GGCGCTGACG 
GCCACGGCCA CCGTGCTGCT GTCGCTGGTG GAGAGCGGCC AGACACCGAA GGCTTCGTCT 
CGGGCGTCGG TGGGCGCCTT GAGCGCGGAG ACGGCTCTGG TGGACGTCAA TGTGTACCTG 
ATCATCGCCA TCTGCGCTGT GTCCAGCCTG TTGGTGCTCA CGCTGCTGCT GTACACCGCG 
CTGCGGTGCT CGGCTCCGCC CACCGAGGGC GCGTGCGGGC CGGGGAAGCC CACGCTGGTG 
TGTTCCAGCG CGGTGGAGAG CTGGTCTTAC TCGCAGCAGA GGCGGCAGAG AGTGTGTTCT 
GGGGAGGGGC CGCCCAAGAC CGACCTCATA GCCTTCAGTC CCAGTCTTCC TCAAGGTCCC 
ATCTCTGCAG ACAATCCGCA TGATGTCGCT GTCTACCATG AAGATACATC TAGGTATTGT 
TCCAAGTCCG TTCCTCTTAT TACTGCATCG TTCCGTGCTG AATGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_014649489.1
CDS	16..2460
Translation	MVYSQRRSLKFRRLMLSLLLLTAWEAGSGQVHYLVREETKHGTFVGRIAQDLGLELAELVPRLFRVASKGRRDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVEVEVKDINDNPPRFFRQEQRLFILESRIADSRFPLEGASDMDIGTNAELRYKLNANEYFDLDVKTNEEETNLLELVLKKPVDREEKQEHRLLLIAIDGGKPELTGTVQLLINVLDANDNAPEFDKSIYNVRLLENAPNGTLVIKLNASDADEGSNKEIVYLFSDLVLDNVKSKFAINSNNGEITVQGELDYEDCNLYEINIDAVDKSPFPLTGHCKVIVKLLDENDNTPEMVITSLSLPVQEDAPLGTVIALISLSDRDSGVNGQVTCTLSPHIPFKLVSTFKNYYSLVLDSALDRENKSNYILVVTARDRGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFAVSARDADAQENARVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSACDAGVPPLGSNVTLQVFVLDENDNAPALLPPGAGGGGGAVSELVARSVGAGHVVAKVRAVDADSGYNAWLSYELQPEANGERSPFRVGLYTGEISTTRALDEADLPRQRLLVLVKDHGEPALTATATVLLSLVESGQTPKASSRASVGALSAETALVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPPTEGACGPGKPTLVCSSAVESWSYSQQRRQRVCSGEGPPKTDLIAFSPSLPQGPISADNPHDVAVYHEDTSRYCSKSVPLITASFRAE

Target ORF information:

RefSeq Version	XM_014794003.1
Organism	Ceratotherium simum simum(southern white rhinoceros)
Definition	Ceratotherium simum simum protocadherin alpha-5 (LOC101408521), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_014794003.1

ORF Insert Sequence:

ATGGTATATT CCCAGAGAAG AAGTCTGAAA TTCCGGCGCC TGATGCTGTC GCTTCTGCTC 
CTCACAGCCT GGGAGGCCGG GAGCGGCCAG GTCCACTACT TGGTCCGGGA GGAGACCAAA 
CACGGCACCT TCGTGGGCCG CATCGCGCAG GACCTGGGGC TGGAGCTGGC GGAGCTGGTG 
CCGCGCCTGT TCCGGGTGGC GTCCAAAGGC CGTAGGGACC TTCTGGAGGT AAATCTGCAG 
AATGGCATTC TGTTTGTGAA TTCTCGGATC GACCGCGAGG AGCTGTGCGG GAGGAGCGCG 
GAGTGCAGCA TCCACCTGGA AGTGATCGTG GACAGGCCGC TGCAGGTTTT CCATGTGGAG 
GTGGAGGTGA AAGACATTAA CGACAATCCG CCAAGGTTCT TCCGACAAGA GCAGAGATTA 
TTTATTTTAG AGTCAAGAAT AGCGGATTCC AGGTTTCCGC TAGAGGGCGC ATCAGATATG 
GATATAGGAA CAAACGCAGA ATTGAGATAC AAGTTAAATG CTAATGAATA TTTTGACTTG 
GATGTTAAAA CAAATGAAGA AGAGACAAAC TTATTAGAGC TGGTTTTGAA GAAACCAGTA 
GATAGAGAAG AAAAGCAAGA ACATCGTTTA TTATTGATTG CAATTGATGG AGGAAAACCT 
GAACTAACAG GTACAGTTCA GTTATTGATC AATGTATTGG ACGCGAATGA TAATGCCCCG 
GAATTTGACA AATCAATTTA TAATGTTCGA TTATTGGAAA ATGCACCAAA CGGGACATTA 
GTTATTAAAC TGAACGCCTC AGATGCAGAT GAGGGCAGTA ATAAGGAAAT AGTGTACCTC 
TTTAGTGATC TTGTTCTTGA CAACGTAAAA TCTAAATTTG CAATCAATTC TAATAATGGG 
GAAATAACAG TTCAGGGAGA ACTGGATTAC GAAGACTGTA ATTTATATGA AATTAATATT 
GATGCTGTAG ATAAAAGTCC ATTCCCACTA ACTGGACACT GCAAAGTAAT AGTGAAACTC 
CTGGATGAGA ATGATAATAC ACCAGAGATG GTCATAACCT CTCTATCTCT GCCTGTCCAA 
GAGGACGCTC CACTGGGCAC CGTCATCGCC TTAATCAGTC TGTCCGACCG CGACTCTGGT 
GTGAATGGGC AGGTGACCTG TACCCTGTCG CCCCACATTC CGTTCAAGCT AGTGTCCACC 
TTCAAGAATT ACTATTCTTT GGTGCTGGAC AGCGCCTTGG ATCGCGAGAA CAAGTCGAAC 
TATATATTGG TGGTGACCGC GCGGGATAGG GGCTCGCCTT CTCTGTGGGC CACCGCCAGC 
GTGTCCGTGG AAGTGGCCGA CGTGAACGAC AACGCACCGG CGTTCGCGCA GCCCGAGTAC 
ACCGTGTTCG TGAAGGAGAA CAACCCGCCC GGCTGCCACA TCTTCGCGGT GTCTGCGCGG 
GACGCGGACG CGCAGGAGAA CGCGCGCGTG TCCTACTCGC TGGTGGAGCG GCGGGTGGGC 
GAGCGCGCGC TGTCGAGCTA CGTGTCGGTG CACGCGGAGA GCGGCAAGGT GTACGCGCTG 
CAGCCGCTGG ACCACGAGGA GCTGGAGCTG CTGCAGTTCC AGGTGAGCGC GTGCGACGCG 
GGCGTGCCGC CTCTGGGCAG CAACGTGACG CTGCAGGTGT TCGTGCTGGA CGAGAACGAC 
AACGCGCCCG CGCTGCTGCC GCCTGGGGCG GGCGGCGGGG GCGGCGCGGT GAGCGAGCTG 
GTGGCGCGGT CGGTGGGCGC GGGCCACGTG GTGGCGAAGG TGCGCGCTGT GGACGCGGAC 
TCGGGCTACA ACGCGTGGCT GTCTTACGAG CTGCAGCCAG AAGCTAACGG CGAGCGCAGC 
CCGTTCCGCG TGGGGCTGTA CACGGGCGAG ATCAGCACAA CGCGCGCCCT GGACGAGGCG 
GACTTGCCGC GCCAGCGCCT GCTGGTGCTG GTGAAGGACC ACGGCGAGCC GGCGCTGACG 
GCCACGGCCA CCGTGCTGCT GTCGCTGGTG GAGAGCGGCC AGACACCGAA GGCTTCGTCT 
CGGGCGTCGG TGGGCGCCTT GAGCGCGGAG ACGGCTCTGG TGGACGTCAA TGTGTACCTG 
ATCATCGCCA TCTGCGCTGT GTCCAGCCTG TTGGTGCTCA CGCTGCTGCT GTACACCGCG 
CTGCGGTGCT CGGCTCCGCC CACCGAGGGC GCGTGCGGGC CGGGGAAGCC CACGCTGGTG 
TGTTCCAGCG CGGTGGAGAG CTGGTCTTAC TCGCAGCAGA GGCGGCAGAG AGTGTGTTCT 
GGGGAGGGGC CGCCCAAGAC CGACCTCATA GCCTTCAGTC CCAGTCTTCC TCAAGGTCCC 
ATCTCTGCAG ACAATCCGCA TGATGTCGCT GTCTACCATG AAGATACATC TAGGTATTGT 
TCCAAGTCCG TTCCTCTTAT TACTGCATCG TTCCGTGCTG AATGA