RAT1 cDNA ORF clone, Candida albicans SC5314

Gene
Clones
gRNAs

Summary

Gene Symbol	RAT1
Entrez Gene ID	3635686
Full Name	ssRNA exonuclease
Synonyms	CaO19.4681
Gene Type	protein-coding
Organism	Candida albicans SC5314

mRNA and Protein(s)

mRNA	Protein	Name
XM_717657.2	XP_722750.2	ssRNA exonuclease

Pathways from BioSystems
Gene Ontology
Bibliography

Related articles in PubMed

Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure.
Muzzey D, Schwartz K, Weissman JS, Sherlock G
Genome biology14(9)R97(2013)

Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes.
van het Hoog M, Rast TJ, Martchenko M, Grindle S, Dignard D, Hogues H, Cuomo C, Berriman M, Scherer S, Magee BB, Whiteway M, Chibana H, Nantel A, Magee PT
Genome biology8(4)R52(2007)

The diploid genome sequence of Candida albicans.
Jones T, Federspiel NA, Chibana H, Dungan J, Kalman S, Magee BB, Newport G, Thorstenson YR, Agabian N, Magee PT, Davis RW, Scherer S
Proceedings of the National Academy of Sciences of the United States of America101(19)7329-34(2004 May)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following RAT1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the RAT1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OCg11147	XM_717657.2 Latest version!	Candida albicans SC5314 ssRNA exonuclease (RAT1), partial mRNA.	pcDNA3.1-C-(k)DYK or customized vector	TBD	$510.30 $729.00

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

RAT1 ( XM_717657.2 ) cDNA ORF clone, Candida albicans SC5314 -> XP_722750.2 Candida albicans SC5314 ssRNA exonuclease (RAT1), partial mRNA.

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CloneID	OCg11147
Clone ID Related Accession (Same CDS sequence)	XM_717657.2
Accession Version	XM_717657.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2907bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2018-04-03
Organism	Candida albicans SC5314
Product	ssRNA exonuclease
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032092). On Dec 8, 2016 this sequence version replaced XM_717657.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends.

ATGGGTGTCC CAGCTTTATT TAGATGGTTA TCTCGAAAAT ATCCAAAAAT TATTTCCCCA 
GTAGTAGAGG AAGAAGACCA TGAAATTGGT GGTGCCAAAT ATGAAAACCC CAACCCCAAT 
GGAGAAATTG ATAATTTGTA TTTAGATATG AATGGTATTG TTCATCCATG TTCTCATCCT 
GAACATAAAA AGCCACCAGA AACTGAAGAT GAAATGTTTT TAGATATTTT TAAATATACT 
GATAGAGTGC TCATGATGGC TAGGCCAAGA AAGGTTTTAA TGATTGCTGT TGATGGGGTC 
GCACCAAGAG CGAAAATGAA TCAACAAAGA GCAAGAAGAT TCCGTGCTGC TAAAGATGCA 
GAATTGAAAG CAAAACAACT CGAAATTGAA GTTCAAGAAA GAGAATTACG TGGTGAAATT 
ATTAATGATG CAATCAAGGG GAAAAAACAA TGGGATTCTA ATGCCATTAC TCCAGGAACT 
CCATTTATGG ATAGATTAGC AGAAGCTTTA AGATATTGGG TAGCTTATAA ATTAAGTTCT 
GATCCAGGTT GGGCTAATTT ACAAGTTATT ATTAGTGATG CAACTGTTCC TGGTGAAGGT 
GAACATAAAT TGATGAGTTT TATTCGACTG CAAAGATCCG ATCCCCAATA TGATCCAAAC 
ACCAAGCATT GTATCTATGG ATTGGATGCC GATTTGATTT TCTTAGGATT GGCAACTCAT 
GAACCCCATT TTAGAGTTTT AAGAGAAGAT GTTTTTGCCT CACAAGATAA AAAGTTTACT 
ATCAAAGATC AAATTGCCGA TGCAAATTCC AATGGTGATA CAGTAGCAAA AGAAGATAAA 
AAACCATTCT TATGGTTACA TGTCAACGTG TTGCGTGAAT ATCTTCAAGT TGAATTATTC 
ACTCCGAGAA TGTCTTTCCC GTTTGAATTA GAGCGTGCAA TTGATGATTG GGTATTTCTT 
TGTTTCTTTG CTGGTAACGA TTTCTTGCCT CATTTACCAA GTTTAGATGT TAGAGATAAT 
GGTATTGACA CTCTTGTACA ATGTTGGAAA AGAAGTTTGC CAATTTTAAA AGATTATGTT 
ACATGTGATG GGAAATTGAA TTTGAAAAGT GTTGAAGTTT TGATGTCTAA TTTGGCTTAT 
AAGGAAAGCG AGATATTTAA AAATAAACAT GCTGCAGAAC AAAGAAGAGA AGAAAACAAT 
AAGAGAAGGA AGTTGGCTCA AGAACAGGAA CGAGCTCTTA AGCGTGTTTA TCTGTCGCAA 
GTGTCAAAAG GGAAAGATAA AGCACCTCTA ACTGCCGATG TCAATATGCC ATTGATGGAT 
ACGCTGGGTC AAAATGTGGA AGGATACGCC AATTTAACAA ATAGTGATAT TGTTCAAAAT 
AGAGCTATTT TGACTAAAGC CAACTTGGCT AATAGTGATG CTGCAGCCGA ATTGAAAAAA 
TTGATCGATT CCAAAAAGAC TCAAGTCACT GTTGTTCAAG ATCAAATAGC TACCGATTCT 
TCTGCTAATT CAGAAACAAC TACTTCAGAA TCAGAATTGG AAGAAATTCA AAGCGACAAC 
TCTCTCAAAA GAAAATTGGA ACCTGAAGAA GACAAACAGA CACAAAGTGA TGATATTAAA 
TTATGGGAAC CAGGATACAA TAAACGTTAT TATGAAGCCA AATTTCACTG TCAATCTGAT 
GAAGAAATCG AACAAACAAA AAGAGATGTT GTAAGACATT ATGTTGAAGG GATTGCATGG 
GTAGCATTAT ATTATTATCA AGGATGTCCA TCTTGGAACT GGTATTTCCC CTATCATTAT 
GCTCCTTTTG CAGCAGATTT TACTAACCTA GAGGAGTTAT TCCCAGAAGG TGTAAAGTTT 
AAATTAGGTG AACCATTTAG ACCATTTGAA CAATTGATGT CTGTTTTACC AGCTGCTTCT 
GGACATACCT TACCTCAAGT TTTCCGTGAT TTGATGTCGA ATCCCGATAG TGAAATTATT 
GATTTTTATC CTGAAGAATT TGAAATTGAT ATGAATGGGA AGAAAATGAG TTGGCAAGGT 
ATACCGTTAT TGCCATTTAT TGATGAAAAA CGATTGTTAG ATGCGGTACA GAAAAAATAT 
GAATTGTTAA CTCCAGATGA AAAATCAAGA AATACTAATA AGGAAGCAGA ATTATTTATA 
TCTCCAGCAA ATAAGAATTT TTCCAAATTT TCAGAAAAAT TATATAAAGA AAATGAAAAT 
GAAGTGACTT TCAAATATGC AAAGAGTGGA CTTTCTGGAA AAATTTTTAA ATTGGGAACG 
TTCAATCCCG AAGGGGTGTT TAATTTTCCC TTGAATGAAG GTTATATGCC CAATGTCAAT 
AATAGTGACT ATTTCCAAGC TATTTATCAT TTCCCTAAAA CCAAGACGGG TAAATCAATG 
ATATTGAATG GACATATAGC ACCATTGCCC GCATTGACAA CTGCGGATAA GAATGATCTT 
CTATATCAAT TGGACAAGTT CAATAATAGA AGAAATGGTG GAAGATTTAA TTCTACTTTA 
GATAATAGTG ATTATATCAA CAAGGGTCCT GCTGGTAAAG AATTATACAA GACTTATTCT 
ATGAGAAGAG GTGGGTATAG ATCATATTTA CAGTACTTAA CTAACGGACA TCATCCTGAT 
CATCAACTGC AAAATAGTCA GTATTTGTCG TATGGTCAAC AAAAGCCATA TGGCGGACAA 
GGGTCATATA ATCAACAGGG TTATTATAAT CAACAAGGTC GTTATAATCA ACAGGGGAAT 
AACTACAATC AACAAGGTCG TTATAGTCAA CAAAGTCAAT ATAATCAATA TCGATCCAAC 
ACCCAAAGAT TCAACAACAA CCAAAACTAC AATCAATCAT CAAACAATTC AAGATCTGGT 
TATCTTCCTC CTAGACCACA ACGCTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_722750.2
CDS	1..2907
Translation	MGVPALFRWLSRKYPKIISPVVEEEDHEIGGAKYENPNPNGEIDNLYLDMNGIVHPCSHPEHKKPPETEDEMFLDIFKYTDRVLMMARPRKVLMIAVDGVAPRAKMNQQRARRFRAAKDAELKAKQLEIEVQERELRGEIINDAIKGKKQWDSNAITPGTPFMDRLAEALRYWVAYKLSSDPGWANLQVIISDATVPGEGEHKLMSFIRLQRSDPQYDPNTKHCIYGLDADLIFLGLATHEPHFRVLREDVFASQDKKFTIKDQIADANSNGDTVAKEDKKPFLWLHVNVLREYLQVELFTPRMSFPFELERAIDDWVFLCFFAGNDFLPHLPSLDVRDNGIDTLVQCWKRSLPILKDYVTCDGKLNLKSVEVLMSNLAYKESEIFKNKHAAEQRREENNKRRKLAQEQERALKRVYLSQVSKGKDKAPLTADVNMPLMDTLGQNVEGYANLTNSDIVQNRAILTKANLANSDAAAELKKLIDSKKTQVTVVQDQIATDSSANSETTTSESELEEIQSDNSLKRKLEPEEDKQTQSDDIKLWEPGYNKRYYEAKFHCQSDEEIEQTKRDVVRHYVEGIAWVALYYYQGCPSWNWYFPYHYAPFAADFTNLEELFPEGVKFKLGEPFRPFEQLMSVLPAASGHTLPQVFRDLMSNPDSEIIDFYPEEFEIDMNGKKMSWQGIPLLPFIDEKRLLDAVQKKYELLTPDEKSRNTNKEAELFISPANKNFSKFSEKLYKENENEVTFKYAKSGLSGKIFKLGTFNPEGVFNFPLNEGYMPNVNNSDYFQAIYHFPKTKTGKSMILNGHIAPLPALTTADKNDLLYQLDKFNNRRNGGRFNSTLDNSDYINKGPAGKELYKTYSMRRGGYRSYLQYLTNGHHPDHQLQNSQYLSYGQQKPYGGQGSYNQQGYYNQQGRYNQQGNNYNQQGRYSQQSQYNQYRSNTQRFNNNQNYNQSSNNSRSGYLPPRPQR

Target ORF information:

RefSeq Version	XM_717657.2
Organism	Candida albicans SC5314
Definition	Candida albicans SC5314 ssRNA exonuclease (RAT1), partial mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_717657.2

ORF Insert Sequence:

ATGGGTGTCC CAGCTTTATT TAGATGGTTA TCTCGAAAAT ATCCAAAAAT TATTTCCCCA 
GTAGTAGAGG AAGAAGACCA TGAAATTGGT GGTGCCAAAT ATGAAAACCC CAACCCCAAT 
GGAGAAATTG ATAATTTGTA TTTAGATATG AATGGTATTG TTCATCCATG TTCTCATCCT 
GAACATAAAA AGCCACCAGA AACTGAAGAT GAAATGTTTT TAGATATTTT TAAATATACT 
GATAGAGTGC TCATGATGGC TAGGCCAAGA AAGGTTTTAA TGATTGCTGT TGATGGGGTC 
GCACCAAGAG CGAAAATGAA TCAACAAAGA GCAAGAAGAT TCCGTGCTGC TAAAGATGCA 
GAATTGAAAG CAAAACAACT CGAAATTGAA GTTCAAGAAA GAGAATTACG TGGTGAAATT 
ATTAATGATG CAATCAAGGG GAAAAAACAA TGGGATTCTA ATGCCATTAC TCCAGGAACT 
CCATTTATGG ATAGATTAGC AGAAGCTTTA AGATATTGGG TAGCTTATAA ATTAAGTTCT 
GATCCAGGTT GGGCTAATTT ACAAGTTATT ATTAGTGATG CAACTGTTCC TGGTGAAGGT 
GAACATAAAT TGATGAGTTT TATTCGACTG CAAAGATCCG ATCCCCAATA TGATCCAAAC 
ACCAAGCATT GTATCTATGG ATTGGATGCC GATTTGATTT TCTTAGGATT GGCAACTCAT 
GAACCCCATT TTAGAGTTTT AAGAGAAGAT GTTTTTGCCT CACAAGATAA AAAGTTTACT 
ATCAAAGATC AAATTGCCGA TGCAAATTCC AATGGTGATA CAGTAGCAAA AGAAGATAAA 
AAACCATTCT TATGGTTACA TGTCAACGTG TTGCGTGAAT ATCTTCAAGT TGAATTATTC 
ACTCCGAGAA TGTCTTTCCC GTTTGAATTA GAGCGTGCAA TTGATGATTG GGTATTTCTT 
TGTTTCTTTG CTGGTAACGA TTTCTTGCCT CATTTACCAA GTTTAGATGT TAGAGATAAT 
GGTATTGACA CTCTTGTACA ATGTTGGAAA AGAAGTTTGC CAATTTTAAA AGATTATGTT 
ACATGTGATG GGAAATTGAA TTTGAAAAGT GTTGAAGTTT TGATGTCTAA TTTGGCTTAT 
AAGGAAAGCG AGATATTTAA AAATAAACAT GCTGCAGAAC AAAGAAGAGA AGAAAACAAT 
AAGAGAAGGA AGTTGGCTCA AGAACAGGAA CGAGCTCTTA AGCGTGTTTA TCTGTCGCAA 
GTGTCAAAAG GGAAAGATAA AGCACCTCTA ACTGCCGATG TCAATATGCC ATTGATGGAT 
ACGCTGGGTC AAAATGTGGA AGGATACGCC AATTTAACAA ATAGTGATAT TGTTCAAAAT 
AGAGCTATTT TGACTAAAGC CAACTTGGCT AATAGTGATG CTGCAGCCGA ATTGAAAAAA 
TTGATCGATT CCAAAAAGAC TCAAGTCACT GTTGTTCAAG ATCAAATAGC TACCGATTCT 
TCTGCTAATT CAGAAACAAC TACTTCAGAA TCAGAATTGG AAGAAATTCA AAGCGACAAC 
TCTCTCAAAA GAAAATTGGA ACCTGAAGAA GACAAACAGA CACAAAGTGA TGATATTAAA 
TTATGGGAAC CAGGATACAA TAAACGTTAT TATGAAGCCA AATTTCACTG TCAATCTGAT 
GAAGAAATCG AACAAACAAA AAGAGATGTT GTAAGACATT ATGTTGAAGG GATTGCATGG 
GTAGCATTAT ATTATTATCA AGGATGTCCA TCTTGGAACT GGTATTTCCC CTATCATTAT 
GCTCCTTTTG CAGCAGATTT TACTAACCTA GAGGAGTTAT TCCCAGAAGG TGTAAAGTTT 
AAATTAGGTG AACCATTTAG ACCATTTGAA CAATTGATGT CTGTTTTACC AGCTGCTTCT 
GGACATACCT TACCTCAAGT TTTCCGTGAT TTGATGTCGA ATCCCGATAG TGAAATTATT 
GATTTTTATC CTGAAGAATT TGAAATTGAT ATGAATGGGA AGAAAATGAG TTGGCAAGGT 
ATACCGTTAT TGCCATTTAT TGATGAAAAA CGATTGTTAG ATGCGGTACA GAAAAAATAT 
GAATTGTTAA CTCCAGATGA AAAATCAAGA AATACTAATA AGGAAGCAGA ATTATTTATA 
TCTCCAGCAA ATAAGAATTT TTCCAAATTT TCAGAAAAAT TATATAAAGA AAATGAAAAT 
GAAGTGACTT TCAAATATGC AAAGAGTGGA CTTTCTGGAA AAATTTTTAA ATTGGGAACG 
TTCAATCCCG AAGGGGTGTT TAATTTTCCC TTGAATGAAG GTTATATGCC CAATGTCAAT 
AATAGTGACT ATTTCCAAGC TATTTATCAT TTCCCTAAAA CCAAGACGGG TAAATCAATG 
ATATTGAATG GACATATAGC ACCATTGCCC GCATTGACAA CTGCGGATAA GAATGATCTT 
CTATATCAAT TGGACAAGTT CAATAATAGA AGAAATGGTG GAAGATTTAA TTCTACTTTA 
GATAATAGTG ATTATATCAA CAAGGGTCCT GCTGGTAAAG AATTATACAA GACTTATTCT 
ATGAGAAGAG GTGGGTATAG ATCATATTTA CAGTACTTAA CTAACGGACA TCATCCTGAT 
CATCAACTGC AAAATAGTCA GTATTTGTCG TATGGTCAAC AAAAGCCATA TGGCGGACAA 
GGGTCATATA ATCAACAGGG TTATTATAAT CAACAAGGTC GTTATAATCA ACAGGGGAAT 
AACTACAATC AACAAGGTCG TTATAGTCAA CAAAGTCAAT ATAATCAATA TCGATCCAAC 
ACCCAAAGAT TCAACAACAA CCAAAACTAC AATCAATCAT CAAACAATTC AAGATCTGGT 
TATCTTCCTC CTAGACCACA ACGCTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure.
Genome biology14(9)R97(2013)
Muzzey D,Schwartz K,Weissman JS,Sherlock G

Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes.
Genome biology8(4)R52(2007)
van het Hoog M,Rast TJ,Martchenko M,Grindle S,Dignard D,Hogues H,Cuomo C,Berriman M,Scherer S,Magee BB,Whiteway M,Chibana H,Nantel A,Magee PT

The diploid genome sequence of Candida albicans.
Proceedings of the National Academy of Sciences of the United States of America101(19)7329-34(2004 May)
Jones T,Federspiel NA,Chibana H,Dungan J,Kalman S,Magee BB,Newport G,Thorstenson YR,Agabian N,Magee PT,Davis RW,Scherer S

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RAT1 cDNA ORF clone, Candida albicans SC5314

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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