OPN1SW cDNA ORF clone, Bos taurus(cattle)

Gene
Clones
gRNAs

Summary

Gene Symbol	OPN1SW
Entrez Gene ID	282294
Full Name	opsin 1, short wave sensitive
Synonyms	BCP
General protein information	Preferred Names opsin 1, short wave sensitive Names short-wave-sensitive opsin 1 BOP blue cone photoreceptor pigment blue-sensitive opsin cone pigment opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan)
Gene Type	protein-coding
Organism	Bos taurus(cattle)

mRNA and Protein(s)

mRNA	Protein	Name
NM_174567.1	NP_776992.1	short-wave-sensitive opsin 1

Pathways from BioSystems

Homologies

Bos taurus (cattle)	OPN1SW	NP_776992.1
Mus musculus (house mouse)	Opn1sw	NP_031564.1
Homo sapiens (human)	OPN1SW	NP_001699.1
	OPN1SW	XP_001091869.1
Canis lupus familiaris (dog)	OPN1SW	XP_539386.2
Xenopus tropicalis (tropical clawed frog)	opn1sw	NP_001119548.1
Pan troglodytes (chimpanzee)	OPN1SW	NP_001009127.1
Rattus norvegicus (Norway rat)	Opn1sw	NP_112277.1
Danio rerio (zebrafish)	opn1sw1	NP_571394.1

Gene Ontology
Bibliography

Related articles in PubMed

A whole-genome assembly of the domestic cow, Bos taurus.
Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Mar?ais G, Roberts M, Subramanian P, Yorke JA, Salzberg SL
Genome biology10(4)R42(2009)

Blue cones and cone bipolar cells share transcriptional specificity as determined by expression of human blue visual pigment-derived transgenes.
Chiu MI, Nathans J
The Journal of neuroscience : the official journal of the Society for Neuroscience14(6)3426-36(1994 Jun)

Murine and bovine blue cone pigment genes: cloning and characterization of two new members of the S family of visual pigments.
Chiu MI, Zack DJ, Wang Y, Nathans J
Genomics21(2)440-3(1994 May)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following OPN1SW gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the OPN1SW cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OBa42475	NM_174567.1 Latest version!	Bos taurus opsin 1, short wave sensitive (OPN1SW), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$258.30 $369.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

OPN1SW ( NM_174567.1 ) cDNA ORF clone, Bos taurus(cattle) -> NP_776992.1 Bos taurus opsin 1, short wave sensitive (OPN1SW), mRNA.

Price & Availability↑

CloneID	OBa42475
Clone ID Related Accession (Same CDS sequence)	NM_174567.1
Accession Version	NM_174567.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1050bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-12-25
Organism	Bos taurus(cattle)
Product	short-wave-sensitive opsin 1
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from U92557.1. ##Evidence-Data-START## Transcript exon combination :: U92557.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMN03145425, SAMN03145431 [ECO:0000350] ##Evidence-Data-END##

ATGAGCAAGA TGTCAGAGGA GGAGGAGTTT CTTCTGTTCA AGAACATCTC CTTGGTGGGG 
CCGTGGGATG GACCTCAGTA CCACCTCGCG CCTGTCTGGG CCTTCCACCT CCAGGCAGTC 
TTCATGGGTT TTGTCTTCTT TGTAGGGACG CCACTCAATG CCACGGTGCT GGTGGCCACA 
CTGCGCTACA GAAAGTTGCG GCAGCCACTC AACTATATTC TGGTCAACGT GTCTCTGGGG 
GGCTTCATCT ACTGCATCTT CTCTGTCTTC ATCGTCTTCA TCACCAGTTG TTATGGGTAC 
TTCGTCTTCG GCCGCCATGT CTGTGCCCTG GAGGCCTTCC TGGGCTGTAC AGCAGGTCTG 
GTGACAGGCT GGTCACTGGC CTTCTTGGCC TTCGAGCGCT ACATCATCAT CTGTAAACCC 
TTCGGCAACT TCCGCTTCAG CTCCAAGCAT GCCCTGATGG TGGTCGTGGC CACCTGGACC 
ATCGGTATTG GTGTCTCCAT CCCACCCTTC TTTGGCTGGA GCCGATTCGT CCCTGAGGGC 
CTGCAGTGTT CCTGTGGTCC CGACTGGTAC ACCGTGGGCA CCAAGTATTA CAGCGAGTAC 
TATACCTGGT TCCTCTTCAT CTTCTGCTAC ATTGTGCCTC TCTCCCTCAT CTGCTTCTCC 
TACTCTCAGC TGCTGGGGGC CCTCAGAGCT GTTGCGGCTC AACAGCAGGA GTCAGCTTCG 
ACCCAGAAGG CTGAGCGGGA GGTGAGCCAC ATGGTGGTGG TCATGGTGGG ATCCTTTTGT 
CTCTGTTACA CACCCTACGC TGCCCTGGCC ATGTATATAG TCAACAACCG TAACCATGGG 
GTGGACTTAC GGCTTGTCAC CATTCCTGCC TTCTTCTCCA AGAGTGCTTG TGTCTACAAT 
CCCATCATCT ACTGCTTCAT GAATAAGCAG TTCCGAGCTT GCATCATGGA GATGGTGTGT 
GGAAAACCCA TGACAGATGA GTCTGAGCTG TCTAGCTCCC AGAAAACCGA AGTGTCTACT 
GTCTCTTCTA GCCAAGTTGG CCCCAACTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_776992.1
CDS	1..1050
Translation	MSKMSEEEEFLLFKNISLVGPWDGPQYHLAPVWAFHLQAVFMGFVFFVGTPLNATVLVATLRYRKLRQPLNYILVNVSLGGFIYCIFSVFIVFITSCYGYFVFGRHVCALEAFLGCTAGLVTGWSLAFLAFERYIIICKPFGNFRFSSKHALMVVVATWTIGIGVSIPPFFGWSRFVPEGLQCSCGPDWYTVGTKYYSEYYTWFLFIFCYIVPLSLICFSYSQLLGALRAVAAQQQESASTQKAEREVSHMVVVMVGSFCLCYTPYAALAMYIVNNRNHGVDLRLVTIPAFFSKSACVYNPIIYCFMNKQFRACIMEMVCGKPMTDESELSSSQKTEVSTVSSSQVGPN

Target ORF information:

RefSeq Version	NM_174567.1
Organism	Bos taurus(cattle)
Definition	Bos taurus opsin 1, short wave sensitive (OPN1SW), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_174567.1

ORF Insert Sequence:

ATGAGCAAGA TGTCAGAGGA GGAGGAGTTT CTTCTGTTCA AGAACATCTC CTTGGTGGGG 
CCGTGGGATG GACCTCAGTA CCACCTCGCG CCTGTCTGGG CCTTCCACCT CCAGGCAGTC 
TTCATGGGTT TTGTCTTCTT TGTAGGGACG CCACTCAATG CCACGGTGCT GGTGGCCACA 
CTGCGCTACA GAAAGTTGCG GCAGCCACTC AACTATATTC TGGTCAACGT GTCTCTGGGG 
GGCTTCATCT ACTGCATCTT CTCTGTCTTC ATCGTCTTCA TCACCAGTTG TTATGGGTAC 
TTCGTCTTCG GCCGCCATGT CTGTGCCCTG GAGGCCTTCC TGGGCTGTAC AGCAGGTCTG 
GTGACAGGCT GGTCACTGGC CTTCTTGGCC TTCGAGCGCT ACATCATCAT CTGTAAACCC 
TTCGGCAACT TCCGCTTCAG CTCCAAGCAT GCCCTGATGG TGGTCGTGGC CACCTGGACC 
ATCGGTATTG GTGTCTCCAT CCCACCCTTC TTTGGCTGGA GCCGATTCGT CCCTGAGGGC 
CTGCAGTGTT CCTGTGGTCC CGACTGGTAC ACCGTGGGCA CCAAGTATTA CAGCGAGTAC 
TATACCTGGT TCCTCTTCAT CTTCTGCTAC ATTGTGCCTC TCTCCCTCAT CTGCTTCTCC 
TACTCTCAGC TGCTGGGGGC CCTCAGAGCT GTTGCGGCTC AACAGCAGGA GTCAGCTTCG 
ACCCAGAAGG CTGAGCGGGA GGTGAGCCAC ATGGTGGTGG TCATGGTGGG ATCCTTTTGT 
CTCTGTTACA CACCCTACGC TGCCCTGGCC ATGTATATAG TCAACAACCG TAACCATGGG 
GTGGACTTAC GGCTTGTCAC CATTCCTGCC TTCTTCTCCA AGAGTGCTTG TGTCTACAAT 
CCCATCATCT ACTGCTTCAT GAATAAGCAG TTCCGAGCTT GCATCATGGA GATGGTGTGT 
GGAAAACCCA TGACAGATGA GTCTGAGCTG TCTAGCTCCC AGAAAACCGA AGTGTCTACT 
GTCTCTTCTA GCCAAGTTGG CCCCAACTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

A whole-genome assembly of the domestic cow, Bos taurus.
Genome biology10(4)R42(2009)
Zimin AV,Delcher AL,Florea L,Kelley DR,Schatz MC,Puiu D,Hanrahan F,Pertea G,Van Tassell CP,Sonstegard TS,Mar?ais G,Roberts M,Subramanian P,Yorke JA,Salzberg SL

Blue cones and cone bipolar cells share transcriptional specificity as determined by expression of human blue visual pigment-derived transgenes.
The Journal of neuroscience : the official journal of the Society for Neuroscience14(6)3426-36(1994 Jun)
Chiu MI,Nathans J

Murine and bovine blue cone pigment genes: cloning and characterization of two new members of the S family of visual pigments.
Genomics21(2)440-3(1994 May)
Chiu MI,Zack DJ,Wang Y,Nathans J