LOC108692928 cDNA ORF clone, Atta colombica

Gene
Clones
gRNAs

Summary

Gene Symbol	LOC108692928
Entrez Gene ID	108692928
Full Name	sphingomyelin phosphodiesterase 4
Gene Type	protein-coding
Organism	Atta colombica

mRNA and Protein(s)

mRNA	Protein	Name
XM_018201506.1	XP_018056995.1	sphingomyelin phosphodiesterase 4

Pathways from BioSystems
Gene Ontology

The following LOC108692928 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC108692928 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OAt91638	XM_018201506.1 Latest version!	Atta colombica sphingomyelin phosphodiesterase 4 (LOC108692928), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	14-16	$426.30 $609.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

LOC108692928 ( XM_018201506.1 ) cDNA ORF clone, Atta colombica -> XP_018056995.1 Atta colombica sphingomyelin phosphodiesterase 4 (LOC108692928), mRNA.

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CloneID	OAt91638
Clone ID Related Accession (Same CDS sequence)	XM_018201506.1
Accession Version	XM_018201506.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2010bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-09-18
Organism	Atta colombica
Product	sphingomyelin phosphodiesterase 4
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_017259576.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Atta colombica Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGTTTTCTT TGTGTTATAA ACTGCTTCCA GACTGTTATC TTAAGTATAA TTTTCCAGTG 
TCATATCTTC CGTACTATAT CTTTCATTTT GCGTATCATT TGACCAATCC TTGGTTACAA 
CTTCAACAGC AAGAAAATGT ATGGATGAAT TGGGAAACGG TTTATGTTCA ATTAGCGCAC 
TGTTATCTAT ACCATTTTCT TCCGAGAGAT AATTCTCCGG TTCTACCGGT GATTGGGCCA 
TATGTAAAGA AGACACCACC AAGAAAATTA ACTCAGTCAC CAGAATTCCG AAGAGATTGT 
CAAAAATTGC AAACTCTGAG ACTTCTAAGA GCATCTATAT TATCCTCGGG AACAACGAGT 
CCTGGAACAG GCATACCGCA ACAACAGCAG TGCTTACCAC AAGTCTGGAG AAGCGAGACT 
GTAGTACAAG TTTTTCTCGA TTTTTGGTTA GAATATACGG AGGATACGCA ATTGACCTCC 
CAATTGAGTA CATCCTACTT GTCTTCGATT CCGCGACGAC ATAGTATACA TTCTGGAGAA 
CACATACGTC TTGTAAGAGC GTTCATAAAA ACATTGCATG AGTTTACGAA TAGCACTACT 
GGCGACAAAA GCGCAATGGA TGAATTGAAA AGAATAATTC TTCCCTCGGT TCAAGGAAAA 
ATATATACGT TTTTGAGGAA AGCAATATAT CATTGGCCTC TAGACAGCTC GTTCAGGTTG 
ATACTGGAGG CTTGGTTAAG TTTTATTCAA CCATGGAGAT ATGTACCAGG AGTAACATAT 
ACCAAAGAAG GTAAAGCAGA GGAAGAAGAA AGAGGCAAAA TTCATGATCC TGGCAGATGG 
ATCTCTTTCG TTGTTAATAA TCTGTTAGCA TATACGGTTG TGTTTCAGCA ATTGCTTCCA 
CGATTTATGA GAACTGACCT AGTAGCGCCT AAGAATGCAT TAATGTTATT TAGAGTTACA 
AAAGTATTTT CACAACCATA CTTAGCAAAA ATGATATGTG AAGTAGAGAA TTGTGTGGAT 
GACGCAGGCC TTAGCAAAGG TCGAATAACT ACGAATCAAT GGACATCGAT TATTAGACAA 
CAAATTCTTG AACTAGAAGG TCCAACGTAT CAATATGTTC CCATGTTTTC GACAGCTATC 
AACCTGCAGG TCGTATGGTT TTTGAGTAAT ATTAAACAAG CGCATTTAAC ATCGACCAGT 
TTGGTGGAAG CTCTGGAAGA TAGAAGAAGA GGAAAGCGCT TTCTGCTTTC TCTGTGGGAA 
TTCTTTAGTT GCGAGGAATA CTCTTCGGAC GACATCAGCA TAGAAGAGCG ACGACGCGTT 
CCTGTATTGT TGGCCACTGC TCAACAGCAA CTAATAGATA TATTTCAAAT ACAACTCGAA 
GACATTCCAC AAGTTGCTAT AGTAGCGGAC CAAGAATATC ACGACAGTAT TCTGTCGACT 
TCTTTCTGTC ATCAATCACA GATGGAATCT AGCTTTGATT CAAGTAGACC GGGTACTTTC 
GTACCGTTGC AAGAGGGTAG ACAGACATGT CGATATATCG AATATATGGG CGATCCAGAA 
TTGCAACCGG TGCGAACGAA CGAATGCGCT TTTCTCGTTA GAAACTTTTA CAAGCTATGC 
TGTTACCTCA ATCTCAAGTA TCGATATGAG ATAATCGCAC TATACAACAG ACGAAGCTTC 
CTTGGTAGTG TTTGTCGACA ATTAATTGCC CCACCTACTA CGATTGTAAA ATTACCTAAA 
CGAACATCAA ACGGATTTAG CAGTGGCTCC GAGGAACGAC TGCCACCTCG ATTAAGTTTA 
CGACCTTTAG CTAATTACAG CTTTCTCATA AGTATATCAT TTGGTGTATT GATCGCATGG 
CTTATCAATT ATGGTCCTTT TATGTTCCTG GGATTTTTAT TTTTAATGTG GATTATGTAT 
GTAGTCATAC GTGCAACGTT GCAACACTAT TTTCCATCTA TCACAAGTGT TTTCAAACAA 
AACACGATTG CACCTTCCAT TAATCGATGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_018056995.1
CDS	73..2082
Translation	MFSLCYKLLPDCYLKYNFPVSYLPYYIFHFAYHLTNPWLQLQQQENVWMNWETVYVQLAHCYLYHFLPRDNSPVLPVIGPYVKKTPPRKLTQSPEFRRDCQKLQTLRLLRASILSSGTTSPGTGIPQQQQCLPQVWRSETVVQVFLDFWLEYTEDTQLTSQLSTSYLSSIPRRHSIHSGEHIRLVRAFIKTLHEFTNSTTGDKSAMDELKRIILPSVQGKIYTFLRKAIYHWPLDSSFRLILEAWLSFIQPWRYVPGVTYTKEGKAEEEERGKIHDPGRWISFVVNNLLAYTVVFQQLLPRFMRTDLVAPKNALMLFRVTKVFSQPYLAKMICEVENCVDDAGLSKGRITTNQWTSIIRQQILELEGPTYQYVPMFSTAINLQVVWFLSNIKQAHLTSTSLVEALEDRRRGKRFLLSLWEFFSCEEYSSDDISIEERRRVPVLLATAQQQLIDIFQIQLEDIPQVAIVADQEYHDSILSTSFCHQSQMESSFDSSRPGTFVPLQEGRQTCRYIEYMGDPELQPVRTNECAFLVRNFYKLCCYLNLKYRYEIIALYNRRSFLGSVCRQLIAPPTTIVKLPKRTSNGFSSGSEERLPPRLSLRPLANYSFLISISFGVLIAWLINYGPFMFLGFLFLMWIMYVVIRATLQHYFPSITSVFKQNTIAPSINR

Target ORF information:

RefSeq Version	XM_018201506.1
Organism	Atta colombica
Definition	Atta colombica sphingomyelin phosphodiesterase 4 (LOC108692928), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_018201506.1

ORF Insert Sequence:

ATGTTTTCTT TGTGTTATAA ACTGCTTCCA GACTGTTATC TTAAGTATAA TTTTCCAGTG 
TCATATCTTC CGTACTATAT CTTTCATTTT GCGTATCATT TGACCAATCC TTGGTTACAA 
CTTCAACAGC AAGAAAATGT ATGGATGAAT TGGGAAACGG TTTATGTTCA ATTAGCGCAC 
TGTTATCTAT ACCATTTTCT TCCGAGAGAT AATTCTCCGG TTCTACCGGT GATTGGGCCA 
TATGTAAAGA AGACACCACC AAGAAAATTA ACTCAGTCAC CAGAATTCCG AAGAGATTGT 
CAAAAATTGC AAACTCTGAG ACTTCTAAGA GCATCTATAT TATCCTCGGG AACAACGAGT 
CCTGGAACAG GCATACCGCA ACAACAGCAG TGCTTACCAC AAGTCTGGAG AAGCGAGACT 
GTAGTACAAG TTTTTCTCGA TTTTTGGTTA GAATATACGG AGGATACGCA ATTGACCTCC 
CAATTGAGTA CATCCTACTT GTCTTCGATT CCGCGACGAC ATAGTATACA TTCTGGAGAA 
CACATACGTC TTGTAAGAGC GTTCATAAAA ACATTGCATG AGTTTACGAA TAGCACTACT 
GGCGACAAAA GCGCAATGGA TGAATTGAAA AGAATAATTC TTCCCTCGGT TCAAGGAAAA 
ATATATACGT TTTTGAGGAA AGCAATATAT CATTGGCCTC TAGACAGCTC GTTCAGGTTG 
ATACTGGAGG CTTGGTTAAG TTTTATTCAA CCATGGAGAT ATGTACCAGG AGTAACATAT 
ACCAAAGAAG GTAAAGCAGA GGAAGAAGAA AGAGGCAAAA TTCATGATCC TGGCAGATGG 
ATCTCTTTCG TTGTTAATAA TCTGTTAGCA TATACGGTTG TGTTTCAGCA ATTGCTTCCA 
CGATTTATGA GAACTGACCT AGTAGCGCCT AAGAATGCAT TAATGTTATT TAGAGTTACA 
AAAGTATTTT CACAACCATA CTTAGCAAAA ATGATATGTG AAGTAGAGAA TTGTGTGGAT 
GACGCAGGCC TTAGCAAAGG TCGAATAACT ACGAATCAAT GGACATCGAT TATTAGACAA 
CAAATTCTTG AACTAGAAGG TCCAACGTAT CAATATGTTC CCATGTTTTC GACAGCTATC 
AACCTGCAGG TCGTATGGTT TTTGAGTAAT ATTAAACAAG CGCATTTAAC ATCGACCAGT 
TTGGTGGAAG CTCTGGAAGA TAGAAGAAGA GGAAAGCGCT TTCTGCTTTC TCTGTGGGAA 
TTCTTTAGTT GCGAGGAATA CTCTTCGGAC GACATCAGCA TAGAAGAGCG ACGACGCGTT 
CCTGTATTGT TGGCCACTGC TCAACAGCAA CTAATAGATA TATTTCAAAT ACAACTCGAA 
GACATTCCAC AAGTTGCTAT AGTAGCGGAC CAAGAATATC ACGACAGTAT TCTGTCGACT 
TCTTTCTGTC ATCAATCACA GATGGAATCT AGCTTTGATT CAAGTAGACC GGGTACTTTC 
GTACCGTTGC AAGAGGGTAG ACAGACATGT CGATATATCG AATATATGGG CGATCCAGAA 
TTGCAACCGG TGCGAACGAA CGAATGCGCT TTTCTCGTTA GAAACTTTTA CAAGCTATGC 
TGTTACCTCA ATCTCAAGTA TCGATATGAG ATAATCGCAC TATACAACAG ACGAAGCTTC 
CTTGGTAGTG TTTGTCGACA ATTAATTGCC CCACCTACTA CGATTGTAAA ATTACCTAAA 
CGAACATCAA ACGGATTTAG CAGTGGCTCC GAGGAACGAC TGCCACCTCG ATTAAGTTTA 
CGACCTTTAG CTAATTACAG CTTTCTCATA AGTATATCAT TTGGTGTATT GATCGCATGG 
CTTATCAATT ATGGTCCTTT TATGTTCCTG GGATTTTTAT TTTTAATGTG GATTATGTAT 
GTAGTCATAC GTGCAACGTT GCAACACTAT TTTCCATCTA TCACAAGTGT TTTCAAACAA 
AACACGATTG CACCTTCCAT TAATCGATGA