LOC108692509 cDNA ORF clone, Atta colombica

Gene
Clones
gRNAs

Summary

Gene Symbol	LOC108692509
Entrez Gene ID	108692509
Full Name	probable DNA mismatch repair protein Msh6
Gene Type	protein-coding
Organism	Atta colombica

mRNA and Protein(s)

mRNA	Protein	Name
XM_018200800.1	XP_018056289.1	probable DNA mismatch repair protein Msh6

Pathways from BioSystems
Gene Ontology

The following LOC108692509 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC108692509 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OAt91139	XM_018200800.1 Latest version!	Atta colombica probable DNA mismatch repair protein Msh6 (LOC108692509), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	19-21	$629.30 $899.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

LOC108692509 ( XM_018200800.1 ) cDNA ORF clone, Atta colombica -> XP_018056289.1 Atta colombica probable DNA mismatch repair protein Msh6 (LOC108692509), mRNA.

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CloneID	OAt91139
Clone ID Related Accession (Same CDS sequence)	XM_018200800.1
Accession Version	XM_018200800.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 3366bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-09-18
Organism	Atta colombica
Product	probable DNA mismatch repair protein Msh6
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_017259565.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Atta colombica Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGCCGAAAG TAAATACAAT ACTTAATTAT TTCACATCCC CGAAAACTAT CAAAAAGTTA 
GAAACGACAA AGGAAGAACG AGATAAGTCA CAAACTCCTA AGAGAGATCT AAAGAACAAA 
GGTTTGNNNN NNAATGGAAA AGAAAACCAG AATACTGATG ATAAGAAAAG ATCACATAAC 
AAGGACACTG AGAAAGAAGA TGAATCAATA AAGCCTAAAA GACGGCGTCT TATTATTCCT 
GATATTGATT CTGATGAAGA TTCTGGAGAT GAATTCAAAC CAGGTTCTGA ATCTGAAGAA 
TCTGAATCAG TTTCTGAAGG AGATACAGAG CAAGAACCTT CAACAGAGGA GGAAACACCA 
GAGAAAAAAA GAAAGACGTC CAGTGTTAAA TTCAAGTCGA AGCAAGCAAG TTTTCGTAAT 
ACAAAGGCAA ACAAAAAAGA TTTAAAACAA CCTTCGCAAC CAGTTCAAAG TCAAATTATA 
AGCAATGGAC TTAGCGCTGC ACACACTTGG CCTCATTTGA AATTAGATTT CTTGCATCCA 
GAGAAAATAA AAGACATACA TAGAAGAATG TTGAACGATC CAGATTATGA TCCTAAGACA 
CTCTACGTAC CCACTGAATT TTTAATTAAT CAAACTCCTG CGATGAGACA GTGGTGGGAA 
TTAAAAAGTA AGCACTTTGA TTGTGTATTT TTCTTTAAAA TCGGTAAATT TTATGAGTTG 
TATCATATGG ATGCAGTTAT TGGTGTTAAC GAGCTCAGTC TCACATATAT GCGGGGTGAA 
TTCGCGCATT CCGGATTTCC TGAAATTGGA TATGGTCGTT ATTCGGCGAG TCTAATAGAG 
AGAGGATATA AAGTCGCACG AGTTGAGCAA ACCGAGAATC CGGAAATGAT GACAGCGCGT 
TGTAGCAAAA TGACTAAACC GACAAAGTTC GATAAAGTGG TGAAACGTGA AATTTGTCAG 
GTCAGTACCA GGGGTACGAG AGTATATACG CCATTGGACG TGGAAACATC TACACCAAAC 
TCTAATTATC TATTATCCTT GATCGAAAAG TGTGATCTCA GTTCAACGAT CAGCTCCTTT 
GGAGTATGCT TTATAGATAC AACGATAGGT GAATTTTATC TCGGCCAATT CGTCGATGAT 
CGCTGCAACT CAAGACTGTT GACTCTGTTG GCTCACCATC CACCAATTCA TGTGATATAC 
GAACGCAGTA ATTTATCGCA AAAGACTTTG CAACTTATAA ATAACACTCT ACCGGCAGCA 
TTAAAAGAGT CGCTTCAGCG CGAGACACAA TTCTGGTCTG CTACTACTGT GCTGAAAAAA 
CTTCATGAAG GAAGTTACTT CAAAAAAGAA GACTCGAATT TTGCATGGCC TGAGGGTCTG 
AAACCGTATT TAAACGAAGG AGACAGCTTG GGTTTAACAC CGGCAGATAA CAAAGAATTA 
GCAGTACACG CACTTGGAGG ATGCGTGTGT TTGTTGAAGG AGTTCTTACT CGAACAGCAA 
TTATTAGCGC AAGGTTGCTT CAATACATAT ATTCCGCCGG ATTTTTCAAC CGCGAATAGC 
CGTACAGGTC TTAATTATGC AAACACCATG GTGATAGATG CCGTTACGAT AAAAAATCTA 
AGGCTTTTCG GAGAAGGTTC ACTCATTAAT GTATTGGATC ATTGCTGCAC TGCATTCGGC 
AAAAGATTGC TGCGCGAATG GGTTTGCAGA CCATCTTGTC GTAAAATCGT TATTATAGAG 
CGCCAAGAAG CTATACAAGA GTTGCTGGAT CGAATGGACG TAATGCAATC GGCTCGCATA 
ATTTTATCAA CTCTGCCAGA CCTCGAAAGA CTTTTGAGCA AGATACATGC TCAAGGAAAT 
GCTGCTAAAA TGAAAAATCA TCCAGAAGGT AGAGCCATAA TGTTTGAAGG TCCGACATAC 
TCGAAGAGGG TGATTGTAGA TTTCACTACG ACACTCGCCA AATTCGAAGA AGTGCTAAAA 
TTCATCGAAT TGTTTGAAGA TTTCAAAAGT AATCTGATAA CTCGCTACAC CAAGTACGAA 
CCGAACGGTG ATTTCCCTCG TTTAAGGGAG ACATTAGACT ATTTTAAGAC CGCATTCAAT 
CATGAAGAAG CTAAGAAACA AGGCTACATC GTTCCAAAAA AAGGAGTTGA CGCTGAATAT 
GATTCAGTTC TGACCGAGCT CGCAGATATC AAAAAAGATC TAGACAAATA CTTGGAAAAA 
CAAAAGCAAC ATTTTGGCGT AAAAGTAACG TTCCATGGAA CAGATAGGAA ACGTTATCAA 
ATTGAGATTC CCGAGTCGCA AGTTAAGAAA GTCGATCCTG GATACGAATT ACAGTCACAA 
AGGAAAGGTT TCAAACGTTA TTATACCGCC GAGGCAAAGG AACTTTTGAC AAGACAAATG 
AATGCCGAAG AGCATAAGGA CAAAGTGCTG AAAGATCTTA ACAGGCGAAT ATTCGCGCAG 
TTCAGTGAAA AATACGATAT GTGGCATGCG GCCGTTTACA AATTGGCCAC CATGGATGTG 
CTTATCTCCC TCGCGGATTA TGCGCGGAAC GGCGATGATA TGTGTATTCC GGAAATTCAC 
GATGGATCCG ATGGCGAGAT ATTCATCAAG ATAAAAGACG GACAACATCC CTGCATCGTA 
TCTGATAACT TTATACCGAA CAACACTTTA TTGGCAACCG ATGGCACCGC CTCTTTCATG 
ATTCTGACGG GACCGAATAT GGGAGGCAAA TCGACTCTTA TGCGCCAAAT GGGCCTGATC 
ACGATCATGG CGCAGATAGG CAGCTACGTT CCAGCTAGCT CGTGTTGCAT GACGCTGGTA 
GATCGTATTT TTACGCGGCT GGGCGCAAAC GACGATATTT TGGCCGGTCA GAGTACGTTT 
TTAGTTGAGC TGAGTGAAAC CGCTACAATA CTGCAACATG CTACACCCTA TTCGCTGGTA 
CTTCTCGATG AATTGGGACG TGGCACGTCA ACTTATGATG GTACGGCAAT AGCGGCTGCG 
GTCGTTGATG CATTGACCAA ACTCAAATGT CGCACATTAT TCTCGACGCA TTACCATTCT 
TTAGTTGAAG ATTATAAAAC TAACGAAGAA GTCACGTTAG CTCATATGGC ATGTATGGTG 
GAAACTGAAG AGGAAGAGGA AGTGTCGCAA GAGACCGTGA CGTTTTTGTA CAAGCTCAGC 
GAAGGGGCAT GTCCGAAATC CTACGGATTC AATGCCGCTC GACTGGCAGG CGTACCGTCT 
GTAATCACAA AGAGAGCTCA CGAGATAGCT AGCAGGATGG AGCAGGAAAC TAATCACAAG 
CACATCTTTA ATGCTCTTTG CAAAGCCAAT GGTGTCAGAA TGAGAAGTCT CATTGCTACC 
ATTTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_018056289.1
CDS	116..3481
Translation	MPKVNTILNYFTSPKTIKKLETTKEERDKSQTPKRDLKNKGLnullnullNGKENQNTDDKKRSHNKDTEKEDESIKPKRRRLIIPDIDSDEDSGDEFKPGSESEESESVSEGDTEQEPSTEEETPEKKRKTSSVKFKSKQASFRNTKANKKDLKQPSQPVQSQIISNGLSAAHTWPHLKLDFLHPEKIKDIHRRMLNDPDYDPKTLYVPTEFLINQTPAMRQWWELKSKHFDCVFFFKIGKFYELYHMDAVIGVNELSLTYMRGEFAHSGFPEIGYGRYSASLIERGYKVARVEQTENPEMMTARCSKMTKPTKFDKVVKREICQVSTRGTRVYTPLDVETSTPNSNYLLSLIEKCDLSSTISSFGVCFIDTTIGEFYLGQFVDDRCNSRLLTLLAHHPPIHVIYERSNLSQKTLQLINNTLPAALKESLQRETQFWSATTVLKKLHEGSYFKKEDSNFAWPEGLKPYLNEGDSLGLTPADNKELAVHALGGCVCLLKEFLLEQQLLAQGCFNTYIPPDFSTANSRTGLNYANTMVIDAVTIKNLRLFGEGSLINVLDHCCTAFGKRLLREWVCRPSCRKIVIIERQEAIQELLDRMDVMQSARIILSTLPDLERLLSKIHAQGNAAKMKNHPEGRAIMFEGPTYSKRVIVDFTTTLAKFEEVLKFIELFEDFKSNLITRYTKYEPNGDFPRLRETLDYFKTAFNHEEAKKQGYIVPKKGVDAEYDSVLTELADIKKDLDKYLEKQKQHFGVKVTFHGTDRKRYQIEIPESQVKKVDPGYELQSQRKGFKRYYTAEAKELLTRQMNAEEHKDKVLKDLNRRIFAQFSEKYDMWHAAVYKLATMDVLISLADYARNGDDMCIPEIHDGSDGEIFIKIKDGQHPCIVSDNFIPNNTLLATDGTASFMILTGPNMGGKSTLMRQMGLITIMAQIGSYVPASSCCMTLVDRIFTRLGANDDILAGQSTFLVELSETATILQHATPYSLVLLDELGRGTSTYDGTAIAAAVVDALTKLKCRTLFSTHYHSLVEDYKTNEEVTLAHMACMVETEEEEEVSQETVTFLYKLSEGACPKSYGFNAARLAGVPSVITKRAHEIASRMEQETNHKHIFNALCKANGVRMRSLIATI

Target ORF information:

RefSeq Version	XM_018200800.1
Organism	Atta colombica
Definition	Atta colombica probable DNA mismatch repair protein Msh6 (LOC108692509), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_018200800.1

ORF Insert Sequence:

ATGCCGAAAG TAAATACAAT ACTTAATTAT TTCACATCCC CGAAAACTAT CAAAAAGTTA 
GAAACGACAA AGGAAGAACG AGATAAGTCA CAAACTCCTA AGAGAGATCT AAAGAACAAA 
GGTTTGNNNN NNAATGGAAA AGAAAACCAG AATACTGATG ATAAGAAAAG ATCACATAAC 
AAGGACACTG AGAAAGAAGA TGAATCAATA AAGCCTAAAA GACGGCGTCT TATTATTCCT 
GATATTGATT CTGATGAAGA TTCTGGAGAT GAATTCAAAC CAGGTTCTGA ATCTGAAGAA 
TCTGAATCAG TTTCTGAAGG AGATACAGAG CAAGAACCTT CAACAGAGGA GGAAACACCA 
GAGAAAAAAA GAAAGACGTC CAGTGTTAAA TTCAAGTCGA AGCAAGCAAG TTTTCGTAAT 
ACAAAGGCAA ACAAAAAAGA TTTAAAACAA CCTTCGCAAC CAGTTCAAAG TCAAATTATA 
AGCAATGGAC TTAGCGCTGC ACACACTTGG CCTCATTTGA AATTAGATTT CTTGCATCCA 
GAGAAAATAA AAGACATACA TAGAAGAATG TTGAACGATC CAGATTATGA TCCTAAGACA 
CTCTACGTAC CCACTGAATT TTTAATTAAT CAAACTCCTG CGATGAGACA GTGGTGGGAA 
TTAAAAAGTA AGCACTTTGA TTGTGTATTT TTCTTTAAAA TCGGTAAATT TTATGAGTTG 
TATCATATGG ATGCAGTTAT TGGTGTTAAC GAGCTCAGTC TCACATATAT GCGGGGTGAA 
TTCGCGCATT CCGGATTTCC TGAAATTGGA TATGGTCGTT ATTCGGCGAG TCTAATAGAG 
AGAGGATATA AAGTCGCACG AGTTGAGCAA ACCGAGAATC CGGAAATGAT GACAGCGCGT 
TGTAGCAAAA TGACTAAACC GACAAAGTTC GATAAAGTGG TGAAACGTGA AATTTGTCAG 
GTCAGTACCA GGGGTACGAG AGTATATACG CCATTGGACG TGGAAACATC TACACCAAAC 
TCTAATTATC TATTATCCTT GATCGAAAAG TGTGATCTCA GTTCAACGAT CAGCTCCTTT 
GGAGTATGCT TTATAGATAC AACGATAGGT GAATTTTATC TCGGCCAATT CGTCGATGAT 
CGCTGCAACT CAAGACTGTT GACTCTGTTG GCTCACCATC CACCAATTCA TGTGATATAC 
GAACGCAGTA ATTTATCGCA AAAGACTTTG CAACTTATAA ATAACACTCT ACCGGCAGCA 
TTAAAAGAGT CGCTTCAGCG CGAGACACAA TTCTGGTCTG CTACTACTGT GCTGAAAAAA 
CTTCATGAAG GAAGTTACTT CAAAAAAGAA GACTCGAATT TTGCATGGCC TGAGGGTCTG 
AAACCGTATT TAAACGAAGG AGACAGCTTG GGTTTAACAC CGGCAGATAA CAAAGAATTA 
GCAGTACACG CACTTGGAGG ATGCGTGTGT TTGTTGAAGG AGTTCTTACT CGAACAGCAA 
TTATTAGCGC AAGGTTGCTT CAATACATAT ATTCCGCCGG ATTTTTCAAC CGCGAATAGC 
CGTACAGGTC TTAATTATGC AAACACCATG GTGATAGATG CCGTTACGAT AAAAAATCTA 
AGGCTTTTCG GAGAAGGTTC ACTCATTAAT GTATTGGATC ATTGCTGCAC TGCATTCGGC 
AAAAGATTGC TGCGCGAATG GGTTTGCAGA CCATCTTGTC GTAAAATCGT TATTATAGAG 
CGCCAAGAAG CTATACAAGA GTTGCTGGAT CGAATGGACG TAATGCAATC GGCTCGCATA 
ATTTTATCAA CTCTGCCAGA CCTCGAAAGA CTTTTGAGCA AGATACATGC TCAAGGAAAT 
GCTGCTAAAA TGAAAAATCA TCCAGAAGGT AGAGCCATAA TGTTTGAAGG TCCGACATAC 
TCGAAGAGGG TGATTGTAGA TTTCACTACG ACACTCGCCA AATTCGAAGA AGTGCTAAAA 
TTCATCGAAT TGTTTGAAGA TTTCAAAAGT AATCTGATAA CTCGCTACAC CAAGTACGAA 
CCGAACGGTG ATTTCCCTCG TTTAAGGGAG ACATTAGACT ATTTTAAGAC CGCATTCAAT 
CATGAAGAAG CTAAGAAACA AGGCTACATC GTTCCAAAAA AAGGAGTTGA CGCTGAATAT 
GATTCAGTTC TGACCGAGCT CGCAGATATC AAAAAAGATC TAGACAAATA CTTGGAAAAA 
CAAAAGCAAC ATTTTGGCGT AAAAGTAACG TTCCATGGAA CAGATAGGAA ACGTTATCAA 
ATTGAGATTC CCGAGTCGCA AGTTAAGAAA GTCGATCCTG GATACGAATT ACAGTCACAA 
AGGAAAGGTT TCAAACGTTA TTATACCGCC GAGGCAAAGG AACTTTTGAC AAGACAAATG 
AATGCCGAAG AGCATAAGGA CAAAGTGCTG AAAGATCTTA ACAGGCGAAT ATTCGCGCAG 
TTCAGTGAAA AATACGATAT GTGGCATGCG GCCGTTTACA AATTGGCCAC CATGGATGTG 
CTTATCTCCC TCGCGGATTA TGCGCGGAAC GGCGATGATA TGTGTATTCC GGAAATTCAC 
GATGGATCCG ATGGCGAGAT ATTCATCAAG ATAAAAGACG GACAACATCC CTGCATCGTA 
TCTGATAACT TTATACCGAA CAACACTTTA TTGGCAACCG ATGGCACCGC CTCTTTCATG 
ATTCTGACGG GACCGAATAT GGGAGGCAAA TCGACTCTTA TGCGCCAAAT GGGCCTGATC 
ACGATCATGG CGCAGATAGG CAGCTACGTT CCAGCTAGCT CGTGTTGCAT GACGCTGGTA 
GATCGTATTT TTACGCGGCT GGGCGCAAAC GACGATATTT TGGCCGGTCA GAGTACGTTT 
TTAGTTGAGC TGAGTGAAAC CGCTACAATA CTGCAACATG CTACACCCTA TTCGCTGGTA 
CTTCTCGATG AATTGGGACG TGGCACGTCA ACTTATGATG GTACGGCAAT AGCGGCTGCG 
GTCGTTGATG CATTGACCAA ACTCAAATGT CGCACATTAT TCTCGACGCA TTACCATTCT 
TTAGTTGAAG ATTATAAAAC TAACGAAGAA GTCACGTTAG CTCATATGGC ATGTATGGTG 
GAAACTGAAG AGGAAGAGGA AGTGTCGCAA GAGACCGTGA CGTTTTTGTA CAAGCTCAGC 
GAAGGGGCAT GTCCGAAATC CTACGGATTC AATGCCGCTC GACTGGCAGG CGTACCGTCT 
GTAATCACAA AGAGAGCTCA CGAGATAGCT AGCAGGATGG AGCAGGAAAC TAATCACAAG 
CACATCTTTA ATGCTCTTTG CAAAGCCAAT GGTGTCAGAA TGAGAAGTCT CATTGCTACC 
ATTTAA