LOC109728340 cDNA ORF clone, Ananas comosus(pineapple)

Gene
Clones
gRNAs

Summary

Gene Symbol	LOC109728340
Entrez Gene ID	109728340
Full Name	putative pentatricopeptide repeat-containing protein At3g08820
Gene Type	protein-coding
Organism	Ananas comosus(pineapple)

mRNA and Protein(s)

mRNA	Protein	Name
XM_020258725.1	XP_020114314.1	putative pentatricopeptide repeat-containing protein At3g08820

Pathways from BioSystems
Gene Ontology

The following LOC109728340 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC109728340 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OAn84279	XM_020258725.1 Latest version!	Ananas comosus putative pentatricopeptide repeat-containing protein At3g08820 (LOC109728340), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	TBD	$426.30 $609.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

LOC109728340 ( XM_020258725.1 ) cDNA ORF clone, Ananas comosus(pineapple) -> XP_020114314.1 Ananas comosus putative pentatricopeptide repeat-containing protein At3g08820 (LOC109728340), mRNA.

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CloneID	OAn84279
Clone ID Related Accession (Same CDS sequence)	XM_020258725.1
Accession Version	XM_020258725.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2103bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-02-14
Organism	Ananas comosus(pineapple)
Product	putative pentatricopeptide repeat-containing protein At3g08820
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_033643.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Ananas comosus Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 3% of CDS bases ##RefSeq-Attributes-END##

ATGTATGGGC CATCTAAAAC CTTAATAACA CGGACAAAGC TCGAGCTTAA GCTCTCCCAT 
GGCGGGAGCA TGTCAACCTC CTCCAAGCGC CTCCTCCTCC ATGGGCGCCA CCCCCTCCGC 
GCCCTCAAGC TACTCCACGG GCGCCTCCTT CGCCTCCACC TCCTCCCCCG CGAGCCCCTC 
CTCCTCAACC TCCTCCTCCG CTCCTCCTTC GCCTCCTCAC ATCCCTCCCA CGCCCTACGC 
CTTCTCCTCG CCTCCCCAAC CCCTCCCAAC CTCTTCCATT ACAACACCAC CATCCGCGGC 
CTCGTCGCCA CCGACTACAT GGCCGATGCC GTGCGCGTGT ACGCCTCCAT GCGCCGCGCG 
GGCGCGTCCC CCGACCACTT CACCTTCCCC TTCGTCCTCA AGGCGTGCGC CCGCCTCGTC 
GACCTCGGCG CCGGCGTACG GATCCATACC CACATAGTCA AATCCGGGTT CGATTCTGAT 
GTCTTCGTTA AGACCAGCCT GGTCTCCTTG TACGCAAAAT GCGGCCTTTT GGATAATGCC 
CAGAAGCTGT TCGACGAAAT GGCCGTGAGA AATGTCGTTT CGTGGACCGC AATCATTAGC 
GGGTACATCG CGGATGGGAG GTTGGAAGAG GCGCTGGGTA TGTTTCGGCG GGCGTTGGAG 
ATGGATTTGA GGCCCGATAG CTTTACGATA GTTAGGGTCT TGACGGCTTG CTCACAGTTG 
GGGGATTTGA AAACAGGGGA GTGGATCCAT AGATTTGTAG AGCAGAAGGG AATGGATCAT 
AATGTCTTTA TTGCTACTTC TCTTGTGGAT TTGTACACTA AATGTGGGAG CATGGATCAC 
GCGCGGAATG TATTTGATCA AATGGCCGAG AAGGACGTTG TTTCTTGGAG CACGATGATT 
GGTGGGTATG CTTCGAATGG ACTTCCTCAA GAAGCGCTAA AGCTCTTCTT CCAAATGCAA 
GATGCAAATA TAAAGCCAGA TTGCTACACC ATTGTTGCGG TTCTTTCTTC TTGTGCTCAA 
TTAGGGGCTT TAGAATTGGG CCACAAAGTG AGTGCTTTAA TTGATATGGA TGAATTTCTT 
ACAAACCCTG TGTTGGGTAC TGCGTTGATC GATATGTATG CTAAGTGTGG AAGCACCACT 
AATGCTTGGG TAGTTTTTCA GAAGATGAAA GAAAAGGATC TTATAGTTTG GAATGCTATG 
ATCTCTGGGC TTGCCATGAC AGGCCACGGA ATGATCTCAT TTGGGCTTTT TGGGCAGATT 
GAGAAGTTGG GTATTCAACC TAATGATAAT ACTTTCATTG GTCTTCTTTG TAGTTGTACT 
CACACGGGTC TTGTAGAAGA TGGACGGCGA CACTTTGATA ATATGAGGAG AGTTTACTTC 
ATAAACCCTA GAATTGAGCA CTATGGTTGT ATGGTTGATC TTCTTGGCCG TGCTGGCTTA 
TTGGAGGAAG CTCATCAGCT GATTAAGGAG ATACCTATGG AAGCAAATGC AGTTGTTTGG 
GGAGCTTTGC TGAGTGGTTG TAAAATTCAT CGAAATGCCC TGTTGGCTGA GTATGTATTG 
AAGAAATTGA TTCAATTAGA GCCGCGAAAT TCTGGGAATT ATGTACTTTT ATCCAATATC 
TATTCCACGA GTGGTAGATG GGATGATGCA GCAAAACTTA GGATAACTAT GAAGGAAAAG 
GGGATTGAAA AGACTCCTGG GTGTAGCTGG GTTGAACATA AAGGTGTAGT TCATGAGTTC 
CGCGTGGGGG ATAAGTCTCA TCCACTCACC GAACAGATCA TTGCAAAGCT TGACGAACTG 
GGTAAGGAGT TAAAAGCTGT GGGTTATACC CCAACAACAG AAGTGGTGTT ATTTGATATA 
GAAGATGAAG AAAAGGAGCA TTCGCTTGAG CATCACAGTG AAAAGTTAGC CATTGCATTT 
TGCCTGACAA CTACAGGACC AGAAGATACA ATTCGTGTGG TTAAGAATCT TAGGGTCTGT 
AATGACTGCC ATGAAGCCAT CAAACTCATT TCAAAGATAA CTAATAGGGA GATCATTGTT 
AGAGACAATA ACCGGTTCCA CTGTTTTAAA GACGGTTTGT GCTCGTGTAA TGATTATTGG 
TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_020114314.1
CDS	1..2103
Translation	MYGPSKTLITRTKLELKLSHGGSMSTSSKRLLLHGRHPLRALKLLHGRLLRLHLLPREPLLLNLLLRSSFASSHPSHALRLLLASPTPPNLFHYNTTIRGLVATDYMADAVRVYASMRRAGASPDHFTFPFVLKACARLVDLGAGVRIHTHIVKSGFDSDVFVKTSLVSLYAKCGLLDNAQKLFDEMAVRNVVSWTAIISGYIADGRLEEALGMFRRALEMDLRPDSFTIVRVLTACSQLGDLKTGEWIHRFVEQKGMDHNVFIATSLVDLYTKCGSMDHARNVFDQMAEKDVVSWSTMIGGYASNGLPQEALKLFFQMQDANIKPDCYTIVAVLSSCAQLGALELGHKVSALIDMDEFLTNPVLGTALIDMYAKCGSTTNAWVVFQKMKEKDLIVWNAMISGLAMTGHGMISFGLFGQIEKLGIQPNDNTFIGLLCSCTHTGLVEDGRRHFDNMRRVYFINPRIEHYGCMVDLLGRAGLLEEAHQLIKEIPMEANAVVWGALLSGCKIHRNALLAEYVLKKLIQLEPRNSGNYVLLSNIYSTSGRWDDAAKLRITMKEKGIEKTPGCSWVEHKGVVHEFRVGDKSHPLTEQIIAKLDELGKELKAVGYTPTTEVVLFDIEDEEKEHSLEHHSEKLAIAFCLTTTGPEDTIRVVKNLRVCNDCHEAIKLISKITNREIIVRDNNRFHCFKDGLCSCNDYW

Target ORF information:

RefSeq Version	XM_020258725.1
Organism	Ananas comosus(pineapple)
Definition	Ananas comosus putative pentatricopeptide repeat-containing protein At3g08820 (LOC109728340), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_020258725.1

ORF Insert Sequence:

ATGTATGGGC CATCTAAAAC CTTAATAACA CGGACAAAGC TCGAGCTTAA GCTCTCCCAT 
GGCGGGAGCA TGTCAACCTC CTCCAAGCGC CTCCTCCTCC ATGGGCGCCA CCCCCTCCGC 
GCCCTCAAGC TACTCCACGG GCGCCTCCTT CGCCTCCACC TCCTCCCCCG CGAGCCCCTC 
CTCCTCAACC TCCTCCTCCG CTCCTCCTTC GCCTCCTCAC ATCCCTCCCA CGCCCTACGC 
CTTCTCCTCG CCTCCCCAAC CCCTCCCAAC CTCTTCCATT ACAACACCAC CATCCGCGGC 
CTCGTCGCCA CCGACTACAT GGCCGATGCC GTGCGCGTGT ACGCCTCCAT GCGCCGCGCG 
GGCGCGTCCC CCGACCACTT CACCTTCCCC TTCGTCCTCA AGGCGTGCGC CCGCCTCGTC 
GACCTCGGCG CCGGCGTACG GATCCATACC CACATAGTCA AATCCGGGTT CGATTCTGAT 
GTCTTCGTTA AGACCAGCCT GGTCTCCTTG TACGCAAAAT GCGGCCTTTT GGATAATGCC 
CAGAAGCTGT TCGACGAAAT GGCCGTGAGA AATGTCGTTT CGTGGACCGC AATCATTAGC 
GGGTACATCG CGGATGGGAG GTTGGAAGAG GCGCTGGGTA TGTTTCGGCG GGCGTTGGAG 
ATGGATTTGA GGCCCGATAG CTTTACGATA GTTAGGGTCT TGACGGCTTG CTCACAGTTG 
GGGGATTTGA AAACAGGGGA GTGGATCCAT AGATTTGTAG AGCAGAAGGG AATGGATCAT 
AATGTCTTTA TTGCTACTTC TCTTGTGGAT TTGTACACTA AATGTGGGAG CATGGATCAC 
GCGCGGAATG TATTTGATCA AATGGCCGAG AAGGACGTTG TTTCTTGGAG CACGATGATT 
GGTGGGTATG CTTCGAATGG ACTTCCTCAA GAAGCGCTAA AGCTCTTCTT CCAAATGCAA 
GATGCAAATA TAAAGCCAGA TTGCTACACC ATTGTTGCGG TTCTTTCTTC TTGTGCTCAA 
TTAGGGGCTT TAGAATTGGG CCACAAAGTG AGTGCTTTAA TTGATATGGA TGAATTTCTT 
ACAAACCCTG TGTTGGGTAC TGCGTTGATC GATATGTATG CTAAGTGTGG AAGCACCACT 
AATGCTTGGG TAGTTTTTCA GAAGATGAAA GAAAAGGATC TTATAGTTTG GAATGCTATG 
ATCTCTGGGC TTGCCATGAC AGGCCACGGA ATGATCTCAT TTGGGCTTTT TGGGCAGATT 
GAGAAGTTGG GTATTCAACC TAATGATAAT ACTTTCATTG GTCTTCTTTG TAGTTGTACT 
CACACGGGTC TTGTAGAAGA TGGACGGCGA CACTTTGATA ATATGAGGAG AGTTTACTTC 
ATAAACCCTA GAATTGAGCA CTATGGTTGT ATGGTTGATC TTCTTGGCCG TGCTGGCTTA 
TTGGAGGAAG CTCATCAGCT GATTAAGGAG ATACCTATGG AAGCAAATGC AGTTGTTTGG 
GGAGCTTTGC TGAGTGGTTG TAAAATTCAT CGAAATGCCC TGTTGGCTGA GTATGTATTG 
AAGAAATTGA TTCAATTAGA GCCGCGAAAT TCTGGGAATT ATGTACTTTT ATCCAATATC 
TATTCCACGA GTGGTAGATG GGATGATGCA GCAAAACTTA GGATAACTAT GAAGGAAAAG 
GGGATTGAAA AGACTCCTGG GTGTAGCTGG GTTGAACATA AAGGTGTAGT TCATGAGTTC 
CGCGTGGGGG ATAAGTCTCA TCCACTCACC GAACAGATCA TTGCAAAGCT TGACGAACTG 
GGTAAGGAGT TAAAAGCTGT GGGTTATACC CCAACAACAG AAGTGGTGTT ATTTGATATA 
GAAGATGAAG AAAAGGAGCA TTCGCTTGAG CATCACAGTG AAAAGTTAGC CATTGCATTT 
TGCCTGACAA CTACAGGACC AGAAGATACA ATTCGTGTGG TTAAGAATCT TAGGGTCTGT 
AATGACTGCC ATGAAGCCAT CAAACTCATT TCAAAGATAA CTAATAGGGA GATCATTGTT 
AGAGACAATA ACCGGTTCCA CTGTTTTAAA GACGGTTTGT GCTCGTGTAA TGATTATTGG 
TGA