LOC109727397 cDNA ORF clone, Ananas comosus(pineapple)

Gene
Clones
gRNAs

Summary

Gene Symbol	LOC109727397
Entrez Gene ID	109727397
Full Name	pentatricopeptide repeat-containing protein At5g27270
Gene Type	protein-coding
Organism	Ananas comosus(pineapple)

mRNA and Protein(s)

mRNA	Protein	Name
XM_020257521.1	XP_020113110.1	pentatricopeptide repeat-containing protein At5g27270

Pathways from BioSystems
Gene Ontology

The following LOC109727397 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC109727397 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OAn83336	XM_020257521.1 Latest version!	Ananas comosus pentatricopeptide repeat-containing protein At5g27270 (LOC109727397), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	19-21	$629.30 $899.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

LOC109727397 ( XM_020257521.1 ) cDNA ORF clone, Ananas comosus(pineapple) -> XP_020113110.1 Ananas comosus pentatricopeptide repeat-containing protein At5g27270 (LOC109727397), mRNA.

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CloneID	OAn83336
Clone ID Related Accession (Same CDS sequence)	XM_020257521.1
Accession Version	XM_020257521.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 3258bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-02-14
Organism	Ananas comosus(pineapple)
Product	pentatricopeptide repeat-containing protein At5g27270
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_033642.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Ananas comosus Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGATTCCC TCCGCTCCCC GTTCCTCTCC CCCTTCCCCT CTCCCTCCCC CAACCAACCC 
CATCGTCGTC TCCCCTCCCC CGCCCCTCTC CGCTCCGCCC TCTCCTCCGA CCCCTGGTCC 
CTCAGCTCCG GCAATGGCGG CAGCGGCGGC GGCGGCGAGA GGCCCCGAAC CAATCCCTAC 
CGCCGGAACC CTCGGAAGCC CCTCTCCGAC GACGACGCGC GGCGCATCAT CCGCGCCAAG 
GCGGCGTACC TCAGCCGCCT CCGCCGCAAC CAGGGGAGCG GCGCCGAGAC CCCGCGGTGG 
ATCCGCCGCA CGCCGGAGCA GATGGTGAGG TACATCGAGG GCGACCGCGA CGGGCACCTG 
TACGGGAGGC ACGTGGTGGC CGCGATCCGG GCGGTGCGGG GCCTCTCGTC GCGGCCCGAG 
GGCTCCTACA ACATGCGGGA GGTGATGGCG TCGTTCGTGG CGAAGCTCAG CTTCAGGGAG 
ATGTGCATCG TGCTCAAGGA GCAGCGCGGG TGGCGCCAGG TTCGGGACTT CTTCGAATGG 
ATGAAGTTGC AGCTGTGTTA CAAACCTAGT GTTATTGTCT ACACTATTGT TCTTAGGGCT 
TATGGCCAAG TTGGAAAGAT CAAACTAGCT GAACAGATCT TTCTGGAGAT GCTCGAAGCT 
GGTTGTGAAC CTGACGAAGT GGCTTGTGGA ACTCTTCTGT GTGCTTATGC TAGGTGGGGC 
CGGCATAAAG ACATGTTGCT ATTCTATTCA GCTGTTCGTA GAAGAGGTGT CTTACCTTCT 
ATTGCCGTAT TTAACTTCAT GATTTCATCT TTGCAAAAGC AGAAGCTGCA TGGAAAAGTC 
ATCCAGTTGT GGAAGCAAAT GTTGGAAGTA GAAGTAGCGC CGAATCGCTT CACTTATACA 
ATTGTTATTA GCTCACATGT TAAAGAAGAT CTCATGGAGG AGGCTTTGGA TATTTTTGGG 
AAAATGAAGA AAGCTGGATT TATCCCTGAA GAGGCAACAT ACGGTCATTT AATCAGCTTA 
ACCGCCAAAA ATGGCAAAAG GGAAGAAGCA TTAAGACTTT ATGAAGAGAT GAGACCTTCG 
GGTATTATCC CAAGTAACTA CACCTGTGCC TCCATGCTTA ATCTATATTA TAAGCATTCA 
GATTACTCGA AAGCTCTCTC ACTTTTTGCA GAGATGGAAA GAAATAAAAT TGTTCCTGAT 
GAAGTCATTT ATGGAATACT TGTTAGGATA TATGGAAAAC TCGGACTTTA TGAGGATGCA 
GAAAGAACAT TCAAAGAGAT TGAAGCATTG GGTATTCTTA GCGATGAGAA AACATATGTG 
GCGATGGCTC AAGTTCATAT TAGTGCTGGG AATTATGAAA AAGCACTAGA AGTTTTGGAA 
GTTATGAGGT CTAGAAACGT TGAACTGTCG AATTTTGCAT ATAGTGCTTT ACTTCGATGT 
TATGTTGCCA AGGAAGACGT AGCTTCGGCA GAAGCTGCTT TTCAAGCACT ATCTAAAGCT 
AGCCTTCCTG ATGCTGTTTG CTTTAATGAT TTACTTGTGT TGTATGTAAA ATTGGGTCTT 
CTGGAAAAGG CCAAGGGATT GATCTCCCAA ATGAGAGAAA ATGAGCTTAA ATTTGATGAG 
AACCTCTATA AGACTGTTAT GGAAGTATAC TGCAGAGAGG GAAAGATCGA CGATGCTGAA 
AAATTACTTG AAGATATGGA GAATAATGGG TTTGGTATGG ATAAAACAAC TAGGGCATCG 
CTAATGGCAT TATATGGGAA AGCAGGAGAG CTTAGGAAAG CAGAGAATTT GTTAAGGACA 
ACACAGCAAC CAGATACCAA TGCACTTGGT GTAATGCTCC GCATATATTT GGAAACTGGT 
GATAGCTATA ATTCCAATGA GATCTTGAAA TCCATGTTGG AGACAAATTT TGGTCTATCT 
GCAGCATGCC AATTGATCTG CAAATTTGCT AGGGAAGGGA ATATAGCGCG GGCTCAGTTC 
TTATACGACC AATTAATTAA ATTAGGTTTC AGACCTGAGG ACTCTGCAGC TGCTTCTTTA 
ATTACTCGAT ATGGTCAGAT CCAGCAGTTA GAACAAGCCC AGGAAGTTTT TAAGTCAGCG 
TCGAACTCTT TGGCAATAGG AGCAACTCTT TGCAATGCCA TGGTTGATGC TTTTTGCAAA 
TGTGGCAAAG TTGATGAAGC AAACCAACTC TACAGGGAAT CAGTTAGTCT CGGCAATACG 
CAAGATGCAG TCACTATCAG CATACTTGTA AATGCTTTAG CTAAGCATGG GAAACATCAG 
GAGGCAGAGT GCATTATCAA TCGAAGTTTG GACTATGAAG TGGCACTTGA TACTGTTGCA 
TATAATACTT TTATTAAGTC TATGCTAGAT GCAGGTAAGT TGCACTCCGC CATCAGTATA 
TATGATCGCA TGATCTCTTC TGGTGTGCCT CCGTCTCTTC AAACTTACAA CACAATGATT 
AGTGTTTATG GCCAAGGAGG CAAATTGGAG AACGCTATTG AGATGTTTAA TGCTGCGAAG 
GACTTGGGCT TTTCTGTTGA TGAGAAAGCA TACACAAATA TGCTTACCTA CTATGGGAAA 
GCTGGTCGGT GCCCGGAGGC ATCTCTATTA TTCAGTAAAA TGAAGGAAGA TGGAATTATA 
CCTGGAAAGA TCAGTTACAA TTCCATGATC AACGTCTACG CCACTTCTGG TCTACACCGC 
AAAGTGGAAA TCCTTTTCCA AGAGATGCTG GAAACTGGGC ATCGTCCCGA TTCTTTTACC 
TATCTCGCAC TGATCCGAGC CTACACCGAA AGTGGAAATT ACCTCAAAGT GGAGGAAACA 
ATTCATGAAA TGCTAAACGA GGGGATAACT CCCTCGTGTT CCCATTTCAA TCACCTCATT 
TTCGCCCTTT TAAAGGAAGG GCTTATTCTA GAAGCCCAAA GAATGTACAA CCAAATGCGG 
CAAATGGAGA TAGCTCCTGA TTTGGCTTGT TGTAGAAGCA TGATGAGGGC TTATTTGGAT 
TACGGTCTTA TAAACGAAGG CATTTCTTTC TTTGAGACAA TCAACGAGTC TATAAAGCCC 
GACAGTTTCA TCTTCAGTGC GGCCATTCAT CTCTACGAGT ACGCGGGAAA AGAATCTGAA 
GCTGGGGATA TTTTCGACAC GATGAATATA TTAGGTCTCT TGTTTCTGAG AAATTTAAGG 
GTCGGAGCGA AGTGTGAAAC TGCATCGGAA GCTAACACTA GAATTCAAAC TGAGGGTGGG 
GAAGTACACT GTATATAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_020113110.1
CDS	54..3311
Translation	MDSLRSPFLSPFPSPSPNQPHRRLPSPAPLRSALSSDPWSLSSGNGGSGGGGERPRTNPYRRNPRKPLSDDDARRIIRAKAAYLSRLRRNQGSGAETPRWIRRTPEQMVRYIEGDRDGHLYGRHVVAAIRAVRGLSSRPEGSYNMREVMASFVAKLSFREMCIVLKEQRGWRQVRDFFEWMKLQLCYKPSVIVYTIVLRAYGQVGKIKLAEQIFLEMLEAGCEPDEVACGTLLCAYARWGRHKDMLLFYSAVRRRGVLPSIAVFNFMISSLQKQKLHGKVIQLWKQMLEVEVAPNRFTYTIVISSHVKEDLMEEALDIFGKMKKAGFIPEEATYGHLISLTAKNGKREEALRLYEEMRPSGIIPSNYTCASMLNLYYKHSDYSKALSLFAEMERNKIVPDEVIYGILVRIYGKLGLYEDAERTFKEIEALGILSDEKTYVAMAQVHISAGNYEKALEVLEVMRSRNVELSNFAYSALLRCYVAKEDVASAEAAFQALSKASLPDAVCFNDLLVLYVKLGLLEKAKGLISQMRENELKFDENLYKTVMEVYCREGKIDDAEKLLEDMENNGFGMDKTTRASLMALYGKAGELRKAENLLRTTQQPDTNALGVMLRIYLETGDSYNSNEILKSMLETNFGLSAACQLICKFAREGNIARAQFLYDQLIKLGFRPEDSAAASLITRYGQIQQLEQAQEVFKSASNSLAIGATLCNAMVDAFCKCGKVDEANQLYRESVSLGNTQDAVTISILVNALAKHGKHQEAECIINRSLDYEVALDTVAYNTFIKSMLDAGKLHSAISIYDRMISSGVPPSLQTYNTMISVYGQGGKLENAIEMFNAAKDLGFSVDEKAYTNMLTYYGKAGRCPEASLLFSKMKEDGIIPGKISYNSMINVYATSGLHRKVEILFQEMLETGHRPDSFTYLALIRAYTESGNYLKVEETIHEMLNEGITPSCSHFNHLIFALLKEGLILEAQRMYNQMRQMEIAPDLACCRSMMRAYLDYGLINEGISFFETINESIKPDSFIFSAAIHLYEYAGKESEAGDIFDTMNILGLLFLRNLRVGAKCETASEANTRIQTEGGEVHCI

Target ORF information:

RefSeq Version	XM_020257521.1
Organism	Ananas comosus(pineapple)
Definition	Ananas comosus pentatricopeptide repeat-containing protein At5g27270 (LOC109727397), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_020257521.1

ORF Insert Sequence:

ATGGATTCCC TCCGCTCCCC GTTCCTCTCC CCCTTCCCCT CTCCCTCCCC CAACCAACCC 
CATCGTCGTC TCCCCTCCCC CGCCCCTCTC CGCTCCGCCC TCTCCTCCGA CCCCTGGTCC 
CTCAGCTCCG GCAATGGCGG CAGCGGCGGC GGCGGCGAGA GGCCCCGAAC CAATCCCTAC 
CGCCGGAACC CTCGGAAGCC CCTCTCCGAC GACGACGCGC GGCGCATCAT CCGCGCCAAG 
GCGGCGTACC TCAGCCGCCT CCGCCGCAAC CAGGGGAGCG GCGCCGAGAC CCCGCGGTGG 
ATCCGCCGCA CGCCGGAGCA GATGGTGAGG TACATCGAGG GCGACCGCGA CGGGCACCTG 
TACGGGAGGC ACGTGGTGGC CGCGATCCGG GCGGTGCGGG GCCTCTCGTC GCGGCCCGAG 
GGCTCCTACA ACATGCGGGA GGTGATGGCG TCGTTCGTGG CGAAGCTCAG CTTCAGGGAG 
ATGTGCATCG TGCTCAAGGA GCAGCGCGGG TGGCGCCAGG TTCGGGACTT CTTCGAATGG 
ATGAAGTTGC AGCTGTGTTA CAAACCTAGT GTTATTGTCT ACACTATTGT TCTTAGGGCT 
TATGGCCAAG TTGGAAAGAT CAAACTAGCT GAACAGATCT TTCTGGAGAT GCTCGAAGCT 
GGTTGTGAAC CTGACGAAGT GGCTTGTGGA ACTCTTCTGT GTGCTTATGC TAGGTGGGGC 
CGGCATAAAG ACATGTTGCT ATTCTATTCA GCTGTTCGTA GAAGAGGTGT CTTACCTTCT 
ATTGCCGTAT TTAACTTCAT GATTTCATCT TTGCAAAAGC AGAAGCTGCA TGGAAAAGTC 
ATCCAGTTGT GGAAGCAAAT GTTGGAAGTA GAAGTAGCGC CGAATCGCTT CACTTATACA 
ATTGTTATTA GCTCACATGT TAAAGAAGAT CTCATGGAGG AGGCTTTGGA TATTTTTGGG 
AAAATGAAGA AAGCTGGATT TATCCCTGAA GAGGCAACAT ACGGTCATTT AATCAGCTTA 
ACCGCCAAAA ATGGCAAAAG GGAAGAAGCA TTAAGACTTT ATGAAGAGAT GAGACCTTCG 
GGTATTATCC CAAGTAACTA CACCTGTGCC TCCATGCTTA ATCTATATTA TAAGCATTCA 
GATTACTCGA AAGCTCTCTC ACTTTTTGCA GAGATGGAAA GAAATAAAAT TGTTCCTGAT 
GAAGTCATTT ATGGAATACT TGTTAGGATA TATGGAAAAC TCGGACTTTA TGAGGATGCA 
GAAAGAACAT TCAAAGAGAT TGAAGCATTG GGTATTCTTA GCGATGAGAA AACATATGTG 
GCGATGGCTC AAGTTCATAT TAGTGCTGGG AATTATGAAA AAGCACTAGA AGTTTTGGAA 
GTTATGAGGT CTAGAAACGT TGAACTGTCG AATTTTGCAT ATAGTGCTTT ACTTCGATGT 
TATGTTGCCA AGGAAGACGT AGCTTCGGCA GAAGCTGCTT TTCAAGCACT ATCTAAAGCT 
AGCCTTCCTG ATGCTGTTTG CTTTAATGAT TTACTTGTGT TGTATGTAAA ATTGGGTCTT 
CTGGAAAAGG CCAAGGGATT GATCTCCCAA ATGAGAGAAA ATGAGCTTAA ATTTGATGAG 
AACCTCTATA AGACTGTTAT GGAAGTATAC TGCAGAGAGG GAAAGATCGA CGATGCTGAA 
AAATTACTTG AAGATATGGA GAATAATGGG TTTGGTATGG ATAAAACAAC TAGGGCATCG 
CTAATGGCAT TATATGGGAA AGCAGGAGAG CTTAGGAAAG CAGAGAATTT GTTAAGGACA 
ACACAGCAAC CAGATACCAA TGCACTTGGT GTAATGCTCC GCATATATTT GGAAACTGGT 
GATAGCTATA ATTCCAATGA GATCTTGAAA TCCATGTTGG AGACAAATTT TGGTCTATCT 
GCAGCATGCC AATTGATCTG CAAATTTGCT AGGGAAGGGA ATATAGCGCG GGCTCAGTTC 
TTATACGACC AATTAATTAA ATTAGGTTTC AGACCTGAGG ACTCTGCAGC TGCTTCTTTA 
ATTACTCGAT ATGGTCAGAT CCAGCAGTTA GAACAAGCCC AGGAAGTTTT TAAGTCAGCG 
TCGAACTCTT TGGCAATAGG AGCAACTCTT TGCAATGCCA TGGTTGATGC TTTTTGCAAA 
TGTGGCAAAG TTGATGAAGC AAACCAACTC TACAGGGAAT CAGTTAGTCT CGGCAATACG 
CAAGATGCAG TCACTATCAG CATACTTGTA AATGCTTTAG CTAAGCATGG GAAACATCAG 
GAGGCAGAGT GCATTATCAA TCGAAGTTTG GACTATGAAG TGGCACTTGA TACTGTTGCA 
TATAATACTT TTATTAAGTC TATGCTAGAT GCAGGTAAGT TGCACTCCGC CATCAGTATA 
TATGATCGCA TGATCTCTTC TGGTGTGCCT CCGTCTCTTC AAACTTACAA CACAATGATT 
AGTGTTTATG GCCAAGGAGG CAAATTGGAG AACGCTATTG AGATGTTTAA TGCTGCGAAG 
GACTTGGGCT TTTCTGTTGA TGAGAAAGCA TACACAAATA TGCTTACCTA CTATGGGAAA 
GCTGGTCGGT GCCCGGAGGC ATCTCTATTA TTCAGTAAAA TGAAGGAAGA TGGAATTATA 
CCTGGAAAGA TCAGTTACAA TTCCATGATC AACGTCTACG CCACTTCTGG TCTACACCGC 
AAAGTGGAAA TCCTTTTCCA AGAGATGCTG GAAACTGGGC ATCGTCCCGA TTCTTTTACC 
TATCTCGCAC TGATCCGAGC CTACACCGAA AGTGGAAATT ACCTCAAAGT GGAGGAAACA 
ATTCATGAAA TGCTAAACGA GGGGATAACT CCCTCGTGTT CCCATTTCAA TCACCTCATT 
TTCGCCCTTT TAAAGGAAGG GCTTATTCTA GAAGCCCAAA GAATGTACAA CCAAATGCGG 
CAAATGGAGA TAGCTCCTGA TTTGGCTTGT TGTAGAAGCA TGATGAGGGC TTATTTGGAT 
TACGGTCTTA TAAACGAAGG CATTTCTTTC TTTGAGACAA TCAACGAGTC TATAAAGCCC 
GACAGTTTCA TCTTCAGTGC GGCCATTCAT CTCTACGAGT ACGCGGGAAA AGAATCTGAA 
GCTGGGGATA TTTTCGACAC GATGAATATA TTAGGTCTCT TGTTTCTGAG AAATTTAAGG 
GTCGGAGCGA AGTGTGAAAC TGCATCGGAA GCTAACACTA GAATTCAAAC TGAGGGTGGG 
GAAGTACACT GTATATAG