LOC105420397 cDNA ORF clone, Amborella trichopoda

Gene
Clones
gRNAs

Summary

Gene Symbol	LOC105420397
Entrez Gene ID	105420397
Full Name	putative pentatricopeptide repeat-containing protein At5g52630
Gene Type	protein-coding
Organism	Amborella trichopoda

mRNA and Protein(s)

mRNA	Protein	Name
XM_011623854.2	XP_011622156.2	putative pentatricopeptide repeat-containing protein At5g52630

Pathways from BioSystems
Gene Ontology

The following LOC105420397 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC105420397 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OAm47208	XM_011623854.2 Latest version!	Amborella trichopoda putative pentatricopeptide repeat-containing protein At5g52630 (LOC105420397), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	14-16	$426.30 $609.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

LOC105420397 ( XM_011623854.2 ) cDNA ORF clone, Amborella trichopoda -> XP_011622156.2 Amborella trichopoda putative pentatricopeptide repeat-containing protein At5g52630 (LOC105420397), mRNA.

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CloneID	OAm47208
Clone ID Related Accession (Same CDS sequence)	XM_011623854.2
Accession Version	XM_011623854.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2124bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-04-03
Organism	Amborella trichopoda
Product	putative pentatricopeptide repeat-containing protein At5g52630
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_006497930.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 4, 2017 this sequence version replaced XM_011623854.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Amborella trichopoda Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGCCATGGC AAATACCAAA TCTTCACATC GCAAAACCAC GTTCAAAAAC CATCAGGTCC 
CTTCTTATTC CGTTGTTTTC AATCAAAACA AAAGAACCCA TCAACACAAT GCCCACTTAC 
TTACCTGAAG CCATGAACTA TGTAGATGAA ACAGAGGCAC GCAGACTTCA GCGTCGCACA 
GGGAGCCATG CATCTTCTGA AACTGATGCA ACAATTGGGA ATAGTCGGTT ATATGAATCA 
GGAAGAGCAG ATCATACCCA ACAAATGTTT GATAGTATGA ACCAGAGATA TGAAGCCTCT 
TGGTCCCTAG AAATTGCAGG CCATGCAGAG GCCGGAAACC CCAATAAAGC CCTTGAGCTT 
TTCTTCGAGA TGAGAAGAGC AAATTTACAA CCAACCCATC TCACATTTTC AAAGGTGTTG 
AAGGTCTGCA CCAGTTTAAG GCACCTAAGC TTGGGCATGC AGATCCATGG CTGCACGATA 
AGAAATGGAT TAATCCACCA TGTATTTGTT TCCAACTCCA CAATCAAGTT GTATTCAGAT 
AGTGGCTTCT TGGCTGAAAG CGTCAGCCTT TTCAAGGAAG CCTCAATCAG GGATCAAGTC 
ACATGGGCCT TAATCATCTC GTCCTGTGCT CGCATTGGAA GCGTGGAAAA ATCTCTGAGT 
CTTTTCAAAG AAATGAATAA TGGAGGCCTA AAACCAGACG GGTTTGTCCT TGCCTCTGTT 
ATCAATGCTT GTTCGAGAAT CAACGGTCTC GAAAAGGGCA AACAAGTCCA TGGGCACATC 
ATTAAAACTG GTTTCGCGTC CAGTTTATCA GTCGGGAATG CAGTGACAAG CTTCTACATG 
AGAGGCAACA TGCTCACCGA TGCTTATTTA GTGTTTGATG GCATGGTGCA TAAAGATGTC 
ATCTCATGGA CAACCATGCT CTCTGGTTTG GTACAATCTG GTTATGGTGA TAAGGCCATG 
GATGTTTTTG ACCAGATGCA TCATCTTGGG CTTTATAAAG ATGGATTCAT ATTTGCAGGT 
GCTCTGGGGG CTTGTAGCCT GTTTGGATCC CTTGAAAAAG GTGCACAAAT CCATGGCCTC 
ATAACCCGAA ATGGGTTCGA ATCAGAGGCG TTTATAGGAA ACTCTCTGAT AGACATGTAC 
TCAAAGTGTG GGAGCATAGA GATGGCACAA AAGGTTTTCA ATGGCATGCC ATCTCGAAAC 
ACAGTTTCAT GGACAGCAAT TATAATAGGA TATGCCCAAA ATGGACACGG GAATAAAACT 
CTAGGGCTCT TTGAGGAGAT GCAAGGGTTG GGGATAAAAC CAGACCATGT AACTTTTATA 
GGGGTTCTCT CAGCTTGTAG GCATTCTGGT CTATTAGAAG CTGGCGAAAA ATATTTTCGA 
GACATGGAAA GAATTCATGG AATCAAAGCC AGACTTGAGC ATTATGCCTG CATGATCGAC 
CTGCTTGCTC GAAAGGGATG CTTTACCAAA GCTTCAGATC TGCTAAAATC AATGCCCTAT 
GAACCAGACC CAATTATTTG GGGTACTTTA TTGGGAGCTT GCAGGGTTCA TAATAATACC 
CAATTGGCTG AAGAAGTAGC AAAGAGGCTA CTGGCTATTG ACCCAGATTG TGCAGGGACC 
CATGTCCTGC TCGCAAATAT ATACTCAGCC GCCGAAAGAT GGGAAGATGT GGCTAAGGTT 
AGGAAATTGA TGAGAGAGAA AGGGTTGATG AAAGAGAAAG GAAGAAGTTG GATATCAGTG 
AGAAACCAAG TTTATTCTTT TGTTATGGAA GATAGATCAA AGCCACAAAC ACGAATGATA 
TATGAGATGC TTGCAAGGCT CAGAAAAGAG ATTGAGCTTG TGGGTTATGT TCCTGATACA 
GGATTTGCGC TTCATGATGT AGAAGAGGAA GTGAAGAAGC AGGTTCTATG GTATCATAGT 
GAGAAACTGG CAATAGCTTT TGGGTTCCTA ATGACACCTA GTGGGGCAGT GATCAGAGTT 
TGCAAGAACC TTAGAATTTG TGGGGATTGT CACTCTTCAA CTAAGTTTAT TTCAAAGGTT 
ACAGGCCGAG AAATTATAGT AAGGGATGCA CGCCGTTTCC ACCATTTTAC GGATGGGCAG 
TGCTCATGTG GAGATTATTG GTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_011622156.2
CDS	347..2470
Translation	MPWQIPNLHIAKPRSKTIRSLLIPLFSIKTKEPINTMPTYLPEAMNYVDETEARRLQRRTGSHASSETDATIGNSRLYESGRADHTQQMFDSMNQRYEASWSLEIAGHAEAGNPNKALELFFEMRRANLQPTHLTFSKVLKVCTSLRHLSLGMQIHGCTIRNGLIHHVFVSNSTIKLYSDSGFLAESVSLFKEASIRDQVTWALIISSCARIGSVEKSLSLFKEMNNGGLKPDGFVLASVINACSRINGLEKGKQVHGHIIKTGFASSLSVGNAVTSFYMRGNMLTDAYLVFDGMVHKDVISWTTMLSGLVQSGYGDKAMDVFDQMHHLGLYKDGFIFAGALGACSLFGSLEKGAQIHGLITRNGFESEAFIGNSLIDMYSKCGSIEMAQKVFNGMPSRNTVSWTAIIIGYAQNGHGNKTLGLFEEMQGLGIKPDHVTFIGVLSACRHSGLLEAGEKYFRDMERIHGIKARLEHYACMIDLLARKGCFTKASDLLKSMPYEPDPIIWGTLLGACRVHNNTQLAEEVAKRLLAIDPDCAGTHVLLANIYSAAERWEDVAKVRKLMREKGLMKEKGRSWISVRNQVYSFVMEDRSKPQTRMIYEMLARLRKEIELVGYVPDTGFALHDVEEEVKKQVLWYHSEKLAIAFGFLMTPSGAVIRVCKNLRICGDCHSSTKFISKVTGREIIVRDARRFHHFTDGQCSCGDYW

Target ORF information:

RefSeq Version	XM_011623854.2
Organism	Amborella trichopoda
Definition	Amborella trichopoda putative pentatricopeptide repeat-containing protein At5g52630 (LOC105420397), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_011623854.2

ORF Insert Sequence:

ATGCCATGGC AAATACCAAA TCTTCACATC GCAAAACCAC GTTCAAAAAC CATCAGGTCC 
CTTCTTATTC CGTTGTTTTC AATCAAAACA AAAGAACCCA TCAACACAAT GCCCACTTAC 
TTACCTGAAG CCATGAACTA TGTAGATGAA ACAGAGGCAC GCAGACTTCA GCGTCGCACA 
GGGAGCCATG CATCTTCTGA AACTGATGCA ACAATTGGGA ATAGTCGGTT ATATGAATCA 
GGAAGAGCAG ATCATACCCA ACAAATGTTT GATAGTATGA ACCAGAGATA TGAAGCCTCT 
TGGTCCCTAG AAATTGCAGG CCATGCAGAG GCCGGAAACC CCAATAAAGC CCTTGAGCTT 
TTCTTCGAGA TGAGAAGAGC AAATTTACAA CCAACCCATC TCACATTTTC AAAGGTGTTG 
AAGGTCTGCA CCAGTTTAAG GCACCTAAGC TTGGGCATGC AGATCCATGG CTGCACGATA 
AGAAATGGAT TAATCCACCA TGTATTTGTT TCCAACTCCA CAATCAAGTT GTATTCAGAT 
AGTGGCTTCT TGGCTGAAAG CGTCAGCCTT TTCAAGGAAG CCTCAATCAG GGATCAAGTC 
ACATGGGCCT TAATCATCTC GTCCTGTGCT CGCATTGGAA GCGTGGAAAA ATCTCTGAGT 
CTTTTCAAAG AAATGAATAA TGGAGGCCTA AAACCAGACG GGTTTGTCCT TGCCTCTGTT 
ATCAATGCTT GTTCGAGAAT CAACGGTCTC GAAAAGGGCA AACAAGTCCA TGGGCACATC 
ATTAAAACTG GTTTCGCGTC CAGTTTATCA GTCGGGAATG CAGTGACAAG CTTCTACATG 
AGAGGCAACA TGCTCACCGA TGCTTATTTA GTGTTTGATG GCATGGTGCA TAAAGATGTC 
ATCTCATGGA CAACCATGCT CTCTGGTTTG GTACAATCTG GTTATGGTGA TAAGGCCATG 
GATGTTTTTG ACCAGATGCA TCATCTTGGG CTTTATAAAG ATGGATTCAT ATTTGCAGGT 
GCTCTGGGGG CTTGTAGCCT GTTTGGATCC CTTGAAAAAG GTGCACAAAT CCATGGCCTC 
ATAACCCGAA ATGGGTTCGA ATCAGAGGCG TTTATAGGAA ACTCTCTGAT AGACATGTAC 
TCAAAGTGTG GGAGCATAGA GATGGCACAA AAGGTTTTCA ATGGCATGCC ATCTCGAAAC 
ACAGTTTCAT GGACAGCAAT TATAATAGGA TATGCCCAAA ATGGACACGG GAATAAAACT 
CTAGGGCTCT TTGAGGAGAT GCAAGGGTTG GGGATAAAAC CAGACCATGT AACTTTTATA 
GGGGTTCTCT CAGCTTGTAG GCATTCTGGT CTATTAGAAG CTGGCGAAAA ATATTTTCGA 
GACATGGAAA GAATTCATGG AATCAAAGCC AGACTTGAGC ATTATGCCTG CATGATCGAC 
CTGCTTGCTC GAAAGGGATG CTTTACCAAA GCTTCAGATC TGCTAAAATC AATGCCCTAT 
GAACCAGACC CAATTATTTG GGGTACTTTA TTGGGAGCTT GCAGGGTTCA TAATAATACC 
CAATTGGCTG AAGAAGTAGC AAAGAGGCTA CTGGCTATTG ACCCAGATTG TGCAGGGACC 
CATGTCCTGC TCGCAAATAT ATACTCAGCC GCCGAAAGAT GGGAAGATGT GGCTAAGGTT 
AGGAAATTGA TGAGAGAGAA AGGGTTGATG AAAGAGAAAG GAAGAAGTTG GATATCAGTG 
AGAAACCAAG TTTATTCTTT TGTTATGGAA GATAGATCAA AGCCACAAAC ACGAATGATA 
TATGAGATGC TTGCAAGGCT CAGAAAAGAG ATTGAGCTTG TGGGTTATGT TCCTGATACA 
GGATTTGCGC TTCATGATGT AGAAGAGGAA GTGAAGAAGC AGGTTCTATG GTATCATAGT 
GAGAAACTGG CAATAGCTTT TGGGTTCCTA ATGACACCTA GTGGGGCAGT GATCAGAGTT 
TGCAAGAACC TTAGAATTTG TGGGGATTGT CACTCTTCAA CTAAGTTTAT TTCAAAGGTT 
ACAGGCCGAG AAATTATAGT AAGGGATGCA CGCCGTTTCC ACCATTTTAC GGATGGGCAG 
TGCTCATGTG GAGATTATTG GTGA