| Gene Symbol | HNF4A |
| Entrez Gene ID | 733636 |
| Full Name | hepatocyte nuclear factor 4 alpha |
| Synonyms | HNF-4alpha |
| Gene Type | protein-coding |
| Organism | Sus scrofa(pig) |
| Genome |
ORF » Species Summary » Sus scrofa » HNF4A cDNA ORF clone
| Gene Symbol | HNF4A |
| Entrez Gene ID | 733636 |
| Full Name | hepatocyte nuclear factor 4 alpha |
| Synonyms | HNF-4alpha |
| Gene Type | protein-coding |
| Organism | Sus scrofa(pig) |
| Genome |
| mRNA | Protein | Name |
|---|---|---|
| XM_005672953.3 | XP_005673010.1 | hepatocyte nuclear factor 4-alpha isoform X3 |
| XM_005672952.2 | XP_005673009.1 | hepatocyte nuclear factor 4-alpha isoform X2 |
| XM_005672952.3 | XP_005673009.1 | hepatocyte nuclear factor 4-alpha isoform X2 |
| XM_021077331.1 | XP_020932990.1 | hepatocyte nuclear factor 4-alpha isoform X4 |
| XM_005672951.2 | XP_005673008.1 | hepatocyte nuclear factor 4-alpha isoform X1 |
| XM_005672953.2 | XP_005673010.1 | hepatocyte nuclear factor 4-alpha isoform X3 |
| XM_005672951.3 | XP_005673008.1 | hepatocyte nuclear factor 4-alpha isoform X1 |
| NM_001044571.1 | NP_001038036.1 | hepatocyte nuclear factor 4-alpha |
Characterization of a putative cis-regulatory element that controls transcriptional activity of the pig uroplakin II gene promoter.
Kwon DN, Park MR, Park JY, Cho SG, Park C, Oh JW, Song H, Kim JH, Kim JH
Biochemical and biophysical research communications410(2)264-9(2011 Jul)
Hepatocyte nuclear factor-4 mediates apolipoprotein A-IV transcriptional regulation by fatty acid in newborn swine enterocytes.
Leng S, Lu S, Yao Y, Kan Z, Morris GS, Stair BR, Cherny MA, Black DD
American journal of physiology. Gastrointestinal and liver physiology293(2)G475-83(2007 Aug)
PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences.
Uenishi H, Eguchi-Ogawa T, Shinkai H, Okumura N, Suzuki K, Toki D, Hamasima N, Awata T
Nucleic acids research35(Database issue)D650-3(2007 Jan)
PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries.
Uenishi H, Eguchi T, Suzuki K, Sawazaki T, Toki D, Shinkai H, Okumura N, Hamasima N, Awata T
Nucleic acids research32(Database issue)D484-8(2004 Jan)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
HNF4 positively regulates pUPII gene promoter activity.
Title: Characterization of a putative cis-regulatory element that controls transcriptional activity of the pig uroplakin II gene promoter.
The following HNF4A gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the HNF4A cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
| CloneID | OSe29459 | |
| Clone ID Related Accession (Same CDS sequence) | NM_001044571.1 | |
| Accession Version | NM_001044571.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1425bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2016-07-28 | |
| Organism | Sus scrofa(pig) | |
| Product | hepatocyte nuclear factor 4-alpha | |
| Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from DQ061106.1. ##Evidence-Data-START## Transcript exon combination :: DQ061106.1, DQ450900.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1969400, SAMEA1969720 [ECO:0000348] ##Evidence-Data-END## | |
1 | ATGCGCCTCT CCAAAACCCT GGTCGACATG GACATGGCCG ACTACAGTGC TGCGCTGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001038036.1 |
| CDS | 167..1591 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001044571.1 |
1 | ATGCGCCTCT CCAAAACCCT GGTCGACATG GACATGGCCG ACTACAGTGC TGCGCTGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe25012 | |
| Clone ID Related Accession (Same CDS sequence) | XM_005672951.2 | |
| Accession Version | XM_005672951.2 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1455bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2015-09-10 | |
| Organism | Sus scrofa(Pig) | |
| Product | hepatocyte nuclear factor 4-alpha isoform X1 | |
| Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003612582.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 11, 2015 this sequence version replaced XM_005672951.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGCGCCTCT CCAAAACCCT GGTCGACATG GACATGGCCG ACTACAGTGC TGCGCTGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_005673008.1 |
| CDS | 135..1589 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_005672951.2 |
1 | ATGCGCCTCT CCAAAACCCT GGTCGACATG GACATGGCCG ACTACAGTGC TGCGCTGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe25013 | |
| Clone ID Related Accession (Same CDS sequence) | XM_005672952.2 | |
| Accession Version | XM_005672952.2 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1395bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2015-09-10 | |
| Organism | Sus scrofa(Pig) | |
| Product | hepatocyte nuclear factor 4-alpha isoform X2 | |
| Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003612582.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 11, 2015 this sequence version replaced XM_005672952.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGCGCCTCT CCAAAACCCT GGTCGACATG GACATGGCCG ACTACAGTGC TGCGCTGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_005673009.1 |
| CDS | 135..1529 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_005672952.2 |
1 | ATGCGCCTCT CCAAAACCCT GGTCGACATG GACATGGCCG ACTACAGTGC TGCGCTGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe25014 | |
| Clone ID Related Accession (Same CDS sequence) | XM_005672953.2 | |
| Accession Version | XM_005672953.2 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1389bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2015-09-10 | |
| Organism | Sus scrofa(Pig) | |
| Product | hepatocyte nuclear factor 4-alpha isoform X3 | |
| Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003612582.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 11, 2015 this sequence version replaced XM_005672953.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGGTCAGTG TGAACGTGCC CCTCGGGGCT CCGGTGGAGA GTCCCTATGA CACATCCCCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_005673010.1 |
| CDS | 94..1482 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_005672953.2 |
1 | ATGGTCAGTG TGAACGTGCC CCTCGGGGCT CCGGTGGAGA GTCCCTATGA CACATCCCCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe240956 | |
| Clone ID Related Accession (Same CDS sequence) | XM_005672951.3 | |
| Accession Version | XM_005672951.3 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1455bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-05-12 | |
| Organism | Sus scrofa(pig) | |
| Product | hepatocyte nuclear factor 4-alpha isoform X1 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010459.5) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On May 13, 2017 this sequence version replaced XM_005672951.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGCGCCTCT CCAAAACCCT GGTCGACATG GACATGGCCG ACTACAGTGC TGCGCTGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_005673008.1 |
| CDS | 167..1621 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_005672951.3 |
1 | ATGCGCCTCT CCAAAACCCT GGTCGACATG GACATGGCCG ACTACAGTGC TGCGCTGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe240957 | |
| Clone ID Related Accession (Same CDS sequence) | XM_005672952.3 | |
| Accession Version | XM_005672952.3 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1395bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-05-12 | |
| Organism | Sus scrofa(pig) | |
| Product | hepatocyte nuclear factor 4-alpha isoform X2 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010459.5) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On May 13, 2017 this sequence version replaced XM_005672952.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGCGCCTCT CCAAAACCCT GGTCGACATG GACATGGCCG ACTACAGTGC TGCGCTGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_005673009.1 |
| CDS | 166..1560 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_005672952.3 |
1 | ATGCGCCTCT CCAAAACCCT GGTCGACATG GACATGGCCG ACTACAGTGC TGCGCTGGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe240958 | |
| Clone ID Related Accession (Same CDS sequence) | XM_005672953.3 | |
| Accession Version | XM_005672953.3 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1389bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-05-12 | |
| Organism | Sus scrofa(pig) | |
| Product | hepatocyte nuclear factor 4-alpha isoform X3 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010459.5) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On May 13, 2017 this sequence version replaced XM_005672953.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGGTCAGTG TGAACGTGCC CCTCGGGGCT CCGGTGGAGA GTCCCTATGA CACATCCCCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_005673010.1 |
| CDS | 102..1490 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_005672953.3 |
1 | ATGGTCAGTG TGAACGTGCC CCTCGGGGCT CCGGTGGAGA GTCCCTATGA CACATCCCCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe240959 | |
| Clone ID Related Accession (Same CDS sequence) | XM_021077331.1 | |
| Accession Version | XM_021077331.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1359bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-05-12 | |
| Organism | Sus scrofa(pig) | |
| Product | hepatocyte nuclear factor 4-alpha isoform X4 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010459.5) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGGTCAGTG TGAACGTGCC CCTCGGGGCT CCGGTGGAGA GTCCCTATGA CACATCCCCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_020932990.1 |
| CDS | 102..1460 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_021077331.1 |
1 | ATGGTCAGTG TGAACGTGCC CCTCGGGGCT CCGGTGGAGA GTCCCTATGA CACATCCCCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Characterization of a putative cis-regulatory element that controls transcriptional activity of the pig uroplakin II gene promoter. |
Hepatocyte nuclear factor-4 mediates apolipoprotein A-IV transcriptional regulation by fatty acid in newborn swine enterocytes. |
PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. |
PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. |