| Gene Symbol | CXCL12 |
| Entrez Gene ID | 494460 |
| Full Name | C-X-C motif chemokine ligand 12 |
| Synonyms | SDF-1 |
| Gene Type | protein-coding |
| Organism | Sus scrofa(Pig) |
ORF » Species Summary » Sus scrofa » CXCL12 cDNA ORF clone
| Gene Symbol | CXCL12 |
| Entrez Gene ID | 494460 |
| Full Name | C-X-C motif chemokine ligand 12 |
| Synonyms | SDF-1 |
| Gene Type | protein-coding |
| Organism | Sus scrofa(Pig) |
| mRNA | Protein | Name |
|---|---|---|
| XM_021072178.1 | XP_020927837.1 | stromal cell-derived factor 1 isoform X1 |
| XM_005671243.3 | XP_005671300.1 | stromal cell-derived factor 1 isoform X2 |
| XM_005671244.2 | XP_005671301.1 | stromal cell-derived factor 1 isoform X2 |
| NM_001009580.1 | NP_001009580.1 | stromal cell-derived factor 1 precursor |
| XM_005671244.3 | XP_005671301.1 | stromal cell-derived factor 1 isoform X3 |
| XM_005671243.2 | XP_005671300.1 | stromal cell-derived factor 1 isoform X1 |
Effects of the polymorphisms of Mx1, BAT2 and CXCL12 genes on immunological traits in pigs.
Wang SJ, Liu WJ, Sargent CA, Zhao SH, Liu HB, Liu XD, Wang C, Hua GH, Yang LG, Affara NA, Zhang SJ
Molecular biology reports39(3)2417-27(2012 Mar)
Transmyocardial drilling revascularization combined with heparinized bFGF-incorporating stent activates resident cardiac stem cells via SDF-1/CXCR4 axis.
Zhang GW, Wen T, Gu TX, Li-Ling J, Wang C, Zhao Y, Liu J, Wang Y, Liu TJ, L? F
Experimental cell research318(4)391-9(2012 Feb)
PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences.
Uenishi H, Eguchi-Ogawa T, Shinkai H, Okumura N, Suzuki K, Toki D, Hamasima N, Awata T
Nucleic acids research35(Database issue)D650-3(2007 Jan)
Comparative analysis of protein coding sequences from human, mouse and the domesticated pig.
J?rgensen FG, Hobolth A, Hornsh?j H, Bendixen C, Fredholm M, Schierup MH
BMC biology32(2005 Jan)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
Polymorphisms in CXCL12 are significantly associated with immunological traits in Landrace piglets and have potential application value for marker-assisted selection of pig breeding with disease resistance.
Title: Effects of the polymorphisms of Mx1, BAT2 and CXCL12 genes on immunological traits in pigs.
The new method has shown to be capable of promoting CSCs proliferation and differentiation into cardiomyocytes through activating the SDF-1/CXCR4 axis, while inhibiting myocardial apoptosis , thereby enhancing myocardial regeneration.
Title: Transmyocardial drilling revascularization combined with heparinized bFGF-incorporating stent activates resident cardiac stem cells via SDF-1/CXCR4 axis.
The following CXCL12 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the CXCL12 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
| CloneID | OSe28603 | |
| Clone ID Related Accession (Same CDS sequence) | NM_001009580.1 | |
| Accession Version | NM_001009580.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 351bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2019-10-21 | |
| Organism | Sus scrofa(pig) | |
| Product | stromal cell-derived factor 1 precursor | |
| Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY312066.1. ##Evidence-Data-START## Transcript exon combination :: AY312066.1, AK233811.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1487420, SAMEA1876824 [ECO:0000348] ##Evidence-Data-END## | |
1 | ATGGGTGTCA AGGTCCTCGC CGTACTGGCC CTCGTGCTGA CCGCGCTCTG CCTCAGCGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001009580.1 |
| CDS | 51..401 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001009580.1 |
1 | ATGGGTGTCA AGGTCCTCGC CGTACTGGCC CTCGTGCTGA CCGCGCTCTG CCTCAGCGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe22506 | |
| Clone ID Related Accession (Same CDS sequence) | XM_005671243.3 , XM_005671243.2 | |
| Accession Version | XM_005671243.3 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 360bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-05-12 | |
| Organism | Sus scrofa(pig) | |
| Product | stromal cell-derived factor 1 isoform X2 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010456.5) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On May 13, 2017 this sequence version replaced XM_005671243.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGGGTGTCA AGGTCCTCGC CGTGCTGGCC CTCGTGCTGA CCGCGCTCTG CCTCAGCGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_005671300.1 |
| CDS | 98..457 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_005671243.3 |
1 | ATGGGTGTCA AGGTCCTCGC CGTGCTGGCC CTCGTGCTGA CCGCGCTCTG CCTCAGCGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe22506 | |
| Clone ID Related Accession (Same CDS sequence) | XM_005671243.3 , XM_005671243.2 | |
| Accession Version | XM_005671243.2 | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 360bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2015-09-10 | |
| Organism | Sus scrofa(Pig) | |
| Product | stromal cell-derived factor 1 isoform X1 | |
| Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003612048.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 11, 2015 this sequence version replaced XM_005671243.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGGGTGTCA AGGTCCTCGC CGTGCTGGCC CTCGTGCTGA CCGCGCTCTG CCTCAGCGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_005671300.1 |
| CDS | 100..459 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_005671243.2 |
1 | ATGGGTGTCA AGGTCCTCGC CGTGCTGGCC CTCGTGCTGA CCGCGCTCTG CCTCAGCGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe22507 | |
| Clone ID Related Accession (Same CDS sequence) | XM_005671244.2 , XM_005671244.3 | |
| Accession Version | XM_005671244.2 | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 282bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2015-09-10 | |
| Organism | Sus scrofa(Pig) | |
| Product | stromal cell-derived factor 1 isoform X2 | |
| Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003612048.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 11, 2015 this sequence version replaced XM_005671244.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGGGTGTCA AGGTCCTCGC CGTGCTGGCC CTCGTGCTGA CCGCGCTCTG CCTCAGCGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_005671301.1 |
| CDS | 98..379 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_005671244.2 |
1 | ATGGGTGTCA AGGTCCTCGC CGTGCTGGCC CTCGTGCTGA CCGCGCTCTG CCTCAGCGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe22507 | |
| Clone ID Related Accession (Same CDS sequence) | XM_005671244.2 , XM_005671244.3 | |
| Accession Version | XM_005671244.3 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 282bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-05-12 | |
| Organism | Sus scrofa(pig) | |
| Product | stromal cell-derived factor 1 isoform X3 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010456.5) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On May 13, 2017 this sequence version replaced XM_005671244.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGGGTGTCA AGGTCCTCGC CGTGCTGGCC CTCGTGCTGA CCGCGCTCTG CCTCAGCGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_005671301.1 |
| CDS | 120..401 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_005671244.3 |
1 | ATGGGTGTCA AGGTCCTCGC CGTGCTGGCC CTCGTGCTGA CCGCGCTCTG CCTCAGCGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe237334 | |
| Clone ID Related Accession (Same CDS sequence) | XM_021072178.1 | |
| Accession Version | XM_021072178.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 546bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-05-12 | |
| Organism | Sus scrofa(pig) | |
| Product | stromal cell-derived factor 1 isoform X1 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010456.5) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGGGTGTCA AGGTCCTCGC CGTGCTGGCC CTCGTGCTGA CCGCGCTCTG CCTCAGCGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_020927837.1 |
| CDS | 98..643 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_021072178.1 |
1 | ATGGGTGTCA AGGTCCTCGC CGTGCTGGCC CTCGTGCTGA CCGCGCTCTG CCTCAGCGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Effects of the polymorphisms of Mx1, BAT2 and CXCL12 genes on immunological traits in pigs. |
Transmyocardial drilling revascularization combined with heparinized bFGF-incorporating stent activates resident cardiac stem cells via SDF-1/CXCR4 axis. |
PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. |
Comparative analysis of protein coding sequences from human, mouse and the domesticated pig. |