| Gene Symbol | CXCL16 |
| Entrez Gene ID | 396735 |
| Full Name | C-X-C motif chemokine ligand 16 |
| Synonyms | SR-PSOX |
| Gene Type | protein-coding |
| Organism | Sus scrofa(Pig) |
ORF » Species Summary » Sus scrofa » CXCL16 cDNA ORF clone
| Gene Symbol | CXCL16 |
| Entrez Gene ID | 396735 |
| Full Name | C-X-C motif chemokine ligand 16 |
| Synonyms | SR-PSOX |
| Gene Type | protein-coding |
| Organism | Sus scrofa(Pig) |
| mRNA | Protein | Name |
|---|---|---|
| NM_213811.1 | NP_998976.1 | C-X-C motif chemokine 16 precursor |
| XM_005669174.2 | XP_005669231.1 | C-X-C motif chemokine 16 isoform X1 |
| XM_013981276.2 | XP_013836730.1 | C-X-C motif chemokine 16 isoform X1 |
| XM_005669174.3 | XP_005669231.2 | C-X-C motif chemokine 16 isoform X2 |
| XM_013981276.1 | XP_013836730.1 | C-X-C motif chemokine 16 isoform X2 |
| XM_013981277.1 | XP_013836731.1 | C-X-C motif chemokine 16 isoform X3 |
PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries.
Uenishi H, Eguchi T, Suzuki K, Sawazaki T, Toki D, Shinkai H, Okumura N, Hamasima N, Awata T
Nucleic acids research32(Database issue)D484-8(2004 Jan)
Molecular cloning of a novel scavenger receptor for oxidized low density lipoprotein, SR-PSOX, on macrophages.
Shimaoka T, Kume N, Minami M, Hayashida K, Kataoka H, Kita T, Yonehara S
The Journal of biological chemistry275(52)40663-6(2000 Dec)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following CXCL16 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the CXCL16 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
| CloneID | OSe00112 | |
| Clone ID Related Accession (Same CDS sequence) | NM_213811.1 | |
| Accession Version | NM_213811.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 753bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2019-12-24 | |
| Organism | Sus scrofa(pig) | |
| Product | C-X-C motif chemokine 16 precursor | |
| Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AF277000.1. ##Evidence-Data-START## Transcript exon combination :: AF277000.1, BX917586.2 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1487420, SAMEA1876826 [ECO:0000348] ##Evidence-Data-END## | |
1 | ATGCCGCTCT GGGAACTCTG GTTCTTCTTG CTCGCACTCT TTCTAGCGTG GCTGACTCCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_998976.1 |
| CDS | 13..765 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_213811.1 |
1 | ATGCCGCTCT GGGAACTCTG GTTCTTCTTG CTCGCACTCT TTCTAGCGTG GCTGACTCCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe233205 | |
| Clone ID Related Accession (Same CDS sequence) | XM_005669174.3 | |
| Accession Version | XM_005669174.3 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 861bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-05-12 | |
| Organism | Sus scrofa(pig) | |
| Product | C-X-C motif chemokine 16 isoform X2 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010454.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On May 13, 2017 this sequence version replaced XM_005669174.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGGTCAGGC GGAGCGGGAG AAGGAAACGA AAGCTCCTGA GAAAGCAGCT GGACGCCAGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_005669231.2 |
| CDS | 207..1067 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_005669174.3 |
1 | ATGGTCAGGC GGAGCGGGAG AAGGAAACGA AAGCTCCTGA GAAAGCAGCT GGACGCCAGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe19354 | |
| Clone ID Related Accession (Same CDS sequence) | XM_005669174.2 | |
| Accession Version | XM_005669174.2 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1443bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2015-09-10 | |
| Organism | Sus scrofa(Pig) | |
| Product | C-X-C motif chemokine 16 isoform X1 | |
| Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003611552.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 11, 2015 this sequence version replaced XM_005669174.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGAGGGTTA AGGCTGAGTC GTCAGGAGGG AGATGGTATT TGAGGCTCAA ATCCTCAAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_005669231.1 |
| CDS | 88..1530 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_005669174.2 |
1 | ATGAGGGTTA AGGCTGAGTC GTCAGGAGGG AGATGGTATT TGAGGCTCAA ATCCTCAAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe41410 | |
| Clone ID Related Accession (Same CDS sequence) | XM_013981276.2 , XM_013981276.1 | |
| Accession Version | XM_013981276.2 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1245bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-05-12 | |
| Organism | Sus scrofa(pig) | |
| Product | C-X-C motif chemokine 16 isoform X1 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010454.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On May 13, 2017 this sequence version replaced XM_013981276.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGAGGGTTA AGGCTGAGTC GTCAGGAGGG AGATGGTATT TGAGGCTCAA ATCCTCAAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_013836730.1 |
| CDS | 111..1355 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_013981276.2 |
1 | ATGAGGGTTA AGGCTGAGTC GTCAGGAGGG AGATGGTATT TGAGGCTCAA ATCCTCAAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe41410 | |
| Clone ID Related Accession (Same CDS sequence) | XM_013981276.2 , XM_013981276.1 | |
| Accession Version | XM_013981276.1 | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1245bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2015-09-10 | |
| Organism | Sus scrofa(Pig) | |
| Product | C-X-C motif chemokine 16 isoform X2 | |
| Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003611552.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGAGGGTTA AGGCTGAGTC GTCAGGAGGG AGATGGTATT TGAGGCTCAA ATCCTCAAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_013836730.1 |
| CDS | 79..1323 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_013981276.1 |
1 | ATGAGGGTTA AGGCTGAGTC GTCAGGAGGG AGATGGTATT TGAGGCTCAA ATCCTCAAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe41411 | |
| Clone ID Related Accession (Same CDS sequence) | XM_013981277.1 | |
| Accession Version | XM_013981277.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1167bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2015-09-10 | |
| Organism | Sus scrofa(Pig) | |
| Product | C-X-C motif chemokine 16 isoform X3 | |
| Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003611552.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGGTAAATA CCTCGGGTTG GGGCGTGACG TCAGGGCGCC CGAGCCCCCA GCCCAGTCCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_013836731.1 |
| CDS | 16..1182 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_013981277.1 |
1 | ATGGTAAATA CCTCGGGTTG GGGCGTGACG TCAGGGCGCC CGAGCCCCCA GCCCAGTCCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. |
Molecular cloning of a novel scavenger receptor for oxidized low density lipoprotein, SR-PSOX, on macrophages. |