| Gene Symbol | LOC543842 |
| Entrez Gene ID | 543842 |
| Full Name | TAGL11 transcription factor |
| Gene Type | protein-coding |
| Organism | Solanum lycopersicum(Lycopersicon esculentum) |
ORF » Species Summary » Solanum lycopersicum » LOC543842 cDNA ORF clone
| Gene Symbol | LOC543842 |
| Entrez Gene ID | 543842 |
| Full Name | TAGL11 transcription factor |
| Gene Type | protein-coding |
| Organism | Solanum lycopersicum(Lycopersicon esculentum) |
| mRNA | Protein | Name |
|---|---|---|
| NM_001247265.2 | NP_001234194.1 | agamous-like MADS-box protein AGL11 |
| XM_010314673.2 | XP_010312975.1 | TAGL11 transcription factor isoform X1 |
| XM_010314673.3 | XP_010312975.1 | TAGL11 transcription factor isoform X1 |
Overexpression of the class D MADS-box gene Sl-AGL11 impacts fleshy tissue differentiation and structure in tomato fruits.
Huang B, Routaboul JM, Liu M, Deng W, Maza E, Mila I, Hu G, Zouine M, Frasse P, Vrebalov JT, Giovannoni JJ, Li Z, van der Rest B, Bouzayen M
Journal of experimental botany68(17)4869-4884(2017 10)
Coffee and tomato share common gene repertoires as revealed by deep sequencing of seed and cherry transcripts.
Lin C, Mueller LA, Mc Carthy J, Crouzillat D, P?tiard V, Tanksley SD
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik112(1)114-30(2005 Dec)
MADS-box genes expressed during tomato seed and fruit development.
Busi MV, Bustamante C, D'Angelo C, Hidalgo-Cuevas M, Boggio SB, Valle EM, Zabaleta E
Plant molecular biology52(4)801-15(2003 Jul)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LOC543842 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC543842 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
| CloneID | OSo108247 | |
| Clone ID Related Accession (Same CDS sequence) | NM_001247265.2 | |
| Accession Version | NM_001247265.2 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 672bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2019-02-12 | |
| Organism | Solanum lycopersicum(Lycopersicon esculentum) | |
| Product | agamous-like MADS-box protein AGL11 | |
| Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from GO374889.1 and AY098736.2. On Sep 17, 2015 this sequence version replaced NM_001247265.1. ##Evidence-Data-START## Transcript exon combination :: GO374889.1, AY098736.2 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN06134382, SAMN06134383 [ECO:0000348] ##Evidence-Data-END## | |
1 | ATGGGTCGAG GAAAGATAGA GATAAAGAGG ATTGAAAACA ACACAAATCG ACAGGTAACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001234194.1 |
| CDS | 86..757 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001247265.2 |
1 | ATGGGTCGAG GAAAGATAGA GATAAAGAGG ATTGAAAACA ACACAAATCG ACAGGTAACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSo103178 | |
| Clone ID Related Accession (Same CDS sequence) | XM_010314673.2 , XM_010314673.3 | |
| Accession Version | XM_010314673.2 | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 597bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2016-11-21 | |
| Organism | Solanum lycopersicum(Lycopersicon esculentum) | |
| Product | TAGL11 transcription factor isoform X1 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_015448.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Nov 22, 2016 this sequence version replaced XM_010314673.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Solanum lycopersicum Annotation Release 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGGGTCGAG GAAAGATAGA GATAAAGAGG ATTGAAAACA ACACAAATCG ACAGGTAACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_010312975.1 |
| CDS | 127..723 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_010314673.2 |
1 | ATGGGTCGAG GAAAGATAGA GATAAAGAGG ATTGAAAACA ACACAAATCG ACAGGTAACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSo103178 | |
| Clone ID Related Accession (Same CDS sequence) | XM_010314673.2 , XM_010314673.3 | |
| Accession Version | XM_010314673.3 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 597bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2018-08-07 | |
| Organism | Solanum lycopersicum(Lycopersicon esculentum) | |
| Product | TAGL11 transcription factor isoform X1 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_015448.3) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2018 this sequence version replaced XM_010314673.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Solanum lycopersicum Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGGGTCGAG GAAAGATAGA GATAAAGAGG ATTGAAAACA ACACAAATCG ACAGGTAACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_010312975.1 |
| CDS | 137..733 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_010314673.3 |
1 | ATGGGTCGAG GAAAGATAGA GATAAAGAGG ATTGAAAACA ACACAAATCG ACAGGTAACA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Overexpression of the class D MADS-box gene Sl-AGL11 impacts fleshy tissue differentiation and structure in tomato fruits. |
Coffee and tomato share common gene repertoires as revealed by deep sequencing of seed and cherry transcripts. |
MADS-box genes expressed during tomato seed and fruit development. |