Pcdha9 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene
Clones
gRNAs

Summary

Gene Symbol	Pcdha9
Entrez Gene ID	393090
Full Name	protocadherin alpha 9
Synonyms	rCNRv09
General protein information	Preferred Names protocadherin alpha 9 Names protocadherin alpha-9 cadherin-related neuronal receptor 9
Gene Type	protein-coding
Organism	Rattus norvegicus(Norway rat)
Genome	Chromosome: 18 Map Location: 18p11
Summary	synaptic cadherin [RGD, Feb 2006].

mRNA and Protein(s)

mRNA	Protein	Name
NM_199508.1	NP_955802.1	protocadherin alpha-9 precursor

Pathways from BioSystems

Homologies

Mus musculus (house mouse)	Pcdha8	NP_957695.1
Homo sapiens (human)	PCDHA9	NP_114063.1
Pan troglodytes (chimpanzee)	PCDHA9	NP_001076056.1
Rattus norvegicus (Norway rat)	Pcdha9	NP_955802.1

Gene Ontology
Bibliography

Related articles in PubMed

Sequence analysis and expression mapping of the rat clustered protocadherin gene repertoires.
Zou C, Huang W, Ying G, Wu Q
Neuroscience144(2)579-603(2007 Jan)

Comparative genomics and diversifying selection of the clustered vertebrate protocadherin genes.
Wu Q
Genetics169(4)2179-88(2005 Apr)

Interaction with protocadherin-gamma regulates the cell surface expression of protocadherin-alpha.
Murata Y, Hamada S, Morishita H, Mutoh T, Yagi T
The Journal of biological chemistry279(47)49508-16(2004 Nov)

Genomic sequence and organization of the family of CNR/Pcdhalpha genes in rat.
Yanase H, Sugino H, Yagi T
Genomics83(4)717-26(2004 Apr)

Multiple variable first exons: a mechanism for cell- and tissue-specific gene regulation.
Zhang T, Haws P, Wu Q
Genome research14(1)79-89(2004 Jan)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following Pcdha9 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Pcdha9 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ORa05410	NM_199508.1 Latest version!	Rattus norvegicus protocadherin alpha 9 (Pcdha9), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	12-14	$559.30 $799.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Pcdha9 ( NM_199508.1 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> NP_955802.1 Rattus norvegicus protocadherin alpha 9 (Pcdha9), mRNA.

Price & Availability↑

CloneID	ORa05410
Clone ID Related Accession (Same CDS sequence)	NM_199508.1
Accession Version	NM_199508.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2841bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-10-01
Organism	Rattus norvegicus(Norway rat)
Product	protocadherin alpha-9 precursor
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY573983.1. ##Evidence-Data-START## Transcript exon combination :: AY573983.1, AB113392.1 [ECO:0000332] ##Evidence-Data-END##

ATGCTGTGTT TAGGCGGTGC ACTCCCAGAG GGACGGTTTC TAGTGCTTTC GCTTCTGCTC 
CTCGCAGTTT GGGAGGTGGG GAGCGGACAG CTCCGCTACT CTATACCGGA GGAAACCAAA 
CACGGCACCT TCGTGGGCCG CATCGCACAG GACCTGGAAC TGCAGCTGCC GGAGCTGGTT 
CCTGGTCTTT TCCAGTTGGA CTCAAAGGGT TTTGGGGACC TTCTGGAGGT AAATCTGCAG 
AATGGCATTT TGTTTGTGAA TTCTCGGATC GATCGGGAGG AGCTGTGCGG GAGGAGCGCG 
GAGTGCAACA TCCACCTGGA GGTGATCGTG GACAGGCCGC TGCAGGTTTT CCACGTCGAG 
GTAGAGGTGA GGGACATTAA TGACAACCCT CCCACGTTTC CAGCGACACA GAAGACTCTG 
TTTATTCCGG AGTCCAGACT GCTTGACTCG CGGTTTCCAC TAGAGGGCGC GTCAGATGCA 
GATGTCGGTT CCAATGCCCT GCTGACTTAC AGACTGAGCA CCAATGAACA TTTCTCTCTG 
GATGTACCGC CCAACCACGA GCAGGTGAAA CCTCTTGGGC TCGTTTTGCG GAAACCTTTA 
GACAGAGAAG AAGCTGCAGA GATGCGCTTA TTGCTCACGG CTACGGACGG AGGCAAACCG 
GAGTTGACCG GCACCGTTCA GTTACTCATC ACAGTGCTGG ATGTCAATGA CAACGCTCCA 
GCTTTTGACA GATCTCTGTA TACCGTGAAA TTACCAGAAA ACGTTCCAAA CGGGACATTA 
GTAATCAAAG TCAATGCCTC AGATTTGGAC GAAGGCGTCA ATGGGGAAGT TATGTACTCA 
TTTTCTAGTG ATGTTTCTTC AGATATAAAA TCCAAGTTTC ACGTGGATGC TGTGAGTGGC 
GAGATTACAG CTATCGGAAT TATTGATTTT GAAGAGTGCA AAGCTTACAA GATTCCATTA 
GAGGCACGTG ATAAGGGCTT CCCACCACTG ATTGGTCACT GTACTGTTCT TGTGGAAGTT 
GTCGATGCTA ATGACAATGC CCCACAGCTC AATGTCAAAA CACTCTGGCT CCCTGTTAAA 
GAAGATGCGC AGCTGGGGAA AATTATTGCC CTGATCAGTG TGATTGATCT AGACTCAGGT 
GCCAACGGGC AGGTTACCTG CTCCTTGGCT AATCACGTCC CCTTCAAGCT GGTGTCCACC 
TTCAAGAATT ACTATTCGCT TGTGCTGGAC AGCGCCCTGG ACCGAGAGAC CACAGCTGAC 
TATCAGGTGG TGGTGACTGC GCAGGACGGG GGTTCTCCCT CGCTGCGGGC CACGGCCACC 
GTTTCTGTGG AGGTGGCTGA TGTGAACGAC AATGCGCCCC TGTTTGCTCA GCCTGAATAC 
ACAGTGTTTG TGAAGGAGAA CAATCCACCA GGTACGCATA TCTTCACGGT GTCTGCGGTG 
GATGCAGATG CACAAGAGAA TGCGCTGGTG TCCTACTCGC TGGTGGAGCG GAGGGTGGGC 
GAGCGCTTGC TGTCGAGCTA TGTGTCTGTG CATGCGGAGA GCGGCAAGGT GTTCGCGCTG 
CAGCCTCTGG ACCATGAAGA GCTGGAGCTG CTGCAGTTCC AGGTGAGCGC GCGGGATGCT 
GGTGTGCCTG CCCTGGGCAG CAATGTGACT CTGCAGGTGT TTGTGCTGGA TGAGAACGAC 
AACATGCCGA CGTTGCTTGG ATCTGGGACG GGTGGTTCAG ATGGAGTGTT CAATCATTTG 
TTGCCTAGGT CGGTGGATCC TGGTCACGTG GTGGCGAAGG TGCGCGCAGT AGATGCAGAC 
TCTGGTTACA ATGCTTGGCT GTCTTACGAG CTGCTCTCAT TGCCAGGGAG CATGCGCAGC 
CCATTCCGTG TAGGACTATA CACCGGTGAG ATCAGCACCA CAAGGTCCTT GGACGAAACA 
GATGGGACTA GACAACGTCT GCTGCTGCTG GTGAAGGACC ACGGTGAACC TCAGCTGACT 
GCCACAGTCA CCATGCTGGT GTCTTTAGTG GAAAGTGGCC AGGCCCCAAA GGCCTCGTCC 
CGGTCCTCTG TGGGTGTTAG TGTACCAGAG TCATCGTTAG TGAATGTCAA CGTGTACCTG 
ATCATTGCCA TTTGCGCAGT GTCCAGTCTA TTGGTGCTTA CGCTGCTGTT GTACACTGCG 
CTCCGCTGCT CGGCGATGCC CACTGGGGGC GCTTGTGGGT CTGGGAAGCC CATGCTGGTG 
TGCTCCAGCG CGGTGGGTAC CTGGTCTTAC TCGCAGCAGA GACAGCAGAG GGTATGCTCT 
GGAGAGGGCC TACCGAAGAC CGACCTAATG GCCTTCAGCC CCGGTCTACC TCCATGTCCT 
GGATCTGCAG AACCATCTGT TTCTTTGGAC TCCTCTGAGA AGCCCCGACA GCCCAACCCT 
GACTGGCGCT ACTCTGCCTC GCTAAGAGCC GGCATGCACA GCTCTGTGCA CCTGGAGGAG 
GCTGGCATTC TACGGGCTGG TCCAGGAGGG CCTGATCAAC AGTGGCCAAC AGTATCCAGT 
GCAACACCAG AACCAGAGGC AGGAGAGGTG TCCCCTCCAG TGGGCGCTGG TGTCAACAGC 
AACAGCTGGA CCTTTAAATA CGGACCCGGC AACCCCAAAC AGCCCGGTCC CGGTGAGTTG 
CCAGACAAAT TCATTATCCC AGGATCTCCT GCAATCATCT CCATCCGGCA GGAGTCTGCT 
AACAACCAAA TTGACAAAAG CGATTTTATA ACCTTCGGCA AAAAGGAGGA GACCAAGAAA 
AAGAAGAAAA AGAAGAAGGG TAACAAGACC CAGGAGAAAA AAGAGAAAGG GAACAGCACG 
ACGGACAACA GTGACCAGTG A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_955802.1
CDS	1..2841
Translation	MLCLGGALPEGRFLVLSLLLLAVWEVGSGQLRYSIPEETKHGTFVGRIAQDLELQLPELVPGLFQLDSKGFGDLLEVNLQNGILFVNSRIDREELCGRSAECNIHLEVIVDRPLQVFHVEVEVRDINDNPPTFPATQKTLFIPESRLLDSRFPLEGASDADVGSNALLTYRLSTNEHFSLDVPPNHEQVKPLGLVLRKPLDREEAAEMRLLLTATDGGKPELTGTVQLLITVLDVNDNAPAFDRSLYTVKLPENVPNGTLVIKVNASDLDEGVNGEVMYSFSSDVSSDIKSKFHVDAVSGEITAIGIIDFEECKAYKIPLEARDKGFPPLIGHCTVLVEVVDANDNAPQLNVKTLWLPVKEDAQLGKIIALISVIDLDSGANGQVTCSLANHVPFKLVSTFKNYYSLVLDSALDRETTADYQVVVTAQDGGSPSLRATATVSVEVADVNDNAPLFAQPEYTVFVKENNPPGTHIFTVSAVDADAQENALVSYSLVERRVGERLLSSYVSVHAESGKVFALQPLDHEELELLQFQVSARDAGVPALGSNVTLQVFVLDENDNMPTLLGSGTGGSDGVFNHLLPRSVDPGHVVAKVRAVDADSGYNAWLSYELLSLPGSMRSPFRVGLYTGEISTTRSLDETDGTRQRLLLLVKDHGEPQLTATVTMLVSLVESGQAPKASSRSSVGVSVPESSLVNVNVYLIIAICAVSSLLVLTLLLYTALRCSAMPTGGACGSGKPMLVCSSAVGTWSYSQQRQQRVCSGEGLPKTDLMAFSPGLPPCPGSAEPSVSLDSSEKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQPGPGELPDKFIIPGSPAIISIRQESANNQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ

Target ORF information:

RefSeq Version	NM_199508.1
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus protocadherin alpha 9 (Pcdha9), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_199508.1

ORF Insert Sequence:

ATGCTGTGTT TAGGCGGTGC ACTCCCAGAG GGACGGTTTC TAGTGCTTTC GCTTCTGCTC 
CTCGCAGTTT GGGAGGTGGG GAGCGGACAG CTCCGCTACT CTATACCGGA GGAAACCAAA 
CACGGCACCT TCGTGGGCCG CATCGCACAG GACCTGGAAC TGCAGCTGCC GGAGCTGGTT 
CCTGGTCTTT TCCAGTTGGA CTCAAAGGGT TTTGGGGACC TTCTGGAGGT AAATCTGCAG 
AATGGCATTT TGTTTGTGAA TTCTCGGATC GATCGGGAGG AGCTGTGCGG GAGGAGCGCG 
GAGTGCAACA TCCACCTGGA GGTGATCGTG GACAGGCCGC TGCAGGTTTT CCACGTCGAG 
GTAGAGGTGA GGGACATTAA TGACAACCCT CCCACGTTTC CAGCGACACA GAAGACTCTG 
TTTATTCCGG AGTCCAGACT GCTTGACTCG CGGTTTCCAC TAGAGGGCGC GTCAGATGCA 
GATGTCGGTT CCAATGCCCT GCTGACTTAC AGACTGAGCA CCAATGAACA TTTCTCTCTG 
GATGTACCGC CCAACCACGA GCAGGTGAAA CCTCTTGGGC TCGTTTTGCG GAAACCTTTA 
GACAGAGAAG AAGCTGCAGA GATGCGCTTA TTGCTCACGG CTACGGACGG AGGCAAACCG 
GAGTTGACCG GCACCGTTCA GTTACTCATC ACAGTGCTGG ATGTCAATGA CAACGCTCCA 
GCTTTTGACA GATCTCTGTA TACCGTGAAA TTACCAGAAA ACGTTCCAAA CGGGACATTA 
GTAATCAAAG TCAATGCCTC AGATTTGGAC GAAGGCGTCA ATGGGGAAGT TATGTACTCA 
TTTTCTAGTG ATGTTTCTTC AGATATAAAA TCCAAGTTTC ACGTGGATGC TGTGAGTGGC 
GAGATTACAG CTATCGGAAT TATTGATTTT GAAGAGTGCA AAGCTTACAA GATTCCATTA 
GAGGCACGTG ATAAGGGCTT CCCACCACTG ATTGGTCACT GTACTGTTCT TGTGGAAGTT 
GTCGATGCTA ATGACAATGC CCCACAGCTC AATGTCAAAA CACTCTGGCT CCCTGTTAAA 
GAAGATGCGC AGCTGGGGAA AATTATTGCC CTGATCAGTG TGATTGATCT AGACTCAGGT 
GCCAACGGGC AGGTTACCTG CTCCTTGGCT AATCACGTCC CCTTCAAGCT GGTGTCCACC 
TTCAAGAATT ACTATTCGCT TGTGCTGGAC AGCGCCCTGG ACCGAGAGAC CACAGCTGAC 
TATCAGGTGG TGGTGACTGC GCAGGACGGG GGTTCTCCCT CGCTGCGGGC CACGGCCACC 
GTTTCTGTGG AGGTGGCTGA TGTGAACGAC AATGCGCCCC TGTTTGCTCA GCCTGAATAC 
ACAGTGTTTG TGAAGGAGAA CAATCCACCA GGTACGCATA TCTTCACGGT GTCTGCGGTG 
GATGCAGATG CACAAGAGAA TGCGCTGGTG TCCTACTCGC TGGTGGAGCG GAGGGTGGGC 
GAGCGCTTGC TGTCGAGCTA TGTGTCTGTG CATGCGGAGA GCGGCAAGGT GTTCGCGCTG 
CAGCCTCTGG ACCATGAAGA GCTGGAGCTG CTGCAGTTCC AGGTGAGCGC GCGGGATGCT 
GGTGTGCCTG CCCTGGGCAG CAATGTGACT CTGCAGGTGT TTGTGCTGGA TGAGAACGAC 
AACATGCCGA CGTTGCTTGG ATCTGGGACG GGTGGTTCAG ATGGAGTGTT CAATCATTTG 
TTGCCTAGGT CGGTGGATCC TGGTCACGTG GTGGCGAAGG TGCGCGCAGT AGATGCAGAC 
TCTGGTTACA ATGCTTGGCT GTCTTACGAG CTGCTCTCAT TGCCAGGGAG CATGCGCAGC 
CCATTCCGTG TAGGACTATA CACCGGTGAG ATCAGCACCA CAAGGTCCTT GGACGAAACA 
GATGGGACTA GACAACGTCT GCTGCTGCTG GTGAAGGACC ACGGTGAACC TCAGCTGACT 
GCCACAGTCA CCATGCTGGT GTCTTTAGTG GAAAGTGGCC AGGCCCCAAA GGCCTCGTCC 
CGGTCCTCTG TGGGTGTTAG TGTACCAGAG TCATCGTTAG TGAATGTCAA CGTGTACCTG 
ATCATTGCCA TTTGCGCAGT GTCCAGTCTA TTGGTGCTTA CGCTGCTGTT GTACACTGCG 
CTCCGCTGCT CGGCGATGCC CACTGGGGGC GCTTGTGGGT CTGGGAAGCC CATGCTGGTG 
TGCTCCAGCG CGGTGGGTAC CTGGTCTTAC TCGCAGCAGA GACAGCAGAG GGTATGCTCT 
GGAGAGGGCC TACCGAAGAC CGACCTAATG GCCTTCAGCC CCGGTCTACC TCCATGTCCT 
GGATCTGCAG AACCATCTGT TTCTTTGGAC TCCTCTGAGA AGCCCCGACA GCCCAACCCT 
GACTGGCGCT ACTCTGCCTC GCTAAGAGCC GGCATGCACA GCTCTGTGCA CCTGGAGGAG 
GCTGGCATTC TACGGGCTGG TCCAGGAGGG CCTGATCAAC AGTGGCCAAC AGTATCCAGT 
GCAACACCAG AACCAGAGGC AGGAGAGGTG TCCCCTCCAG TGGGCGCTGG TGTCAACAGC 
AACAGCTGGA CCTTTAAATA CGGACCCGGC AACCCCAAAC AGCCCGGTCC CGGTGAGTTG 
CCAGACAAAT TCATTATCCC AGGATCTCCT GCAATCATCT CCATCCGGCA GGAGTCTGCT 
AACAACCAAA TTGACAAAAG CGATTTTATA ACCTTCGGCA AAAAGGAGGA GACCAAGAAA 
AAGAAGAAAA AGAAGAAGGG TAACAAGACC CAGGAGAAAA AAGAGAAAGG GAACAGCACG 
ACGGACAACA GTGACCAGTG A