Pcdhga11 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene
Clones
gRNAs

Summary

Gene Symbol	Pcdhga11
Entrez Gene ID	252897
Full Name	protocadherin gamma subfamily A, 11
General protein information	Preferred Names protocadherin gamma subfamily A, 11 Names protocadherin gamma-A11
Gene Type	protein-coding
Organism	Rattus norvegicus(Norway rat)
Genome	Chromosome: 18 Map Location: 18p11
Summary	may play a role in cell-cell adhesion during spermatogenesis [RGD, Feb 2006].

mRNA and Protein(s)

mRNA	Protein	Name
NM_001037153.1	NP_001032230.1	protocadherin gamma-A11

Pathways from BioSystems

Homologies

Homo sapiens (human)	PCDHGA11	NP_061737.1
Bos taurus (cattle)	PCDHGA11	XP_005209580.1
Canis lupus familiaris (dog)	PCDHGA11	XP_849553.3
Pan troglodytes (chimpanzee)	PCDHGA11	NP_001076028.1
Mus musculus (house mouse)	Pcdhga11	NP_291072.1
Rattus norvegicus (Norway rat)	Pcdhga11	NP_001032230.1

Gene Ontology
Bibliography

Related articles in PubMed

Sequence analysis and expression mapping of the rat clustered protocadherin gene repertoires.
Zou C, Huang W, Ying G, Wu Q
Neuroscience144(2)579-603(2007 Jan)

Comparative genomics and diversifying selection of the clustered vertebrate protocadherin genes.
Wu Q
Genetics169(4)2179-88(2005 Apr)

Interaction with protocadherin-gamma regulates the cell surface expression of protocadherin-alpha.
Murata Y, Hamada S, Morishita H, Mutoh T, Yagi T
The Journal of biological chemistry279(47)49508-16(2004 Nov)

Multiple variable first exons: a mechanism for cell- and tissue-specific gene regulation.
Zhang T, Haws P, Wu Q
Genome research14(1)79-89(2004 Jan)

Multiple cadherin superfamily members with unique expression profiles are produced in rat testis.
Johnson KJ, Patel SR, Boekelheide K
Endocrinology141(2)675-83(2000 Feb)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following Pcdhga11 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Pcdhga11 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ORa42151	NM_001037153.1 Latest version!	Rattus norvegicus protocadherin gamma subfamily A, 11 (Pcdhga11), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	12-14	$475.30 $679.00

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Pcdhga11 ( NM_001037153.1 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> NP_001032230.1 Rattus norvegicus protocadherin gamma subfamily A, 11 (Pcdhga11), mRNA.

Price & Availability↑

CloneID	ORa42151
Clone ID Related Accession (Same CDS sequence)	NM_001037153.1
Accession Version	NM_001037153.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2802bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2018-05-27
Organism	Rattus norvegicus(Norway rat)
Product	protocadherin gamma-A11
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY574010.1. On Mar 16, 2006 this sequence version replaced XM_344671.2. ##Evidence-Data-START## Transcript exon combination :: AY574010.1, FQ099131.1 [ECO:0000332] ##Evidence-Data-END##

ATGGCGAATC AGCTTCAGCG CCTGGACCGC CGCGCGCTGG TCCCGCTGTG CATTTTCCTG 
GGGACCTTGC TGACCTTTGG GACAGGACAA ATCCGATATT CGGTTCCAGA AGAGACAGAT 
AAAGGCTTCT TCGTAGGCAA CATCTCCAAA GACCTGGGGC TGGAGCCCTG GGAGGTCGCG 
GACCGCGGAG TCCGCATCGT CTCCAGAGGA AAATCGCAGC TTTTCTCTCT GAATCCGCGA 
GGCGGCAGCT TGGTGACTGC GGGTAGGATC GATCGTGAAG AGCTATGTGA TACGGTGCCC 
TCCTGCTTGC TGAATTTGGA AATTCTCGTG GAGGAAACCC TGAAGATTTA TGGAGTGGAG 
GTGGAAGTAA TGGACATTAA TGATAACGCC CCCAGCTTCC GGGAAGAAGA GGTAGAGATC 
AAAGTCAGCG AGCACACTAG TCCTGGGTCG CGATTTCCAC TTCCTAAGGC TAGGGATCCA 
GATGCAGGGA TGAACTCCCT CCAGAGCTAC CAGCTCAGCC CAAGCAGTTA TTTTTCCTTG 
CAGGTGAGAG GCGGGACTGA TGGGGACAAG AATCCAGAGC TAGTGCTGGA GGAGAGCCTG 
GACCGGGAGA AAGAGGCATC CCACCACCTC CTCCTCACAG CCTTGGATGG GGGAGATCCC 
ATCCGCACGG GGATGGTTCC CATCCGCGTG GTGGTCCTCG ACGTAAATGA CCACATTCCA 
AAATTTACAC AGTCTGTGTA TAGAGCGAGT GTGCCTGAAA ACCTCAGCTC CGGAACGCGG 
GTGCTCGTGG TAAATGCCAC AGACCCAGAT GAGGGTATCA ACGGGGAAGT GATGTACACT 
TTCCGGAAAA TGAAAAGCAA AGCTTCTGAA ATATTTCAAC TGAATTCTCA AACTGGAGAA 
GTTCTAGTCG GAAAGCCGCT GGATTTTGAA AAATATAGAT TCTATGAGAT GGAAATTCAA 
GGCCAAGATG GTGGGGGGTT GTTGAGCACC ACCATGTTGC TGATCACGGT TGAAGATGTG 
AATGACAACG TTCCAGAGAT AACTGTCACC TCTTCCATCA ACTCAGTGCC GGAAAATTCT 
CCTTCGGGTA CAGTAATTGC TCTTCTAAAC GTTCAGGATC AAGATTCTGG AGAAAATGGT 
CAGGTCTCTT GCTTCATTCC TAGTGGTCTT CCTTTTAAGT TAGAGAAAAC CTATGGAAAT 
TATTATAAAT TGGTAACCGA TAGTGAACTG GACCGGGAGC AGGTAGAGAG CTACAATATT 
ACACTGATCG CCAAAGATCA GGGAAGTCCA CCCTTGTCTA CAGCAACTCA CCTCCTGCTC 
AAAGTGGCAG ATGCCAATGA CAATCCTCCA GTTTTCACTC ACTCGTCTTA CTCGGCCTAC 
ATTCCTGAAA ACAACCCTAG AGGTTCCTCC ATCTTCTCAG TGACCGCCAT TGATAGGGAC 
AGCAGAGAAA ATGCCCAGGT CACGTACTCT CTGGCTGAGT ACAGTATCCA GGGATCACCT 
CTGTCCTCTT ACGTTTCTAT CAACTCAGAC ACCGGTGTGC TGTATGCCTT GCAATCCTTC 
GACTATGAGC AGTTCCAGAC CCTACAACTG GGAGTGACCG CTAGTGACAG TGGGAACCCA 
CCATTAAGCA GCAATATTTC ACTGACCCTT TTCGTGCTGG ACCAGAATGA CAACACTCCA 
GAGATCCTAT ACCCCTCTCT CCCTACTGAT GGCTCCACTG GTGTGGAATT GGCGCCTCGC 
TCCGCAGAGC CAGGTTATTT AGTGACCAAG GTGGTGGCTG TAGACAGAGA CTCCGGGCAG 
AACGCTTGGC TGTCCTACCG CCTGCTCAAA GCCAGCGAGC CAGGCCTCTT CTCCGTGGGG 
CTGCACACGG GGGAGGTGCG CACGGCCCGA GCCATGATGG ATAAAGATGC TCTCAAGCAG 
AGCCTCGTTG TAACTGTGCA GGATCACGGC CAGCCTCCTC TCTCCGCCAC TGTCAGGCTC 
ACCGTGGCGG TGGCTGACAG CATTCCAGAG GTTCTGGAGG ACTTGGTTAG TCTAGAGTCT 
CCTGCCAACC GGGATGAGTC GAGTCTCACC CTCTACCTAG TGGTGGCCAT CACTGCAGTC 
TCCTGCATCT TCCTCATCTT TGTCATGGTA CTGCTGGCTC TCAGGCTTCG GCGCTGGCAC 
TCATCACGTC TGCTCCAGGC TGCCAGCGGA TTGGCTGGCG TGCCTCCTTC GCACTTTGTG 
GGTGTGGACG GGATGCATGC TTTCCTCCAG ACCTATTCCC ACGAAGTTTC GCTCACTGCA 
GACTCAAGGA AGAGTCACCT GATCTTCCCG CAGCCCAACT ATGCAGACAC GCTCATCAGC 
CAGGAGAGCT GTGGGAAAAG CGAGCCTCTA CTAATACCTG AAGACTCAGC TACAGTTTTA 
GGCAAATGTG AGCCAACCGA TATTCAGCAA GCCCCGCCCA ACACTGACTG GCGTTTCTCT 
CAAGCCCAGA GACCCGGCAC GAGCGGATCC CAAAATGGGG ATGAAACCGG CACCTGGCCC 
AACAACCAGT TCGATACAGA GATGCTGCAA GCCATGATCT TGGCCTCTGC CAGTGAAGCC 
GCTGATGGGA GCTCCACTCT GGGAGGGGGC ACTGGCACTA TGGGTTTGAG CGCTCGATAT 
GGACCCCAGT TTACCCTGCA GCACGTGCCT GACTACCGCC AGAACGTGTA CATCCCTGGC 
AGCAATGCCA CACTGACCAA CGCAGCTGGC AAACGAGATG GCAAGGCTCC GGCAGGCGGC 
AATGGCAACA AGAAGAAGTC GGGCAAGAAA GAGAAGAAGT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001032230.1
CDS	135..2936
Translation	MANQLQRLDRRALVPLCIFLGTLLTFGTGQIRYSVPEETDKGFFVGNISKDLGLEPWEVADRGVRIVSRGKSQLFSLNPRGGSLVTAGRIDREELCDTVPSCLLNLEILVEETLKIYGVEVEVMDINDNAPSFREEEVEIKVSEHTSPGSRFPLPKARDPDAGMNSLQSYQLSPSSYFSLQVRGGTDGDKNPELVLEESLDREKEASHHLLLTALDGGDPIRTGMVPIRVVVLDVNDHIPKFTQSVYRASVPENLSSGTRVLVVNATDPDEGINGEVMYTFRKMKSKASEIFQLNSQTGEVLVGKPLDFEKYRFYEMEIQGQDGGGLLSTTMLLITVEDVNDNVPEITVTSSINSVPENSPSGTVIALLNVQDQDSGENGQVSCFIPSGLPFKLEKTYGNYYKLVTDSELDREQVESYNITLIAKDQGSPPLSTATHLLLKVADANDNPPVFTHSSYSAYIPENNPRGSSIFSVTAIDRDSRENAQVTYSLAEYSIQGSPLSSYVSINSDTGVLYALQSFDYEQFQTLQLGVTASDSGNPPLSSNISLTLFVLDQNDNTPEILYPSLPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTARAMMDKDALKQSLVVTVQDHGQPPLSATVRLTVAVADSIPEVLEDLVSLESPANRDESSLTLYLVVAITAVSCIFLIFVMVLLALRLRRWHSSRLLQAASGLAGVPPSHFVGVDGMHAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCGKSEPLLIPEDSATVLGKCEPTDIQQAPPNTDWRFSQAQRPGTSGSQNGDETGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGTGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK

Target ORF information:

RefSeq Version	NM_001037153.1
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus protocadherin gamma subfamily A, 11 (Pcdhga11), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001037153.1

ORF Insert Sequence:

ATGGCGAATC AGCTTCAGCG CCTGGACCGC CGCGCGCTGG TCCCGCTGTG CATTTTCCTG 
GGGACCTTGC TGACCTTTGG GACAGGACAA ATCCGATATT CGGTTCCAGA AGAGACAGAT 
AAAGGCTTCT TCGTAGGCAA CATCTCCAAA GACCTGGGGC TGGAGCCCTG GGAGGTCGCG 
GACCGCGGAG TCCGCATCGT CTCCAGAGGA AAATCGCAGC TTTTCTCTCT GAATCCGCGA 
GGCGGCAGCT TGGTGACTGC GGGTAGGATC GATCGTGAAG AGCTATGTGA TACGGTGCCC 
TCCTGCTTGC TGAATTTGGA AATTCTCGTG GAGGAAACCC TGAAGATTTA TGGAGTGGAG 
GTGGAAGTAA TGGACATTAA TGATAACGCC CCCAGCTTCC GGGAAGAAGA GGTAGAGATC 
AAAGTCAGCG AGCACACTAG TCCTGGGTCG CGATTTCCAC TTCCTAAGGC TAGGGATCCA 
GATGCAGGGA TGAACTCCCT CCAGAGCTAC CAGCTCAGCC CAAGCAGTTA TTTTTCCTTG 
CAGGTGAGAG GCGGGACTGA TGGGGACAAG AATCCAGAGC TAGTGCTGGA GGAGAGCCTG 
GACCGGGAGA AAGAGGCATC CCACCACCTC CTCCTCACAG CCTTGGATGG GGGAGATCCC 
ATCCGCACGG GGATGGTTCC CATCCGCGTG GTGGTCCTCG ACGTAAATGA CCACATTCCA 
AAATTTACAC AGTCTGTGTA TAGAGCGAGT GTGCCTGAAA ACCTCAGCTC CGGAACGCGG 
GTGCTCGTGG TAAATGCCAC AGACCCAGAT GAGGGTATCA ACGGGGAAGT GATGTACACT 
TTCCGGAAAA TGAAAAGCAA AGCTTCTGAA ATATTTCAAC TGAATTCTCA AACTGGAGAA 
GTTCTAGTCG GAAAGCCGCT GGATTTTGAA AAATATAGAT TCTATGAGAT GGAAATTCAA 
GGCCAAGATG GTGGGGGGTT GTTGAGCACC ACCATGTTGC TGATCACGGT TGAAGATGTG 
AATGACAACG TTCCAGAGAT AACTGTCACC TCTTCCATCA ACTCAGTGCC GGAAAATTCT 
CCTTCGGGTA CAGTAATTGC TCTTCTAAAC GTTCAGGATC AAGATTCTGG AGAAAATGGT 
CAGGTCTCTT GCTTCATTCC TAGTGGTCTT CCTTTTAAGT TAGAGAAAAC CTATGGAAAT 
TATTATAAAT TGGTAACCGA TAGTGAACTG GACCGGGAGC AGGTAGAGAG CTACAATATT 
ACACTGATCG CCAAAGATCA GGGAAGTCCA CCCTTGTCTA CAGCAACTCA CCTCCTGCTC 
AAAGTGGCAG ATGCCAATGA CAATCCTCCA GTTTTCACTC ACTCGTCTTA CTCGGCCTAC 
ATTCCTGAAA ACAACCCTAG AGGTTCCTCC ATCTTCTCAG TGACCGCCAT TGATAGGGAC 
AGCAGAGAAA ATGCCCAGGT CACGTACTCT CTGGCTGAGT ACAGTATCCA GGGATCACCT 
CTGTCCTCTT ACGTTTCTAT CAACTCAGAC ACCGGTGTGC TGTATGCCTT GCAATCCTTC 
GACTATGAGC AGTTCCAGAC CCTACAACTG GGAGTGACCG CTAGTGACAG TGGGAACCCA 
CCATTAAGCA GCAATATTTC ACTGACCCTT TTCGTGCTGG ACCAGAATGA CAACACTCCA 
GAGATCCTAT ACCCCTCTCT CCCTACTGAT GGCTCCACTG GTGTGGAATT GGCGCCTCGC 
TCCGCAGAGC CAGGTTATTT AGTGACCAAG GTGGTGGCTG TAGACAGAGA CTCCGGGCAG 
AACGCTTGGC TGTCCTACCG CCTGCTCAAA GCCAGCGAGC CAGGCCTCTT CTCCGTGGGG 
CTGCACACGG GGGAGGTGCG CACGGCCCGA GCCATGATGG ATAAAGATGC TCTCAAGCAG 
AGCCTCGTTG TAACTGTGCA GGATCACGGC CAGCCTCCTC TCTCCGCCAC TGTCAGGCTC 
ACCGTGGCGG TGGCTGACAG CATTCCAGAG GTTCTGGAGG ACTTGGTTAG TCTAGAGTCT 
CCTGCCAACC GGGATGAGTC GAGTCTCACC CTCTACCTAG TGGTGGCCAT CACTGCAGTC 
TCCTGCATCT TCCTCATCTT TGTCATGGTA CTGCTGGCTC TCAGGCTTCG GCGCTGGCAC 
TCATCACGTC TGCTCCAGGC TGCCAGCGGA TTGGCTGGCG TGCCTCCTTC GCACTTTGTG 
GGTGTGGACG GGATGCATGC TTTCCTCCAG ACCTATTCCC ACGAAGTTTC GCTCACTGCA 
GACTCAAGGA AGAGTCACCT GATCTTCCCG CAGCCCAACT ATGCAGACAC GCTCATCAGC 
CAGGAGAGCT GTGGGAAAAG CGAGCCTCTA CTAATACCTG AAGACTCAGC TACAGTTTTA 
GGCAAATGTG AGCCAACCGA TATTCAGCAA GCCCCGCCCA ACACTGACTG GCGTTTCTCT 
CAAGCCCAGA GACCCGGCAC GAGCGGATCC CAAAATGGGG ATGAAACCGG CACCTGGCCC 
AACAACCAGT TCGATACAGA GATGCTGCAA GCCATGATCT TGGCCTCTGC CAGTGAAGCC 
GCTGATGGGA GCTCCACTCT GGGAGGGGGC ACTGGCACTA TGGGTTTGAG CGCTCGATAT 
GGACCCCAGT TTACCCTGCA GCACGTGCCT GACTACCGCC AGAACGTGTA CATCCCTGGC 
AGCAATGCCA CACTGACCAA CGCAGCTGGC AAACGAGATG GCAAGGCTCC GGCAGGCGGC 
AATGGCAACA AGAAGAAGTC GGGCAAGAAA GAGAAGAAGT AA