LOC7477122 cDNA ORF clone, Populus trichocarpa(black cottonwood)

Gene
Clones
gRNAs

Summary

Gene Symbol	LOC7477122
Entrez Gene ID	7477122
Full Name	hypothetical protein
Synonyms	POPTRDRAFT_801003
Gene Type	protein-coding
Organism	Populus trichocarpa(black cottonwood)

mRNA and Protein(s)

mRNA	Protein	Name
XM_002307085.2	XP_002307121.1	hypothetical protein
XM_002307085.3	XP_002307121.1	probable inactive receptor kinase At5g10020

Pathways from BioSystems
Gene Ontology
Bibliography

Related articles in PubMed

The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S, D?jardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S, Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J, Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B, Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M, Jorgensen R, Joshi C, Kangasj?rvi J, Karlsson J, Kelleher C, Kirkpatrick R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Lepl? JC, Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR, Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G, Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouz? P, Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F, Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S, Yang G, Yin T, Douglas C, Marra M, Sandberg G, Van de Peer Y, Rokhsar D
Science (New York, N.Y.)313(5793)1596-604(2006 Sep)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following LOC7477122 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC7477122 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)
OPa12240	XM_002307085.3 Latest version!	Populus trichocarpa probable inactive receptor kinase At5g10020 (LOC7477122), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	20	$629.30 $899.00
View Old Accession Versions >>
OPa12240	XM_002307085.2	Populus trichocarpa hypothetical protein (POPTR_0005s08470g) mRNA, complete cds.	pcDNA3.1-C-(k)DYK or customized vector	20	$629.30 $899.00
Hide Old Accession Versions >>

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

LOC7477122 ( XM_002307085.2 ) cDNA ORF clone, Populus trichocarpa(black cottonwood) -> XP_002307121.1 Populus trichocarpa hypothetical protein (POPTR_0005s08470g) mRNA, complete cds.

Price & Availability↑

CloneID	OPa12240
Clone ID Related Accession (Same CDS sequence)	XM_002307085.2 , XM_002307085.3
Accession Version	XM_002307085.2	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 3162bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2013-12-30
Organism	Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
Product	hypothetical protein
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_008471). On Dec 16, 2013 this sequence version replaced XM_002307085.1. COMPLETENESS: incomplete on the 3' end.

ATGACTCTTT TCACTTTCCT TTTCACTCTC TCTCTACTCT TTTTCTTCAC TTCCGGCTCC 
GACCTCCGAT CCTTACTCGA ATTCAAAAAA GGTATCCAAT CCGACCCGCT CCATATGATC 
TCTAAATGGG ACCCCTCTGC TTTACCCGAC CCTAATTCTT GCCCCCATTC CTGGCCCGGT 
ATCTCCTGCG ACCCCAATTC CGATTCCGTC ATTTCTATTA CCCTAGACCG CCTTGGTCTC 
GCCGGTGACT TGAAGTTCTC CACCTTACTA AGCCTCAACT CCCTGCAGAG TATTTCACTT 
TCGGGTAATC AGTTTACGGG TCGCCTTGTA CCCGCATTGG GATCAATGAG CTCATTACAG 
TACTTGGATC TGTCTAATAA CAACTTTTCA GGTCCGATCC CGGGTCGGAT CGCGGAGTTA 
TGGAATTTGA AGTATTTGAA CTTGTCAACG AATGGTTTCG AAGGCGGGTT TCCCGTCGGT 
TTACCAGTTG GGTTTAGGAA TTTGCAGCAA TTGAGGGTTT TGGATTTGAG TTCTAATAGG 
TTTTGGGGTG ATATTAGTGC GGTCTTAAGT GAATTGATTC ATTTAGAAAA AGTGGATTTG 
AGTGATAATG AGTTTTCTGG CGGGTTTAGT GACATAAGTG GAGAGAATGT GTCAGGTTTG 
GCCAATACAT TGCATCTTTT GAATTTGAGA AAGAATAAAT TTAATGGTGG GTTTTTGAAA 
GCAGACGTAA TTGGGCTGTT TAGGAATTTG GAGGTTTTGG ATTTGGGGAA TAATGAGATT 
AATGGAGAAT TGCCTTCATT TGGGTCTTTG ACGAATTTGA AGGTTTTGAG GTTGGGGAAT 
AATCAGCTTT ATGGAGGTAT ACCCGAGGAA TTGTTGAACG GGTCGATACC GATTGAAGAA 
CTGGATCTTA GTGGCAATGG ATTTACAGGT TATATTAATG AAATTCACTC CACAACTTTG 
AATGTTTTGA ATGTTTCTTC AAATGGTTTA AAAGGTCACT TGCCCACTTT TCTTCAAAGA 
TGTTCAGTTC TGGATTTGAG TGGAAATATG ATCACTGGTG ACATGTCTGT TATGCAAAAT 
TGGGGAGCCA CTTTGGAGGT TCTTGATTTG AGTTCAAACC AGTTATCCAG AAGCTTGCCA 
AACTTGACTC CTCAGTTTGT GAGGTTAACT AAACTTAATC TTAGGAATAA TTCCCTAAAA 
GGCAATTTGC CTCCTCAGTT GTGGGACATT TCCACATTGT CTTCAGTTGA CCTCAGCTTA 
AATCAACTCA ATGGGCCTAT TCCGGGTAGT TTCTTTACTT CACTGACCTT GACGAACCTG 
AATCTTTCTG GAAATCAGTT TTCAGGGCCA ATTCCAGTTC AAGGGTCAGG TGCAGGCGAA 
TTATTAGTTC TACCTTCTTA TCCATTGATG GAGTCTCTTG ATGTCTCTCA AAATTCATTA 
TCTGGTCCAT TGCCTTCTGG CATAGGCAAC TTTGCCAATC TCAAATCACT GAATCTTTCA 
CATAATAACT TAACAGGACA GCTGCCAATT GAACTCAGCA AGCTAACCTA CTTGCAGTAC 
CTTGATTTAT CTGCCAACAA TTTTCAGGGT AAAATCCCTG ACAAGCTTCC ATCCAGTCTG 
ATTGGATTGA ACATGTCCTA TAATGATCTC TCTGGAAATA TTCCACAAAA TTTGAGAAAT 
AAATTTGATA TTACTTCATT TCTTCCTGGG AATCCCTCAT TAATCATCCC AAAGGCCGGT 
GGACCATCAA CAAATTCTGT GCCACATCAC ATTTCTGGAG GAGGGAAACA CGGGTCAAAG 
CGTAATATTA CAATTGCAAT AATTGTTGCT ACAGTCGGGG CTGCTGCAAT GGTTGCTTTT 
GTTTTATTGG CCTATCAGCG GGCACAGCGG AAAGAATTTC ATGGGAGAAG TGATTTTAGT 
GGTCAAACAG CAATGGAGGA TGCTAAGCTA GGAAGATCTT CCCGAATTTC CCTTTTCAAA 
TTCCAATTGA ATGCTCACCG CCCTCCAACT TCATTGAGTT TTTCGAACAA TCACTTGCTT 
ACTGCAAATT CAAGGTCATT ATCAGGGCAG ACAGAATCTG CAACTGAAAT TGTTGAGCAT 
AGTTTGTATG AAGGAATGAT GGCGAGTTCA TCAATTCCTA ATTTGCTAGA TGACCATCCC 
ACAACATCAG GAAGGAAGTC CTCCCCAGGT TCCCCATTAT CTTCCTCACC TCGTTTTGTT 
GAACCTGCAA AATTGGATGT CTATTCACCA GACAGGTTGG CTGGGGAACT GTCGTTCCTT 
GATAGTTCAC TTGCATTTAC AGCAGAAGAG TTATCTCGAG CTCCAGCTGA AGTTCTTGGC 
AGAAGCAGCC ATGGAACTTT ATATAAGGCT ACTCTAGACA GTGGACATAT GCTGACTGTG 
AAGTGGTTGC GGGTTGGACT AGTCAAACAT AAGAAAGAAT TTGCTAAGGA AGTTAAAAAG 
ATTGGCTCTA TACGACACCC AAATATTGTT CCACTGCGGG CATATTATTG GGGGCCTAGA 
GAGCAAGAAA GACTTCTTTT AGCTGACTAT ATCCAGGGTG ATAGCTTGGC CCTACATCTA 
TATGAAACAA CACCTCGGAG GTACTCCCTG TTGTCATTCA GCCAAAGACT AAAAGTTGCT 
GTTGATGTTG CTCGGTGTCT ATTGTATCTT CATGATAGAG GCATGCTCCA TGGAAATCTA 
AAGCCAGCAA ATATACTTCT GGAAGGTCCT GATTACAATA CTCGTCTTAC TGATTATGGA 
CTACACCGTT TGATGACACC TGCTGGCATT GCAGAGCAGA TACTAAATCT TGGAGCACTA 
GGATATCGAG CTCCAGAGCT TGATAATGCA TCTAAACCTG CGCCTTCATT CAAGGCTGAC 
GTGTATGCAT TTGGAGTGAT CCTGATGGAA TTGTTAACCA GAAGAAGTGC TGGTGACATA 
ATATCAGGTC AGTCAGGAGC TGTTGACCTT ACAGATTGGG TTCAGTTGTG CGATCAAGAA 
GGAAGACGAA TGGACTGCAT TGACAGGGAT ATTGCAGGTG GGGAAGAACC AACGAAGGCA 
ATGGATGATT TGCTTGCCAT ATCGCTTAAG TGTATTCTTC CTGTAAATGA GAGGCCTAAC 
ATCAGACAAG TCTTTGATGA TCTATGTTCT ATATCTGTTT GA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_002307121.1
CDS	90..3251
Translation	MTLFTFLFTLSLLFFFTSGSDLRSLLEFKKGIQSDPLHMISKWDPSALPDPNSCPHSWPGISCDPNSDSVISITLDRLGLAGDLKFSTLLSLNSLQSISLSGNQFTGRLVPALGSMSSLQYLDLSNNNFSGPIPGRIAELWNLKYLNLSTNGFEGGFPVGLPVGFRNLQQLRVLDLSSNRFWGDISAVLSELIHLEKVDLSDNEFSGGFSDISGENVSGLANTLHLLNLRKNKFNGGFLKADVIGLFRNLEVLDLGNNEINGELPSFGSLTNLKVLRLGNNQLYGGIPEELLNGSIPIEELDLSGNGFTGYINEIHSTTLNVLNVSSNGLKGHLPTFLQRCSVLDLSGNMITGDMSVMQNWGATLEVLDLSSNQLSRSLPNLTPQFVRLTKLNLRNNSLKGNLPPQLWDISTLSSVDLSLNQLNGPIPGSFFTSLTLTNLNLSGNQFSGPIPVQGSGAGELLVLPSYPLMESLDVSQNSLSGPLPSGIGNFANLKSLNLSHNNLTGQLPIELSKLTYLQYLDLSANNFQGKIPDKLPSSLIGLNMSYNDLSGNIPQNLRNKFDITSFLPGNPSLIIPKAGGPSTNSVPHHISGGGKHGSKRNITIAIIVATVGAAAMVAFVLLAYQRAQRKEFHGRSDFSGQTAMEDAKLGRSSRISLFKFQLNAHRPPTSLSFSNNHLLTANSRSLSGQTESATEIVEHSLYEGMMASSSIPNLLDDHPTTSGRKSSPGSPLSSSPRFVEPAKLDVYSPDRLAGELSFLDSSLAFTAEELSRAPAEVLGRSSHGTLYKATLDSGHMLTVKWLRVGLVKHKKEFAKEVKKIGSIRHPNIVPLRAYYWGPREQERLLLADYIQGDSLALHLYETTPRRYSLLSFSQRLKVAVDVARCLLYLHDRGMLHGNLKPANILLEGPDYNTRLTDYGLHRLMTPAGIAEQILNLGALGYRAPELDNASKPAPSFKADVYAFGVILMELLTRRSAGDIISGQSGAVDLTDWVQLCDQEGRRMDCIDRDIAGGEEPTKAMDDLLAISLKCILPVNERPNIRQVFDDLCSISV

Target ORF information:

RefSeq Version	XM_002307085.2
Organism	Populus trichocarpa(Populus balsamifera subsp. trichocarpa)
Definition	Populus trichocarpa hypothetical protein (POPTR_0005s08470g) mRNA, complete cds.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_002307085.2

ORF Insert Sequence:

ATGACTCTTT TCACTTTCCT TTTCACTCTC TCTCTACTCT TTTTCTTCAC TTCCGGCTCC 
GACCTCCGAT CCTTACTCGA ATTCAAAAAA GGTATCCAAT CCGACCCGCT CCATATGATC 
TCTAAATGGG ACCCCTCTGC TTTACCCGAC CCTAATTCTT GCCCCCATTC CTGGCCCGGT 
ATCTCCTGCG ACCCCAATTC CGATTCCGTC ATTTCTATTA CCCTAGACCG CCTTGGTCTC 
GCCGGTGACT TGAAGTTCTC CACCTTACTA AGCCTCAACT CCCTGCAGAG TATTTCACTT 
TCGGGTAATC AGTTTACGGG TCGCCTTGTA CCCGCATTGG GATCAATGAG CTCATTACAG 
TACTTGGATC TGTCTAATAA CAACTTTTCA GGTCCGATCC CGGGTCGGAT CGCGGAGTTA 
TGGAATTTGA AGTATTTGAA CTTGTCAACG AATGGTTTCG AAGGCGGGTT TCCCGTCGGT 
TTACCAGTTG GGTTTAGGAA TTTGCAGCAA TTGAGGGTTT TGGATTTGAG TTCTAATAGG 
TTTTGGGGTG ATATTAGTGC GGTCTTAAGT GAATTGATTC ATTTAGAAAA AGTGGATTTG 
AGTGATAATG AGTTTTCTGG CGGGTTTAGT GACATAAGTG GAGAGAATGT GTCAGGTTTG 
GCCAATACAT TGCATCTTTT GAATTTGAGA AAGAATAAAT TTAATGGTGG GTTTTTGAAA 
GCAGACGTAA TTGGGCTGTT TAGGAATTTG GAGGTTTTGG ATTTGGGGAA TAATGAGATT 
AATGGAGAAT TGCCTTCATT TGGGTCTTTG ACGAATTTGA AGGTTTTGAG GTTGGGGAAT 
AATCAGCTTT ATGGAGGTAT ACCCGAGGAA TTGTTGAACG GGTCGATACC GATTGAAGAA 
CTGGATCTTA GTGGCAATGG ATTTACAGGT TATATTAATG AAATTCACTC CACAACTTTG 
AATGTTTTGA ATGTTTCTTC AAATGGTTTA AAAGGTCACT TGCCCACTTT TCTTCAAAGA 
TGTTCAGTTC TGGATTTGAG TGGAAATATG ATCACTGGTG ACATGTCTGT TATGCAAAAT 
TGGGGAGCCA CTTTGGAGGT TCTTGATTTG AGTTCAAACC AGTTATCCAG AAGCTTGCCA 
AACTTGACTC CTCAGTTTGT GAGGTTAACT AAACTTAATC TTAGGAATAA TTCCCTAAAA 
GGCAATTTGC CTCCTCAGTT GTGGGACATT TCCACATTGT CTTCAGTTGA CCTCAGCTTA 
AATCAACTCA ATGGGCCTAT TCCGGGTAGT TTCTTTACTT CACTGACCTT GACGAACCTG 
AATCTTTCTG GAAATCAGTT TTCAGGGCCA ATTCCAGTTC AAGGGTCAGG TGCAGGCGAA 
TTATTAGTTC TACCTTCTTA TCCATTGATG GAGTCTCTTG ATGTCTCTCA AAATTCATTA 
TCTGGTCCAT TGCCTTCTGG CATAGGCAAC TTTGCCAATC TCAAATCACT GAATCTTTCA 
CATAATAACT TAACAGGACA GCTGCCAATT GAACTCAGCA AGCTAACCTA CTTGCAGTAC 
CTTGATTTAT CTGCCAACAA TTTTCAGGGT AAAATCCCTG ACAAGCTTCC ATCCAGTCTG 
ATTGGATTGA ACATGTCCTA TAATGATCTC TCTGGAAATA TTCCACAAAA TTTGAGAAAT 
AAATTTGATA TTACTTCATT TCTTCCTGGG AATCCCTCAT TAATCATCCC AAAGGCCGGT 
GGACCATCAA CAAATTCTGT GCCACATCAC ATTTCTGGAG GAGGGAAACA CGGGTCAAAG 
CGTAATATTA CAATTGCAAT AATTGTTGCT ACAGTCGGGG CTGCTGCAAT GGTTGCTTTT 
GTTTTATTGG CCTATCAGCG GGCACAGCGG AAAGAATTTC ATGGGAGAAG TGATTTTAGT 
GGTCAAACAG CAATGGAGGA TGCTAAGCTA GGAAGATCTT CCCGAATTTC CCTTTTCAAA 
TTCCAATTGA ATGCTCACCG CCCTCCAACT TCATTGAGTT TTTCGAACAA TCACTTGCTT 
ACTGCAAATT CAAGGTCATT ATCAGGGCAG ACAGAATCTG CAACTGAAAT TGTTGAGCAT 
AGTTTGTATG AAGGAATGAT GGCGAGTTCA TCAATTCCTA ATTTGCTAGA TGACCATCCC 
ACAACATCAG GAAGGAAGTC CTCCCCAGGT TCCCCATTAT CTTCCTCACC TCGTTTTGTT 
GAACCTGCAA AATTGGATGT CTATTCACCA GACAGGTTGG CTGGGGAACT GTCGTTCCTT 
GATAGTTCAC TTGCATTTAC AGCAGAAGAG TTATCTCGAG CTCCAGCTGA AGTTCTTGGC 
AGAAGCAGCC ATGGAACTTT ATATAAGGCT ACTCTAGACA GTGGACATAT GCTGACTGTG 
AAGTGGTTGC GGGTTGGACT AGTCAAACAT AAGAAAGAAT TTGCTAAGGA AGTTAAAAAG 
ATTGGCTCTA TACGACACCC AAATATTGTT CCACTGCGGG CATATTATTG GGGGCCTAGA 
GAGCAAGAAA GACTTCTTTT AGCTGACTAT ATCCAGGGTG ATAGCTTGGC CCTACATCTA 
TATGAAACAA CACCTCGGAG GTACTCCCTG TTGTCATTCA GCCAAAGACT AAAAGTTGCT 
GTTGATGTTG CTCGGTGTCT ATTGTATCTT CATGATAGAG GCATGCTCCA TGGAAATCTA 
AAGCCAGCAA ATATACTTCT GGAAGGTCCT GATTACAATA CTCGTCTTAC TGATTATGGA 
CTACACCGTT TGATGACACC TGCTGGCATT GCAGAGCAGA TACTAAATCT TGGAGCACTA 
GGATATCGAG CTCCAGAGCT TGATAATGCA TCTAAACCTG CGCCTTCATT CAAGGCTGAC 
GTGTATGCAT TTGGAGTGAT CCTGATGGAA TTGTTAACCA GAAGAAGTGC TGGTGACATA 
ATATCAGGTC AGTCAGGAGC TGTTGACCTT ACAGATTGGG TTCAGTTGTG CGATCAAGAA 
GGAAGACGAA TGGACTGCAT TGACAGGGAT ATTGCAGGTG GGGAAGAACC AACGAAGGCA 
ATGGATGATT TGCTTGCCAT ATCGCTTAAG TGTATTCTTC CTGTAAATGA GAGGCCTAAC 
ATCAGACAAG TCTTTGATGA TCTATGTTCT ATATCTGTTT GA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

LOC7477122 ( XM_002307085.3 ) cDNA ORF clone, Populus trichocarpa(black cottonwood) -> XP_002307121.1 Populus trichocarpa probable inactive receptor kinase At5g10020 (LOC7477122), transcript variant X1, mRNA.

Price & Availability↑

CloneID	OPa12240
Clone ID Related Accession (Same CDS sequence)	XM_002307085.2 , XM_002307085.3
Accession Version	XM_002307085.3 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 3162bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2018-04-08
Organism	Populus trichocarpa(black cottonwood)
Product	probable inactive receptor kinase At5g10020
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037289.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Apr 9, 2018 this sequence version replaced XM_002307085.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Populus trichocarpa Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGACTCTTT TCACTTTCCT TTTCACTCTC TCTCTACTCT TTTTCTTCAC TTCCGGCTCC 
GACCTCCGAT CCTTACTCGA ATTCAAAAAA GGTATCCAAT CCGACCCGCT CCATATGATC 
TCTAAATGGG ACCCCTCTGC TTTACCCGAC CCTAATTCTT GCCCCCATTC CTGGCCCGGT 
ATCTCCTGCG ACCCCAATTC CGATTCCGTC ATTTCTATTA CCCTAGACCG CCTTGGTCTC 
GCCGGTGACT TGAAGTTCTC CACCTTACTA AGCCTCAACT CCCTGCAGAG TATTTCACTT 
TCGGGTAATC AGTTTACGGG TCGCCTTGTA CCCGCATTGG GATCAATGAG CTCATTACAG 
TACTTGGATC TGTCTAATAA CAACTTTTCA GGTCCGATCC CGGGTCGGAT CGCGGAGTTA 
TGGAATTTGA AGTATTTGAA CTTGTCAACG AATGGTTTCG AAGGCGGGTT TCCCGTCGGT 
TTACCAGTTG GGTTTAGGAA TTTGCAGCAA TTGAGGGTTT TGGATTTGAG TTCTAATAGG 
TTTTGGGGTG ATATTAGTGC GGTCTTAAGT GAATTGATTC ATTTAGAAAA AGTGGATTTG 
AGTGATAATG AGTTTTCTGG CGGGTTTAGT GACATAAGTG GAGAGAATGT GTCAGGTTTG 
GCCAATACAT TGCATCTTTT GAATTTGAGA AAGAATAAAT TTAATGGTGG GTTTTTGAAA 
GCAGACGTAA TTGGGCTGTT TAGGAATTTG GAGGTTTTGG ATTTGGGGAA TAATGAGATT 
AATGGAGAAT TGCCTTCATT TGGGTCTTTG ACGAATTTGA AGGTTTTGAG GTTGGGGAAT 
AATCAGCTTT ATGGAGGTAT ACCCGAGGAA TTGTTGAACG GGTCGATACC GATTGAAGAA 
CTGGATCTTA GTGGCAATGG ATTTACAGGT TATATTAATG AAATTCACTC CACAACTTTG 
AATGTTTTGA ATGTTTCTTC AAATGGTTTA AAAGGTCACT TGCCCACTTT TCTTCAAAGA 
TGTTCAGTTC TGGATTTGAG TGGAAATATG ATCACTGGTG ACATGTCTGT TATGCAAAAT 
TGGGGAGCCA CTTTGGAGGT TCTTGATTTG AGTTCAAACC AGTTATCCAG AAGCTTGCCA 
AACTTGACTC CTCAGTTTGT GAGGTTAACT AAACTTAATC TTAGGAATAA TTCCCTAAAA 
GGCAATTTGC CTCCTCAGTT GTGGGACATT TCCACATTGT CTTCAGTTGA CCTCAGCTTA 
AATCAACTCA ATGGGCCTAT TCCGGGTAGT TTCTTTACTT CACTGACCTT GACGAACCTG 
AATCTTTCTG GAAATCAGTT TTCAGGGCCA ATTCCAGTTC AAGGGTCAGG TGCAGGCGAA 
TTATTAGTTC TACCTTCTTA TCCATTGATG GAGTCTCTTG ATGTCTCTCA AAATTCATTA 
TCTGGTCCAT TGCCTTCTGG CATAGGCAAC TTTGCCAATC TCAAATCACT GAATCTTTCA 
CATAATAACT TAACAGGACA GCTGCCAATT GAACTCAGCA AGCTAACCTA CTTGCAGTAC 
CTTGATTTAT CTGCCAACAA TTTTCAGGGT AAAATCCCTG ACAAGCTTCC ATCCAGTCTG 
ATTGGATTGA ACATGTCCTA TAATGATCTC TCTGGAAATA TTCCACAAAA TTTGAGAAAT 
AAATTTGATA TTACTTCATT TCTTCCTGGG AATCCCTCAT TAATCATCCC AAAGGCCGGT 
GGACCATCAA CAAATTCTGT GCCACATCAC ATTTCTGGAG GAGGGAAACA CGGGTCAAAG 
CGTAATATTA CAATTGCAAT AATTGTTGCT ACAGTCGGGG CTGCTGCAAT GGTTGCTTTT 
GTTTTATTGG CCTATCAGCG GGCACAGCGG AAAGAATTTC ATGGGAGAAG TGATTTTAGT 
GGTCAAACAG CAATGGAGGA TGCTAAGCTA GGAAGATCTT CCCGAATTTC CCTTTTCAAA 
TTCCAATTGA ATGCTCACCG CCCTCCAACT TCATTGAGTT TTTCGAACAA TCACTTGCTT 
ACTGCAAATT CAAGGTCATT ATCAGGGCAG ACAGAATCTG CAACTGAAAT TGTTGAGCAT 
AGTTTGTATG AAGGAATGAT GGCGAGTTCA TCAATTCCTA ATTTGCTAGA TGACCATCCC 
ACAACATCAG GAAGGAAGTC CTCCCCAGGT TCCCCATTAT CTTCCTCACC TCGTTTTGTT 
GAACCTGCAA AATTGGATGT CTATTCACCA GACAGGTTGG CTGGGGAACT GTCGTTCCTT 
GATAGTTCAC TTGCATTTAC AGCAGAAGAG TTATCTCGAG CTCCAGCTGA AGTTCTTGGC 
AGAAGCAGCC ATGGAACTTT ATATAAGGCT ACTCTAGACA GTGGACATAT GCTGACTGTG 
AAGTGGTTGC GGGTTGGACT AGTCAAACAT AAGAAAGAAT TTGCTAAGGA AGTTAAAAAG 
ATTGGCTCTA TACGACACCC AAATATTGTT CCACTGCGGG CATATTATTG GGGGCCTAGA 
GAGCAAGAAA GACTTCTTTT AGCTGACTAT ATCCAGGGTG ATAGCTTGGC CCTACATCTA 
TATGAAACAA CACCTCGGAG GTACTCCCTG TTGTCATTCA GCCAAAGACT AAAAGTTGCT 
GTTGATGTTG CTCGGTGTCT ATTGTATCTT CATGATAGAG GCATGCTCCA TGGAAATCTA 
AAGCCAGCAA ATATACTTCT GGAAGGTCCT GATTACAATA CTCGTCTTAC TGATTATGGA 
CTACACCGTT TGATGACACC TGCTGGCATT GCAGAGCAGA TACTAAATCT TGGAGCACTA 
GGATATCGAG CTCCAGAGCT TGATAATGCA TCTAAACCTG CGCCTTCATT CAAGGCTGAC 
GTGTATGCAT TTGGAGTGAT CCTGATGGAA TTGTTAACCA GAAGAAGTGC TGGTGACATA 
ATATCAGGTC AGTCAGGAGC TGTTGACCTT ACAGATTGGG TTCAGTTGTG CGATCAAGAA 
GGAAGACGAA TGGACTGCAT TGACAGGGAT ATTGCAGGTG GGGAAGAACC AACGAAGGCA 
ATGGATGATT TGCTTGCCAT ATCGCTTAAG TGTATTCTTC CTGTAAATGA GAGGCCTAAC 
ATCAGACAAG TCTTTGATGA TCTATGTTCT ATATCTGTTT GA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_002307121.1
CDS	193..3354
Translation	MTLFTFLFTLSLLFFFTSGSDLRSLLEFKKGIQSDPLHMISKWDPSALPDPNSCPHSWPGISCDPNSDSVISITLDRLGLAGDLKFSTLLSLNSLQSISLSGNQFTGRLVPALGSMSSLQYLDLSNNNFSGPIPGRIAELWNLKYLNLSTNGFEGGFPVGLPVGFRNLQQLRVLDLSSNRFWGDISAVLSELIHLEKVDLSDNEFSGGFSDISGENVSGLANTLHLLNLRKNKFNGGFLKADVIGLFRNLEVLDLGNNEINGELPSFGSLTNLKVLRLGNNQLYGGIPEELLNGSIPIEELDLSGNGFTGYINEIHSTTLNVLNVSSNGLKGHLPTFLQRCSVLDLSGNMITGDMSVMQNWGATLEVLDLSSNQLSRSLPNLTPQFVRLTKLNLRNNSLKGNLPPQLWDISTLSSVDLSLNQLNGPIPGSFFTSLTLTNLNLSGNQFSGPIPVQGSGAGELLVLPSYPLMESLDVSQNSLSGPLPSGIGNFANLKSLNLSHNNLTGQLPIELSKLTYLQYLDLSANNFQGKIPDKLPSSLIGLNMSYNDLSGNIPQNLRNKFDITSFLPGNPSLIIPKAGGPSTNSVPHHISGGGKHGSKRNITIAIIVATVGAAAMVAFVLLAYQRAQRKEFHGRSDFSGQTAMEDAKLGRSSRISLFKFQLNAHRPPTSLSFSNNHLLTANSRSLSGQTESATEIVEHSLYEGMMASSSIPNLLDDHPTTSGRKSSPGSPLSSSPRFVEPAKLDVYSPDRLAGELSFLDSSLAFTAEELSRAPAEVLGRSSHGTLYKATLDSGHMLTVKWLRVGLVKHKKEFAKEVKKIGSIRHPNIVPLRAYYWGPREQERLLLADYIQGDSLALHLYETTPRRYSLLSFSQRLKVAVDVARCLLYLHDRGMLHGNLKPANILLEGPDYNTRLTDYGLHRLMTPAGIAEQILNLGALGYRAPELDNASKPAPSFKADVYAFGVILMELLTRRSAGDIISGQSGAVDLTDWVQLCDQEGRRMDCIDRDIAGGEEPTKAMDDLLAISLKCILPVNERPNIRQVFDDLCSISV

Target ORF information:

RefSeq Version	XM_002307085.3
Organism	Populus trichocarpa(black cottonwood)
Definition	Populus trichocarpa probable inactive receptor kinase At5g10020 (LOC7477122), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_002307085.3

ORF Insert Sequence:

ATGACTCTTT TCACTTTCCT TTTCACTCTC TCTCTACTCT TTTTCTTCAC TTCCGGCTCC 
GACCTCCGAT CCTTACTCGA ATTCAAAAAA GGTATCCAAT CCGACCCGCT CCATATGATC 
TCTAAATGGG ACCCCTCTGC TTTACCCGAC CCTAATTCTT GCCCCCATTC CTGGCCCGGT 
ATCTCCTGCG ACCCCAATTC CGATTCCGTC ATTTCTATTA CCCTAGACCG CCTTGGTCTC 
GCCGGTGACT TGAAGTTCTC CACCTTACTA AGCCTCAACT CCCTGCAGAG TATTTCACTT 
TCGGGTAATC AGTTTACGGG TCGCCTTGTA CCCGCATTGG GATCAATGAG CTCATTACAG 
TACTTGGATC TGTCTAATAA CAACTTTTCA GGTCCGATCC CGGGTCGGAT CGCGGAGTTA 
TGGAATTTGA AGTATTTGAA CTTGTCAACG AATGGTTTCG AAGGCGGGTT TCCCGTCGGT 
TTACCAGTTG GGTTTAGGAA TTTGCAGCAA TTGAGGGTTT TGGATTTGAG TTCTAATAGG 
TTTTGGGGTG ATATTAGTGC GGTCTTAAGT GAATTGATTC ATTTAGAAAA AGTGGATTTG 
AGTGATAATG AGTTTTCTGG CGGGTTTAGT GACATAAGTG GAGAGAATGT GTCAGGTTTG 
GCCAATACAT TGCATCTTTT GAATTTGAGA AAGAATAAAT TTAATGGTGG GTTTTTGAAA 
GCAGACGTAA TTGGGCTGTT TAGGAATTTG GAGGTTTTGG ATTTGGGGAA TAATGAGATT 
AATGGAGAAT TGCCTTCATT TGGGTCTTTG ACGAATTTGA AGGTTTTGAG GTTGGGGAAT 
AATCAGCTTT ATGGAGGTAT ACCCGAGGAA TTGTTGAACG GGTCGATACC GATTGAAGAA 
CTGGATCTTA GTGGCAATGG ATTTACAGGT TATATTAATG AAATTCACTC CACAACTTTG 
AATGTTTTGA ATGTTTCTTC AAATGGTTTA AAAGGTCACT TGCCCACTTT TCTTCAAAGA 
TGTTCAGTTC TGGATTTGAG TGGAAATATG ATCACTGGTG ACATGTCTGT TATGCAAAAT 
TGGGGAGCCA CTTTGGAGGT TCTTGATTTG AGTTCAAACC AGTTATCCAG AAGCTTGCCA 
AACTTGACTC CTCAGTTTGT GAGGTTAACT AAACTTAATC TTAGGAATAA TTCCCTAAAA 
GGCAATTTGC CTCCTCAGTT GTGGGACATT TCCACATTGT CTTCAGTTGA CCTCAGCTTA 
AATCAACTCA ATGGGCCTAT TCCGGGTAGT TTCTTTACTT CACTGACCTT GACGAACCTG 
AATCTTTCTG GAAATCAGTT TTCAGGGCCA ATTCCAGTTC AAGGGTCAGG TGCAGGCGAA 
TTATTAGTTC TACCTTCTTA TCCATTGATG GAGTCTCTTG ATGTCTCTCA AAATTCATTA 
TCTGGTCCAT TGCCTTCTGG CATAGGCAAC TTTGCCAATC TCAAATCACT GAATCTTTCA 
CATAATAACT TAACAGGACA GCTGCCAATT GAACTCAGCA AGCTAACCTA CTTGCAGTAC 
CTTGATTTAT CTGCCAACAA TTTTCAGGGT AAAATCCCTG ACAAGCTTCC ATCCAGTCTG 
ATTGGATTGA ACATGTCCTA TAATGATCTC TCTGGAAATA TTCCACAAAA TTTGAGAAAT 
AAATTTGATA TTACTTCATT TCTTCCTGGG AATCCCTCAT TAATCATCCC AAAGGCCGGT 
GGACCATCAA CAAATTCTGT GCCACATCAC ATTTCTGGAG GAGGGAAACA CGGGTCAAAG 
CGTAATATTA CAATTGCAAT AATTGTTGCT ACAGTCGGGG CTGCTGCAAT GGTTGCTTTT 
GTTTTATTGG CCTATCAGCG GGCACAGCGG AAAGAATTTC ATGGGAGAAG TGATTTTAGT 
GGTCAAACAG CAATGGAGGA TGCTAAGCTA GGAAGATCTT CCCGAATTTC CCTTTTCAAA 
TTCCAATTGA ATGCTCACCG CCCTCCAACT TCATTGAGTT TTTCGAACAA TCACTTGCTT 
ACTGCAAATT CAAGGTCATT ATCAGGGCAG ACAGAATCTG CAACTGAAAT TGTTGAGCAT 
AGTTTGTATG AAGGAATGAT GGCGAGTTCA TCAATTCCTA ATTTGCTAGA TGACCATCCC 
ACAACATCAG GAAGGAAGTC CTCCCCAGGT TCCCCATTAT CTTCCTCACC TCGTTTTGTT 
GAACCTGCAA AATTGGATGT CTATTCACCA GACAGGTTGG CTGGGGAACT GTCGTTCCTT 
GATAGTTCAC TTGCATTTAC AGCAGAAGAG TTATCTCGAG CTCCAGCTGA AGTTCTTGGC 
AGAAGCAGCC ATGGAACTTT ATATAAGGCT ACTCTAGACA GTGGACATAT GCTGACTGTG 
AAGTGGTTGC GGGTTGGACT AGTCAAACAT AAGAAAGAAT TTGCTAAGGA AGTTAAAAAG 
ATTGGCTCTA TACGACACCC AAATATTGTT CCACTGCGGG CATATTATTG GGGGCCTAGA 
GAGCAAGAAA GACTTCTTTT AGCTGACTAT ATCCAGGGTG ATAGCTTGGC CCTACATCTA 
TATGAAACAA CACCTCGGAG GTACTCCCTG TTGTCATTCA GCCAAAGACT AAAAGTTGCT 
GTTGATGTTG CTCGGTGTCT ATTGTATCTT CATGATAGAG GCATGCTCCA TGGAAATCTA 
AAGCCAGCAA ATATACTTCT GGAAGGTCCT GATTACAATA CTCGTCTTAC TGATTATGGA 
CTACACCGTT TGATGACACC TGCTGGCATT GCAGAGCAGA TACTAAATCT TGGAGCACTA 
GGATATCGAG CTCCAGAGCT TGATAATGCA TCTAAACCTG CGCCTTCATT CAAGGCTGAC 
GTGTATGCAT TTGGAGTGAT CCTGATGGAA TTGTTAACCA GAAGAAGTGC TGGTGACATA 
ATATCAGGTC AGTCAGGAGC TGTTGACCTT ACAGATTGGG TTCAGTTGTG CGATCAAGAA 
GGAAGACGAA TGGACTGCAT TGACAGGGAT ATTGCAGGTG GGGAAGAACC AACGAAGGCA 
ATGGATGATT TGCTTGCCAT ATCGCTTAAG TGTATTCTTC CTGTAAATGA GAGGCCTAAC 
ATCAGACAAG TCTTTGATGA TCTATGTTCT ATATCTGTTT GA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
Science (New York, N.Y.)313(5793)1596-604(2006 Sep)
Tuskan GA,Difazio S,Jansson S,Bohlmann J,Grigoriev I,Hellsten U,Putnam N,Ralph S,Rombauts S,Salamov A,Schein J,Sterck L,Aerts A,Bhalerao RR,Bhalerao RP,Blaudez D,Boerjan W,Brun A,Brunner A,Busov V,Campbell M,Carlson J,Chalot M,Chapman J,Chen GL,Cooper D,Coutinho PM,Couturier J,Covert S,Cronk Q,Cunningham R,Davis J,Degroeve S,D?jardin A,Depamphilis C,Detter J,Dirks B,Dubchak I,Duplessis S,Ehlting J,Ellis B,Gendler K,Goodstein D,Gribskov M,Grimwood J,Groover A,Gunter L,Hamberger B,Heinze B,Helariutta Y,Henrissat B,Holligan D,Holt R,Huang W,Islam-Faridi N,Jones S,Jones-Rhoades M,Jorgensen R,Joshi C,Kangasj?rvi J,Karlsson J,Kelleher C,Kirkpatrick R,Kirst M,Kohler A,Kalluri U,Larimer F,Leebens-Mack J,Lepl? JC,Locascio P,Lou Y,Lucas S,Martin F,Montanini B,Napoli C,Nelson DR,Nelson C,Nieminen K,Nilsson O,Pereda V,Peter G,Philippe R,Pilate G,Poliakov A,Razumovskaya J,Richardson P,Rinaldi C,Ritland K,Rouz? P,Ryaboy D,Schmutz J,Schrader J,Segerman B,Shin H,Siddiqui A,Sterky F,Terry A,Tsai CJ,Uberbacher E,Unneberg P,Vahala J,Wall K,Wessler S,Yang G,Yin T,Douglas C,Marra M,Sandberg G,Van de Peer Y,Rokhsar D

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LOC7477122 cDNA ORF clone, Populus trichocarpa(black cottonwood)

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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