| Gene Symbol | LOC100301589 |
| Entrez Gene ID | 100301589 |
| Full Name | beta-defensin |
| Gene Type | protein-coding |
| Organism | Oryzias latipes(Japanese medaka) |
ORF » Species Summary » Oryzias latipes » LOC100301589 cDNA ORF clone
| Gene Symbol | LOC100301589 |
| Entrez Gene ID | 100301589 |
| Full Name | beta-defensin |
| Gene Type | protein-coding |
| Organism | Oryzias latipes(Japanese medaka) |
| mRNA | Protein | Name |
|---|---|---|
| NM_001160438.2 | NP_001153910.1 | beta-defensin precursor |
| NM_001160438.1 | NP_001153910.1 | beta-defensin precursor |
| XM_023962098.1 | XP_023817866.1 | beta-defensin isoform X1 |
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)
Antimicrobial activity-specific to Gram-negative bacteria and immune modulation-mediated NF-kappaB and Sp1 of a medaka beta-defensin.
Zhao JG, Zhou L, Jin JY, Zhao Z, Lan J, Zhang YB, Zhang QY, Gui JF
Developmental and comparative immunology33(4)624-37(2009 Apr)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LOC100301589 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC100301589 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
| CloneID | OJa20360 | |
| Clone ID Related Accession (Same CDS sequence) | NM_001160438.2 , NM_001160438.1 | |
| Accession Version | NM_001160438.2 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 192bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2018-02-17 | |
| Organism | Oryzias latipes(Japanese medaka) | |
| Product | beta-defensin precursor | |
| Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from EU676010.1. On Feb 16, 2018 this sequence version replaced NM_001160438.1. ##Evidence-Data-START## Transcript exon combination :: EU676010.1, DK175296.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00029877, SAMD00029878 [ECO:0000348] ##Evidence-Data-END## | |
1 | ATGAAGGGAC TGGGCTTGGT TCTCCTTGTG CTTCTTCTGA TGTTCGCAGA TGGGGAGGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001153910.1 |
| CDS | 28..219 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001160438.2 |
1 | ATGAAGGGAC TGGGCTTGGT TCTCCTTGTG CTTCTTCTGA TGTTCGCAGA TGGGGAGGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OJa20360 | |
| Clone ID Related Accession (Same CDS sequence) | NM_001160438.2 , NM_001160438.1 | |
| Accession Version | NM_001160438.1 | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 192bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2013-04-16 | |
| Organism | Oryzias latipes(Japanese medaka) | |
| Product | beta-defensin precursor | |
| Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from EU676010.1. ##Evidence-Data-START## Transcript exon combination :: EU676010.1 [ECO:0000332] ##Evidence-Data-END## | |
1 | ATGAAGGGAC TGGGCTTGGT TCTCCTTGTG CTTCTTCTGA TGTTCGCAGA TGGGGAGGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001153910.1 |
| CDS | 29..220 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001160438.1 |
1 | ATGAAGGGAC TGGGCTTGGT TCTCCTTGTG CTTCTTCTGA TGTTCGCAGA TGGGGAGGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OJa108453 | |
| Clone ID Related Accession (Same CDS sequence) | XM_023962098.1 | |
| Accession Version | XM_023962098.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 243bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2018-02-14 | |
| Organism | Oryzias latipes(Japanese medaka) | |
| Product | beta-defensin isoform X1 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_019872.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oryzias latipes Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGAAGCATC AGCCTGTGAG CAACAGTGTG AGAGCTTATT GGCACCCCAA CATGAAGGGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_023817866.1 |
| CDS | 394..636 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_023962098.1 |
1 | ATGAAGCATC AGCCTGTGAG CAACAGTGTG AGAGCTTATT GGCACCCCAA CATGAAGGGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. |
Antimicrobial activity-specific to Gram-negative bacteria and immune modulation-mediated NF-kappaB and Sp1 of a medaka beta-defensin. |