| Gene Symbol | cxcl12 |
| Entrez Gene ID | 100049305 |
| Full Name | C-X-C motif chemokine ligand 12 |
| Synonyms | sdf1a |
| Gene Type | protein-coding |
| Organism | Oryzias latipes(Japanese medaka) |
ORF » Species Summary » Oryzias latipes » cxcl12 cDNA ORF clone
| Gene Symbol | cxcl12 |
| Entrez Gene ID | 100049305 |
| Full Name | C-X-C motif chemokine ligand 12 |
| Synonyms | sdf1a |
| Gene Type | protein-coding |
| Organism | Oryzias latipes(Japanese medaka) |
| mRNA | Protein | Name |
|---|---|---|
| NM_001104727.2 | NP_001098197.1 | stromal cell-derived factor 1 precursor |
Mutation in cpsf6/CFIm68 (Cleavage and Polyadenylation Specificity Factor Subunit 6) causes short 3'UTRs and disturbs gene expression in developing embryos, as revealed by an analysis of primordial germ cell migration using the medaka mutant naruto.
Sasado T, Kondoh H, Furutani-Seiki M, Naruse K
PloS one12(3)e0172467(2017)
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)
Sequential SDF1a and b-induced mobility guides Medaka PGC migration.
Herpin A, Fischer P, Liedtke D, Kluever N, Neuner C, Raz E, Schartl M
Developmental biology320(2)319-27(2008 Aug)
Identification and lineage tracing of two populations of somatic gonadal precursors in medaka embryos.
Nakamura S, Kobayashi D, Aoki Y, Yokoi H, Ebe Y, Wittbrodt J, Tanaka M
Developmental biology295(2)678-88(2006 Jul)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
primordial germ cell movements are shown to be the consequence of a combination of active SDF1a and SDF1b-guided migration; both SDF1 co-orthologues show only partly overlapping expression pattern and cooperate in the correct positioning of the PGCs
Title: Sequential SDF1a and b-induced mobility guides Medaka PGC migration.
The following cxcl12 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the cxcl12 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
| CloneID | OJa20556 | |
| Clone ID Related Accession (Same CDS sequence) | NM_001104727.2 | |
| Accession Version | NM_001104727.2 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 309bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2019-01-22 | |
| Organism | Oryzias latipes(Japanese medaka) | |
| Product | stromal cell-derived factor 1 precursor | |
| Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CP020665.1. On Mar 9, 2017 this sequence version replaced NM_001104727.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: AB214908.1, LC150602.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA3466527 [ECO:0000348] ##Evidence-Data-END## | |
1 | ATGGACGCCA AGCTGCTCGC ACTGATGGCT CTGCTGACCG TGGCCACGCA CACCCCAACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001098197.1 |
| CDS | 83..391 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001104727.2 |
1 | ATGGACGCCA AGCTGCTCGC ACTGATGGCT CTGCTGACCG TGGCCACGCA CACCCCAACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Mutation in cpsf6/CFIm68 (Cleavage and Polyadenylation Specificity Factor Subunit 6) causes short 3'UTRs and disturbs gene expression in developing embryos, as revealed by an analysis of primordial germ cell migration using the medaka mutant naruto. |
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. |
Sequential SDF1a and b-induced mobility guides Medaka PGC migration. |
Identification and lineage tracing of two populations of somatic gonadal precursors in medaka embryos. |