| Gene Symbol | LOC25479532 |
| Entrez Gene ID | 25479532 |
| Full Name | DNA-3-methyladenine glycosylase I |
| Gene Type | protein-coding |
| Organism | Medicago truncatula(barrel medic) |
ORF » Species Summary » Medicago truncatula » LOC25479532 cDNA ORF clone
| Gene Symbol | LOC25479532 |
| Entrez Gene ID | 25479532 |
| Full Name | DNA-3-methyladenine glycosylase I |
| Gene Type | protein-coding |
| Organism | Medicago truncatula(barrel medic) |
| mRNA | Protein | Name |
|---|---|---|
| XM_013588050.1 | XP_013443504.1 | DNA-3-methyladenine glycosylase I |
| XM_013588051.1 | XP_013443505.1 | DNA-3-methyladenine glycosylase I |
| XM_013588050.2 | XP_013443504.1 | uncharacterized protein LOC25479532 isoform X1 |
| XM_013588051.2 | XP_013443505.1 | uncharacterized protein LOC25479532 isoform X2 |
An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
Tang H, Krishnakumar V, Bidwell S, Rosen B, Chan A, Zhou S, Gentzbittel L, Childs KL, Yandell M, Gundlach H, Mayer KF, Schwartz DC, Town CD
BMC genomics15312(2014 Apr)
The Medicago genome provides insight into the evolution of rhizobial symbioses.
Young ND, Debell? F, Oldroyd GE, Geurts R, Cannon SB, Udvardi MK, Benedito VA, Mayer KF, Gouzy J, Schoof H, Van de Peer Y, Proost S, Cook DR, Meyers BC, Spannagl M, Cheung F, De Mita S, Krishnakumar V, Gundlach H, Zhou S, Mudge J, Bharti AK, Murray JD, Naoumkina MA, Rosen B, Silverstein KA, Tang H, Rombauts S, Zhao PX, Zhou P, Barbe V, Bardou P, Bechner M, Bellec A, Berger A, Berg?s H, Bidwell S, Bisseling T, Choisne N, Couloux A, Denny R, Deshpande S, Dai X, Doyle JJ, Dudez AM, Farmer AD, Fouteau S, Franken C, Gibelin C, Gish J, Goldstein S, Gonz?lez AJ, Green PJ, Hallab A, Hartog M, Hua A, Humphray SJ, Jeong DH, Jing Y, J?cker A, Kenton SM, Kim DJ, Klee K, Lai H, Lang C, Lin S, Macmil SL, Magdelenat G, Matthews L, McCorrison J, Monaghan EL, Mun JH, Najar FZ, Nicholson C, Noirot C, O'Bleness M, Paule CR, Poulain J, Prion F, Qin B, Qu C, Retzel EF, Riddle C, Sallet E, Samain S, Samson N, Sanders I, Saurat O, Scarpelli C, Schiex T, Segurens B, Severin AJ, Sherrier DJ, Shi R, Sims S, Singer SR, Sinharoy S, Sterck L, Viollet A, Wang BB, Wang K, Wang M, Wang X, Warfsmann J, Weissenbach J, White DD, White JD, Wiley GB, Wincker P, Xing Y, Yang L, Yao Z, Ying F, Zhai J, Zhou L, Zuber A, D?nari? J, Dixon RA, May GD, Schwartz DC, Rogers J, Qu?tier F, Town CD, Roe BA
Nature480(7378)520-4(2011 Nov)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LOC25479532 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC25479532 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
| CloneID | OMe160520 | |
| Clone ID Related Accession (Same CDS sequence) | XM_013588050.1 , XM_013588050.2 | |
| Accession Version | XM_013588050.1 | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 927bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2015-08-24 | |
| Organism | Medicago truncatula(barrel medic) | |
| Product | DNA-3-methyladenine glycosylase I | |
| Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_013657540). ##Genome-Annotation-Data-START## Annotation Provider :: JCVI Annotation Version :: Mt4.0v2 Annotation Pipeline :: JCVI Eukaryotic Genome Annotation Pipeline Annotation Method :: EVidenceModeler (EVM), PASA Features Annotated :: Gene; mRNA; CDS; tRNA URL :: http://www.jcvi.org/medicago ##Genome-Annotation-Data-END## | |
1 | ATGTCTAAAG TAAATGCAAA AAGACATGCA ATGGAGAAAA AATCAAGTGA CCAAGAATCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_013443504.1 |
| CDS | 5..931 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_013588050.1 |
1 | ATGTCTAAAG TAAATGCAAA AAGACATGCA ATGGAGAAAA AATCAAGTGA CCAAGAATCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OMe160520 | |
| Clone ID Related Accession (Same CDS sequence) | XM_013588050.1 , XM_013588050.2 | |
| Accession Version | XM_013588050.2 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 927bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2018-04-22 | |
| Organism | Medicago truncatula(barrel medic) | |
| Product | uncharacterized protein LOC25479532 isoform X1 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_013657540.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Apr 23, 2018 this sequence version replaced XM_013588050.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Medicago truncatula Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGTCTAAAG TAAATGCAAA AAGACATGCA ATGGAGAAAA AATCAAGTGA CCAAGAATCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_013443504.1 |
| CDS | 62..988 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_013588050.2 |
1 | ATGTCTAAAG TAAATGCAAA AAGACATGCA ATGGAGAAAA AATCAAGTGA CCAAGAATCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OMe160521 | |
| Clone ID Related Accession (Same CDS sequence) | XM_013588051.1 , XM_013588051.2 | |
| Accession Version | XM_013588051.1 | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 924bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2015-08-24 | |
| Organism | Medicago truncatula(barrel medic) | |
| Product | DNA-3-methyladenine glycosylase I | |
| Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_013657540). ##Genome-Annotation-Data-START## Annotation Provider :: JCVI Annotation Version :: Mt4.0v2 Annotation Pipeline :: JCVI Eukaryotic Genome Annotation Pipeline Annotation Method :: EVidenceModeler (EVM), PASA Features Annotated :: Gene; mRNA; CDS; tRNA URL :: http://www.jcvi.org/medicago ##Genome-Annotation-Data-END## | |
1 | ATGTCTAAAG TAAATGCAAA AAGACATGCA ATGGAGAAAA AATCAAGTGA CCAAGAATCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_013443505.1 |
| CDS | 16..939 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_013588051.1 |
1 | ATGTCTAAAG TAAATGCAAA AAGACATGCA ATGGAGAAAA AATCAAGTGA CCAAGAATCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OMe160521 | |
| Clone ID Related Accession (Same CDS sequence) | XM_013588051.1 , XM_013588051.2 | |
| Accession Version | XM_013588051.2 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 924bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2018-04-22 | |
| Organism | Medicago truncatula(barrel medic) | |
| Product | uncharacterized protein LOC25479532 isoform X2 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_013657540.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Apr 23, 2018 this sequence version replaced XM_013588051.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Medicago truncatula Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGTCTAAAG TAAATGCAAA AAGACATGCA ATGGAGAAAA AATCAAGTGA CCAAGAATCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_013443505.1 |
| CDS | 67..990 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_013588051.2 |
1 | ATGTCTAAAG TAAATGCAAA AAGACATGCA ATGGAGAAAA AATCAAGTGA CCAAGAATCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
An improved genome release (version Mt4.0) for the model legume Medicago truncatula. |
The Medicago genome provides insight into the evolution of rhizobial symbioses. |