LOC100304631 cDNA ORF clone, Ictalurus punctatus(channel catfish)

Gene
Clones
gRNAs

Summary

Gene Symbol	LOC100304631
Entrez Gene ID	100304631
Full Name	CC chemokine SCYA112
Gene Type	protein-coding
Organism	Ictalurus punctatus(channel catfish)

mRNA and Protein(s)

mRNA	Protein	Name
XM_017470960.1	XP_017326449.1	CC chemokine SCYA112 isoform X1
NM_001200195.1	NP_001187124.1	CC chemokine SCYA112

Pathways from BioSystems
Gene Ontology
Bibliography

Related articles in PubMed

Catfish CC chemokines: genomic clustering, duplications, and expression after bacterial infection with Edwardsiella ictaluri.
Peatman E, Bao B, Peng X, Baoprasertkul P, Brady Y, Liu Z
Molecular genetics and genomics : MGG275(3)297-309(2006 Mar)

Multiple CC chemokines in channel catfish and blue catfish as revealed by analysis of expressed sequence tags.
He C, Peatman E, Baoprasertkul P, Kucuktas H, Liu Z
Immunogenetics56(5)379-87(2004 Aug)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following LOC100304631 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC100304631 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OIc39400	NM_001200195.1 Latest version!	Ictalurus punctatus CC chemokine SCYA112 (LOC100304631), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$104.30 $149.00
OIc34077	XM_017470960.1 Latest version!	Ictalurus punctatus CC chemokine SCYA112 (LOC100304631), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$104.30 $149.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

LOC100304631 ( NM_001200195.1 ) cDNA ORF clone, Ictalurus punctatus(channel catfish) -> NP_001187124.1 Ictalurus punctatus CC chemokine SCYA112 (LOC100304631), mRNA.

Price & Availability↑

CloneID	OIc39400
Clone ID Related Accession (Same CDS sequence)	NM_001200195.1
Accession Version	NM_001200195.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 324bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-05-04
Organism	Ictalurus punctatus(channel catfish)
Product	CC chemokine SCYA112
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY555509.1. ##Evidence-Data-START## Transcript exon combination :: AY555509.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00116755, SAMN00739092 [ECO:0000348] ##Evidence-Data-END##

ATGTTCTGTC TCATGACAGA CGCATTGTCG CTTTACAGTA ATTTAAATGG GCCGCTGAAA 
CATGCCTGCT GCGTCAAATA CACTCGCACA CCAGTGAATT TCAATCAGAT CAAAGGTTTC 
GCGGAGCAGA GTTCCCGCGA GGTGTGCCGC ATCGACGCCA TCATATTCCT GACAAAGCGT 
AACCAGAAAG TGTGTGCATC TGCAAAGGAC GAGTGGGTGC GGAACATCCT AGCACGTCTG 
AGCTCTAAAA TGAAAAAAAT GTCTCAGCAA CCTCATAACA AGGTCAACCA TACCCCAACT 
TGGAGTACCT CCACAAATGT GTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001187124.1
CDS	52..375
Translation	MFCLMTDALSLYSNLNGPLKHACCVKYTRTPVNFNQIKGFAEQSSREVCRIDAIIFLTKRNQKVCASAKDEWVRNILARLSSKMKKMSQQPHNKVNHTPTWSTSTNV

Target ORF information:

RefSeq Version	NM_001200195.1
Organism	Ictalurus punctatus(channel catfish)
Definition	Ictalurus punctatus CC chemokine SCYA112 (LOC100304631), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001200195.1

ORF Insert Sequence:

ATGTTCTGTC TCATGACAGA CGCATTGTCG CTTTACAGTA ATTTAAATGG GCCGCTGAAA 
CATGCCTGCT GCGTCAAATA CACTCGCACA CCAGTGAATT TCAATCAGAT CAAAGGTTTC 
GCGGAGCAGA GTTCCCGCGA GGTGTGCCGC ATCGACGCCA TCATATTCCT GACAAAGCGT 
AACCAGAAAG TGTGTGCATC TGCAAAGGAC GAGTGGGTGC GGAACATCCT AGCACGTCTG 
AGCTCTAAAA TGAAAAAAAT GTCTCAGCAA CCTCATAACA AGGTCAACCA TACCCCAACT 
TGGAGTACCT CCACAAATGT GTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

LOC100304631 ( XM_017470960.1 ) cDNA ORF clone, Ictalurus punctatus(channel catfish) -> XP_017326449.1 Ictalurus punctatus CC chemokine SCYA112 (LOC100304631), transcript variant X1, mRNA.

Price & Availability↑

CloneID	OIc34077
Clone ID Related Accession (Same CDS sequence)	XM_017470960.1
Accession Version	XM_017470960.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 354bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-07-05
Organism	Ictalurus punctatus(channel catfish)
Product	CC chemokine SCYA112 isoform X1
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030422.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Ictalurus punctatus Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGTCTCTGA AAGTTTTGAC CAACGTTTTC GCTGGATGCT GGCTTCTGTG CATGTTCTGT 
CTCATGACAG ACGCATATGG GCCGCTGAAA CATGCCTGCT GCGTCAAATA CACTCGCACA 
CCAGTGAATT TCAATCAGAT CAAAGGTTTC GCGGAGCAGA GTTCCCGCGA GGTGTGCCGC 
ATCGACGCCA TCATATTCCT GACAAAGCGT AACCAGAAAG TGTGTGCATC TGCAAAGGAC 
GAGTGGGTGC GGAACATCCT AGCACGTCTG AGCTCTAAAA TGAAAAAAAT GTCTCAGCAA 
CCTCATAACA AGGTCAACCA TACCCCAACT TGGAGTACCT CCACGAATGT GTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_017326449.1
CDS	16..369
Translation	MSLKVLTNVFAGCWLLCMFCLMTDAYGPLKHACCVKYTRTPVNFNQIKGFAEQSSREVCRIDAIIFLTKRNQKVCASAKDEWVRNILARLSSKMKKMSQQPHNKVNHTPTWSTSTNV

Target ORF information:

RefSeq Version	XM_017470960.1
Organism	Ictalurus punctatus(channel catfish)
Definition	Ictalurus punctatus CC chemokine SCYA112 (LOC100304631), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_017470960.1

ORF Insert Sequence:

ATGTCTCTGA AAGTTTTGAC CAACGTTTTC GCTGGATGCT GGCTTCTGTG CATGTTCTGT 
CTCATGACAG ACGCATATGG GCCGCTGAAA CATGCCTGCT GCGTCAAATA CACTCGCACA 
CCAGTGAATT TCAATCAGAT CAAAGGTTTC GCGGAGCAGA GTTCCCGCGA GGTGTGCCGC 
ATCGACGCCA TCATATTCCT GACAAAGCGT AACCAGAAAG TGTGTGCATC TGCAAAGGAC 
GAGTGGGTGC GGAACATCCT AGCACGTCTG AGCTCTAAAA TGAAAAAAAT GTCTCAGCAA 
CCTCATAACA AGGTCAACCA TACCCCAACT TGGAGTACCT CCACGAATGT GTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Catfish CC chemokines: genomic clustering, duplications, and expression after bacterial infection with Edwardsiella ictaluri.
Molecular genetics and genomics : MGG275(3)297-309(2006 Mar)
Peatman E,Bao B,Peng X,Baoprasertkul P,Brady Y,Liu Z

Multiple CC chemokines in channel catfish and blue catfish as revealed by analysis of expressed sequence tags.
Immunogenetics56(5)379-87(2004 Aug)
He C,Peatman E,Baoprasertkul P,Kucuktas H,Liu Z