LOC100304628 cDNA ORF clone, Ictalurus punctatus(channel catfish)

Gene
Clones
gRNAs

Summary

Gene Symbol	LOC100304628
Entrez Gene ID	100304628
Full Name	CC chemokine SCYA102
Gene Type	protein-coding
Organism	Ictalurus punctatus(channel catfish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001200194.1	NP_001187123.1	CC chemokine SCYA102 precursor

Pathways from BioSystems
Gene Ontology
Bibliography

Related articles in PubMed

Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote.
Liu S, Zhang Y, Zhou Z, Waldbieser G, Sun F, Lu J, Zhang J, Jiang Y, Zhang H, Wang X, Rajendran KV, Khoo L, Kucuktas H, Peatman E, Liu Z
BMC genomics13595(2012 Nov)

Catfish CC chemokines: genomic clustering, duplications, and expression after bacterial infection with Edwardsiella ictaluri.
Peatman E, Bao B, Peng X, Baoprasertkul P, Brady Y, Liu Z
Molecular genetics and genomics : MGG275(3)297-309(2006 Mar)

Multiple CC chemokines in channel catfish and blue catfish as revealed by analysis of expressed sequence tags.
He C, Peatman E, Baoprasertkul P, Kucuktas H, Liu Z
Immunogenetics56(5)379-87(2004 Aug)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following LOC100304628 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC100304628 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OIc39346	NM_001200194.1 Latest version!	Ictalurus punctatus CC chemokine SCYA102 (LOC100304628), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$104.30 $149.00

ORF Online Only Promotion

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

LOC100304628 ( NM_001200194.1 ) cDNA ORF clone, Ictalurus punctatus(channel catfish) -> NP_001187123.1 Ictalurus punctatus CC chemokine SCYA102 (LOC100304628), mRNA.

Price & Availability↑

CloneID	OIc39346
Clone ID Related Accession (Same CDS sequence)	NM_001200194.1
Accession Version	NM_001200194.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 303bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-05-04
Organism	Ictalurus punctatus(channel catfish)
Product	CC chemokine SCYA102 precursor
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY555499.1. ##Evidence-Data-START## Transcript exon combination :: AY555499.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00116755, SAMN00739092 [ECO:0000348] ##Evidence-Data-END##

ATGCTGGACT GCAATAAAAA CTGGTACACA TTTTTGGTTG TGCTGCTTGC ACTTTTTGGA 
TGCATCACTA CTGCACCTGG TAACTACCGT CGACCTACCA AAGTTGGTCT CGTGTGCTGT 
GAGGCAGTCT CCAAAGCACT TATACCATCT AACATAAAGC TCACTGCATA CAAGCGCCAG 
AATGCCCTGA ATCCTTGTGT GGAAGCTATC ATTTTTTTCT CCATGAATGA AAAATATTGC 
TCTGACCCTA ATGCACGCTG GATCCCAAAG AAACTGAGAG GTTTGACAGA GATCAAGGAA 
TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001187123.1
CDS	28..330
Translation	MLDCNKNWYTFLVVLLALFGCITTAPGNYRRPTKVGLVCCEAVSKALIPSNIKLTAYKRQNALNPCVEAIIFFSMNEKYCSDPNARWIPKKLRGLTEIKE

Target ORF information:

RefSeq Version	NM_001200194.1
Organism	Ictalurus punctatus(channel catfish)
Definition	Ictalurus punctatus CC chemokine SCYA102 (LOC100304628), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001200194.1

ORF Insert Sequence:

ATGCTGGACT GCAATAAAAA CTGGTACACA TTTTTGGTTG TGCTGCTTGC ACTTTTTGGA 
TGCATCACTA CTGCACCTGG TAACTACCGT CGACCTACCA AAGTTGGTCT CGTGTGCTGT 
GAGGCAGTCT CCAAAGCACT TATACCATCT AACATAAAGC TCACTGCATA CAAGCGCCAG 
AATGCCCTGA ATCCTTGTGT GGAAGCTATC ATTTTTTTCT CCATGAATGA AAAATATTGC 
TCTGACCCTA ATGCACGCTG GATCCCAAAG AAACTGAGAG GTTTGACAGA GATCAAGGAA 
TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote.
BMC genomics13595(2012 Nov)
Liu S,Zhang Y,Zhou Z,Waldbieser G,Sun F,Lu J,Zhang J,Jiang Y,Zhang H,Wang X,Rajendran KV,Khoo L,Kucuktas H,Peatman E,Liu Z

Catfish CC chemokines: genomic clustering, duplications, and expression after bacterial infection with Edwardsiella ictaluri.
Molecular genetics and genomics : MGG275(3)297-309(2006 Mar)
Peatman E,Bao B,Peng X,Baoprasertkul P,Brady Y,Liu Z

Multiple CC chemokines in channel catfish and blue catfish as revealed by analysis of expressed sequence tags.
Immunogenetics56(5)379-87(2004 Aug)
He C,Peatman E,Baoprasertkul P,Kucuktas H,Liu Z