LOC102311695 cDNA ORF clone, Haplochromis burtoni(Burton's mouthbrooder)

Gene
Clones
gRNAs

Summary

Gene Symbol	LOC102311695
Entrez Gene ID	102311695
Full Name	interferon-induced protein 44-like
Gene Type	protein-coding
Organism	Haplochromis burtoni(Burton's mouthbrooder)

mRNA and Protein(s)

mRNA	Protein	Name
XM_005953058.2	XP_005953120.2	interferon-induced protein 44-like

Pathways from BioSystems
Gene Ontology
Bibliography

Related articles in PubMed

Comparative transcriptomics of Eastern African cichlid fishes shows signs of positive selection and a large contribution of untranslated regions to genetic diversity.
Baldo L, Santos ME, Salzburger W
Genome biology and evolution3443-55(2011)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following LOC102311695 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC102311695 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OHa36752	XM_005953058.2 Latest version!	Haplochromis burtoni interferon-induced protein 44-like (LOC102311695), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$174.30 $249.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

LOC102311695 ( XM_005953058.2 ) cDNA ORF clone, Haplochromis burtoni(Burton's mouthbrooder) -> XP_005953120.2 Haplochromis burtoni interferon-induced protein 44-like (LOC102311695), mRNA.

Price & Availability↑

CloneID	OHa36752
Clone ID Related Accession (Same CDS sequence)	XM_005953058.2
Accession Version	XM_005953058.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 891bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2015-09-28
Organism	Haplochromis burtoni(Burton's mouthbrooder)
Product	interferon-induced protein 44-like
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_005182067.1) and transcript sequence (JL485203.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 29, 2015 this sequence version replaced XM_005953058.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Haplochromis burtoni Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 546 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END##

ATGAAACTTT TTCAGTTTAA ACGCCCAGCA CGCCCTGTTT CACCTCCTCT GTTAGAGGTA 
GACGAGAGGA TCATACCATG GGGTGAAAAA GAGCGAGACC GAGACCTGCA GCTTGTCAGA 
GATTACAAGC CTCACAAAGA TGTCCAGCAT CTCAGAATTA TGCTTTATGG ACCACCAGGT 
GCTGGAAAGT CCAGCTTCAT CAACTCTGTG GACAGTACTT TAAGAGGCAA AATCGCAACT 
CGAGCTTCAG CAGACGCAAC CTCTGGTGTC AGTTTCACTA ATGCATACAG GACATATAAA 
ATTCACAGAG AAAATCCAAG AACCTTTTAT CCTTTTGCAT TCAATGACAC CATGGGCCTG 
GAGAGGGGCG CTGAGGGAGG AATTCTTGTG GAAGACATCA AACTTGCCAT GAGTGGACAT 
GTAAAAGAAG GTTACAGGTT CAACCCCAAA TGTCACTTGT TTGAAACGGA TCCTGACTAC 
AACAGTTCTC CTACTTTAGA TGACAAAGTC CACATTCTGG TTTTAGTCAT TCCAGCTGAC 
ACAGTGAGCA TAATCAGTGT TGAAACTCGG AGGAAGATGA AAGAAGTCAG AGCAGCAGCT 
CGTGACAAAG GCATCCCACA AATAGCTCTC ATGACTAAAA TTGATGAAGC CTGTCCTGAA 
GTCAAAAAAG ACATAAAGAA CGCCTACAAG AGCAAGCACA TGAATAAGCT GATGGACACA 
GTGAACGTGG ACCTGGGTAT TCCACTGAAC TGCATCTTCC TCGTGAAGAA CTACCACAAA 
GAAATTTACA CGAAGGACAA CATGGATTCA CTGATACTGT GTGCACTGAA AAAGATCATT 
GACTATGGAG AGGACTACCT GAATGACCAG AATGATCCAG ATGATGTGTG A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_005953120.2
CDS	144..1034
Translation	MKLFQFKRPARPVSPPLLEVDERIIPWGEKERDRDLQLVRDYKPHKDVQHLRIMLYGPPGAGKSSFINSVDSTLRGKIATRASADATSGVSFTNAYRTYKIHRENPRTFYPFAFNDTMGLERGAEGGILVEDIKLAMSGHVKEGYRFNPKCHLFETDPDYNSSPTLDDKVHILVLVIPADTVSIISVETRRKMKEVRAAARDKGIPQIALMTKIDEACPEVKKDIKNAYKSKHMNKLMDTVNVDLGIPLNCIFLVKNYHKEIYTKDNMDSLILCALKKIIDYGEDYLNDQNDPDDV

Target ORF information:

RefSeq Version	XM_005953058.2
Organism	Haplochromis burtoni(Burton's mouthbrooder)
Definition	Haplochromis burtoni interferon-induced protein 44-like (LOC102311695), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_005953058.2

ORF Insert Sequence:

ATGAAACTTT TTCAGTTTAA ACGCCCAGCA CGCCCTGTTT CACCTCCTCT GTTAGAGGTA 
GACGAGAGGA TCATACCATG GGGTGAAAAA GAGCGAGACC GAGACCTGCA GCTTGTCAGA 
GATTACAAGC CTCACAAAGA TGTCCAGCAT CTCAGAATTA TGCTTTATGG ACCACCAGGT 
GCTGGAAAGT CCAGCTTCAT CAACTCTGTG GACAGTACTT TAAGAGGCAA AATCGCAACT 
CGAGCTTCAG CAGACGCAAC CTCTGGTGTC AGTTTCACTA ATGCATACAG GACATATAAA 
ATTCACAGAG AAAATCCAAG AACCTTTTAT CCTTTTGCAT TCAATGACAC CATGGGCCTG 
GAGAGGGGCG CTGAGGGAGG AATTCTTGTG GAAGACATCA AACTTGCCAT GAGTGGACAT 
GTAAAAGAAG GTTACAGGTT CAACCCCAAA TGTCACTTGT TTGAAACGGA TCCTGACTAC 
AACAGTTCTC CTACTTTAGA TGACAAAGTC CACATTCTGG TTTTAGTCAT TCCAGCTGAC 
ACAGTGAGCA TAATCAGTGT TGAAACTCGG AGGAAGATGA AAGAAGTCAG AGCAGCAGCT 
CGTGACAAAG GCATCCCACA AATAGCTCTC ATGACTAAAA TTGATGAAGC CTGTCCTGAA 
GTCAAAAAAG ACATAAAGAA CGCCTACAAG AGCAAGCACA TGAATAAGCT GATGGACACA 
GTGAACGTGG ACCTGGGTAT TCCACTGAAC TGCATCTTCC TCGTGAAGAA CTACCACAAA 
GAAATTTACA CGAAGGACAA CATGGATTCA CTGATACTGT GTGCACTGAA AAAGATCATT 
GACTATGGAG AGGACTACCT GAATGACCAG AATGATCCAG ATGATGTGTG A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Comparative transcriptomics of Eastern African cichlid fishes shows signs of positive selection and a large contribution of untranslated regions to genetic diversity.
Genome biology and evolution3443-55(2011)
Baldo L,Santos ME,Salzburger W