dpcd cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	dpcd
Entrez Gene ID	751660
Full Name	deleted in primary ciliary dyskinesia homolog (mouse)
Synonyms	zgc:153412
General protein information	Preferred Names deleted in primary ciliary dyskinesia homolog (mouse) Names protein DPCD deleted in a mouse model of primary ciliary dyskinesia
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
XM_017355734.1	XP_017211223.1	protein DPCD isoform X1
NM_001045377.1	NP_001038842.1	protein DPCD

Pathways from BioSystems

Homologies

Canis lupus familiaris (dog)	DPCD	XP_534994.1
Drosophila melanogaster (fruit fly)	CG13901	NP_612061.2
Mus musculus (house mouse)	Dpcd	NP_766227.1
Gallus gallus (chicken)	DPCD	NP_001264295.1
Xenopus tropicalis (tropical clawed frog)	dpcd	NP_001096275.1
	LOC712082	XP_002808557.1
Bos taurus (cattle)	DPCD	NP_001069213.1
Anopheles gambiae (African malaria mosquito)	AgaP_AGAP012517	XP_307420.3
Homo sapiens (human)	DPCD	NP_056263.1
Pan troglodytes (chimpanzee)	DPCD	XP_001170182.1
Danio rerio (zebrafish)	dpcd	NP_001038842.1

Gene Ontology
Bibliography

Related articles in PubMed

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

Evolution of developmental regulation in the vertebrate FgfD subfamily.
Jovelin R, Yan YL, He X, Catchen J, Amores A, Canestro C, Yokoi H, Postlethwait JH
Journal of experimental zoology. Part B, Molecular and developmental evolution314(1)33-56(2010 Jan)

Comparative genomics of Lbx loci reveals conservation of identical Lbx ohnologs in bony vertebrates.
Wotton KR, Weierud FK, Dietrich S, Lewis KE
BMC evolutionary biology8171(2008 Jun)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following dpcd gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the dpcd cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa03445	NM_001045377.1 Latest version!	Danio rerio deleted in primary ciliary dyskinesia homolog (mouse) (dpcd), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$174.30 $249.00
ODa53735	XM_017355734.1 Latest version!	Danio rerio deleted in primary ciliary dyskinesia homolog (mouse) (dpcd), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$104.30 $149.00

ORF Online Only Promotion

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2-4 Clone	40% OFF
5 or more Clone	50% OFF
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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

dpcd ( NM_001045377.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001038842.1 Danio rerio deleted in primary ciliary dyskinesia homolog (mouse) (dpcd), mRNA.

Price & Availability↑

CloneID	ODa03445
Clone ID Related Accession (Same CDS sequence)	NM_001045377.1
Accession Version	NM_001045377.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 603bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2018-11-23
Organism	Danio rerio(zebrafish)
Product	protein DPCD
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC122278.1. ##Evidence-Data-START## Transcript exon combination :: BC122278.1, EH433201.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350] ##Evidence-Data-END##

ATGGCTGTTC AACAGTGGGC TGATGCTCTT AAAAAAGCCA AGAAAACTGC TTTAATATCC 
GATGGGAAAA GGAAAGTTCA TTATCAGTTT GAGGATGGCA ATGAGATGGC TGAGGAGTAT 
GACCTAAAAA CAGATGAGCT TGTCATGCGA AAGTGGCGAC ATAAAACCAC CTTTGGAGGA 
CAGGGGCAGT GGACTTTGGA GGTTGGTGAA ACAAACCCAA CTGGGGCTAC ATCTGATTTA 
ATAAAAGAGA ACAGTTCAAA TCCACTATTT ATGCGCCGGG ACACAAAGAC AAGTTTCCAG 
TGGAGGATCC GTAACATTTC TTACCCTTTA GAAGTCTACA GTGTGACAGC TGAGCCAATG 
GAAAGATGTT GTGTCATTCG GACCTCGAAC AAAAAGTACT ATAAGAAGTT CAGCATTCCA 
GATCTCGAGC GTTGCCAGTT GCCTTTGGAG AGCACAGCCT TGAGTTTCAC CCACGCCAAC 
AACACTTTAA TCATCAGCTA CAAGAAGCCC AAAGAGATTT TAACGCTGGA ACAGGAGCTG 
CTTGGGGAGC TGAAGAAACT GAAGGGGACA AGTGAAGGAG ATATTGACTG TAAAACTCAG 
TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001038842.1
CDS	223..825
Translation	MAVQQWADALKKAKKTALISDGKRKVHYQFEDGNEMAEEYDLKTDELVMRKWRHKTTFGGQGQWTLEVGETNPTGATSDLIKENSSNPLFMRRDTKTSFQWRIRNISYPLEVYSVTAEPMERCCVIRTSNKKYYKKFSIPDLERCQLPLESTALSFTHANNTLIISYKKPKEILTLEQELLGELKKLKGTSEGDIDCKTQ

Target ORF information:

RefSeq Version	NM_001045377.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio deleted in primary ciliary dyskinesia homolog (mouse) (dpcd), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001045377.1

ORF Insert Sequence:

ATGGCTGTTC AACAGTGGGC TGATGCTCTT AAAAAAGCCA AGAAAACTGC TTTAATATCC 
GATGGGAAAA GGAAAGTTCA TTATCAGTTT GAGGATGGCA ATGAGATGGC TGAGGAGTAT 
GACCTAAAAA CAGATGAGCT TGTCATGCGA AAGTGGCGAC ATAAAACCAC CTTTGGAGGA 
CAGGGGCAGT GGACTTTGGA GGTTGGTGAA ACAAACCCAA CTGGGGCTAC ATCTGATTTA 
ATAAAAGAGA ACAGTTCAAA TCCACTATTT ATGCGCCGGG ACACAAAGAC AAGTTTCCAG 
TGGAGGATCC GTAACATTTC TTACCCTTTA GAAGTCTACA GTGTGACAGC TGAGCCAATG 
GAAAGATGTT GTGTCATTCG GACCTCGAAC AAAAAGTACT ATAAGAAGTT CAGCATTCCA 
GATCTCGAGC GTTGCCAGTT GCCTTTGGAG AGCACAGCCT TGAGTTTCAC CCACGCCAAC 
AACACTTTAA TCATCAGCTA CAAGAAGCCC AAAGAGATTT TAACGCTGGA ACAGGAGCTG 
CTTGGGGAGC TGAAGAAACT GAAGGGGACA AGTGAAGGAG ATATTGACTG TAAAACTCAG 
TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

dpcd ( XM_017355734.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> XP_017211223.1 Danio rerio deleted in primary ciliary dyskinesia homolog (mouse) (dpcd), transcript variant X1, mRNA.

Price & Availability↑

CloneID	ODa53735
Clone ID Related Accession (Same CDS sequence)	XM_017355734.1
Accession Version	XM_017355734.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 333bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-06-14
Organism	Danio rerio(zebrafish)
Product	protein DPCD isoform X1
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007112.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGCGCCGGG ACACAAAGAC AAGTTTCCAG TGGAGGATCC GTAACATTTC TTACCCTTTA 
GAAGTCTACA GTGTGACAGC TGAGCCAATG GAAAGATGTT GTGTCATTCG GACCTCGAAC 
AAAAAGTACT ATAAGAAGTT CAGCATTCCA GATCTCGAGC GTTGCCAGTT GCCTTTGGAG 
AGCACAGCCT TGAGTTTCAC CCACGCCAAC AACACTTTAA TCATCAGCTA CAAGAAGCCC 
AAAGAGATTT TAACGCTGGA ACAGGAGCTG CTTGGGGAGC TGAAGAAACT GAAGGGGACA 
AGTGAAGGAG ATATTGACTG TAAAACTCAG TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_017211223.1
CDS	274..606
Translation	MRRDTKTSFQWRIRNISYPLEVYSVTAEPMERCCVIRTSNKKYYKKFSIPDLERCQLPLESTALSFTHANNTLIISYKKPKEILTLEQELLGELKKLKGTSEGDIDCKTQ

Target ORF information:

RefSeq Version	XM_017355734.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio deleted in primary ciliary dyskinesia homolog (mouse) (dpcd), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_017355734.1

ORF Insert Sequence:

ATGCGCCGGG ACACAAAGAC AAGTTTCCAG TGGAGGATCC GTAACATTTC TTACCCTTTA 
GAAGTCTACA GTGTGACAGC TGAGCCAATG GAAAGATGTT GTGTCATTCG GACCTCGAAC 
AAAAAGTACT ATAAGAAGTT CAGCATTCCA GATCTCGAGC GTTGCCAGTT GCCTTTGGAG 
AGCACAGCCT TGAGTTTCAC CCACGCCAAC AACACTTTAA TCATCAGCTA CAAGAAGCCC 
AAAGAGATTT TAACGCTGGA ACAGGAGCTG CTTGGGGAGC TGAAGAAACT GAAGGGGACA 
AGTGAAGGAG ATATTGACTG TAAAACTCAG TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

Evolution of developmental regulation in the vertebrate FgfD subfamily.
Journal of experimental zoology. Part B, Molecular and developmental evolution314(1)33-56(2010 Jan)
Jovelin R,Yan YL,He X,Catchen J,Amores A,Canestro C,Yokoi H,Postlethwait JH

Comparative genomics of Lbx loci reveals conservation of identical Lbx ohnologs in bony vertebrates.
BMC evolutionary biology8171(2008 Jun)
Wotton KR,Weierud FK,Dietrich S,Lewis KE