cabp1a cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	cabp1a
Entrez Gene ID	449789
Full Name	calcium binding protein 1a
Synonyms	cabp1,zgc:101878
General protein information	Preferred Names calcium binding protein 1a Names calcium-binding protein 1 calcium binding protein 1
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001328365.1	NP_001315294.1	calcium-binding protein 1 isoform 2
NM_001005962.2	NP_001005962.1	calcium-binding protein 1 isoform 1

Pathways from BioSystems

Homologies

Rattus norvegicus (Norway rat)	Cabp1	NP_001028848.1
	LOC697825	XP_002808041.1
Homo sapiens (human)	CABP1	NP_001028849.1
Danio rerio (zebrafish)	cabp1a	NP_001005962.1

Gene Ontology
Bibliography

Related articles in PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

Characterization of the calcium binding protein family in zebrafish.
Di Donato V, Auer TO, Duroure K, Del Bene F
PloS one8(1)e53299(2013)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following cabp1a gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the cabp1a cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa53385	NM_001005962.2 Latest version!	Danio rerio calcium binding protein 1a (cabp1a), transcript variant 1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$104.30 $149.00
ODa14475	NM_001328365.1 Latest version!	Danio rerio calcium binding protein 1a (cabp1a), transcript variant 2, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	TBD	$258.30 $369.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

cabp1a ( NM_001005962.2 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001005962.1 Danio rerio calcium binding protein 1a (cabp1a), transcript variant 1, mRNA.

Price & Availability↑

CloneID	ODa53385
Clone ID Related Accession (Same CDS sequence)	NM_001005962.2
Accession Version	NM_001005962.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 561bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-08-05
Organism	Danio rerio(zebrafish)
Product	calcium-binding protein 1 isoform 1
Comment	Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EH456620.1 and CR376731.13. On Jun 16, 2016 this sequence version replaced NM_001005962.1. ##Evidence-Data-START## Transcript exon combination :: BC083305.1, GFIL01002808.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350] ##Evidence-Data-END##

ATGGCTGCTT TGACTGGTCT GGACGCACCA CTGGTTGAAG GTTTTCTGGT GGTAAAACCA 
ACTTCAGAGG AACTTAATTT CCTCGACAGC CTGGATTTTA TTAATCGAGA GTTGAGACCT 
GAGGAGATTG ATGAGCTGCG AGACGCGTTT AAGGAGTTTG ATAAAGATAA AGATGGCTTC 
ATCAGCTGTA AAGACCTGGG AAACTGCATG AGGACTATGG GATACATGCC AACTGAGATG 
GAGCTAATAG AGCTGAGCCA ACAGATCAAT ATGAACTTAG GTGGCCATGT GGACTTCGAG 
GATTTTGTGG AGTTGATGGG ACCTAAACTT CTTGCCGAGA CAGCAGACAT GATCGGCATA 
AAGGAGCTGA GAAATGCCTT CAAAGAGTTT GACACAAATG GAGATGGTGA AATAAGCACA 
GGAGAGCTGA GGGAAGCAAT GAGGAAACTG CTGGGACAAC AGGTCGGTCA TCGAGACCTG 
GAGGACATAC TGAGAGACAT TGACTTGAAT GGAGATGGGA GAGTGGATTT TGAAGAGTTT 
GTGCGAATGG TGTCCCGCTG A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001005962.1
CDS	260..820
Translation	MAALTGLDAPLVEGFLVVKPTSEELNFLDSLDFINRELRPEEIDELRDAFKEFDKDKDGFISCKDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFEDFVELMGPKLLAETADMIGIKELRNAFKEFDTNGDGEISTGELREAMRKLLGQQVGHRDLEDILRDIDLNGDGRVDFEEFVRMVSR

Target ORF information:

RefSeq Version	NM_001005962.2
Organism	Danio rerio(zebrafish)
Definition	Danio rerio calcium binding protein 1a (cabp1a), transcript variant 1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001005962.2

ORF Insert Sequence:

ATGGCTGCTT TGACTGGTCT GGACGCACCA CTGGTTGAAG GTTTTCTGGT GGTAAAACCA 
ACTTCAGAGG AACTTAATTT CCTCGACAGC CTGGATTTTA TTAATCGAGA GTTGAGACCT 
GAGGAGATTG ATGAGCTGCG AGACGCGTTT AAGGAGTTTG ATAAAGATAA AGATGGCTTC 
ATCAGCTGTA AAGACCTGGG AAACTGCATG AGGACTATGG GATACATGCC AACTGAGATG 
GAGCTAATAG AGCTGAGCCA ACAGATCAAT ATGAACTTAG GTGGCCATGT GGACTTCGAG 
GATTTTGTGG AGTTGATGGG ACCTAAACTT CTTGCCGAGA CAGCAGACAT GATCGGCATA 
AAGGAGCTGA GAAATGCCTT CAAAGAGTTT GACACAAATG GAGATGGTGA AATAAGCACA 
GGAGAGCTGA GGGAAGCAAT GAGGAAACTG CTGGGACAAC AGGTCGGTCA TCGAGACCTG 
GAGGACATAC TGAGAGACAT TGACTTGAAT GGAGATGGGA GAGTGGATTT TGAAGAGTTT 
GTGCGAATGG TGTCCCGCTG A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

cabp1a ( NM_001328365.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001315294.1 Danio rerio calcium binding protein 1a (cabp1a), transcript variant 2, mRNA.

Price & Availability↑

CloneID	ODa14475
Clone ID Related Accession (Same CDS sequence)	NM_001328365.1
Accession Version	NM_001328365.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1140bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-08-05
Organism	Danio rerio(zebrafish)
Product	calcium-binding protein 1 isoform 2
Comment	Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CR388077.11, EH456620.1 and CR376731.13. On Jun 16, 2016 this sequence version replaced XM_005167377.2. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: GFIL01008154.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350] ##Evidence-Data-END##

ATGAGTTTCA CGCTCCCCAA AAGCGAATCG ACGACCTCCT TGCTGAGATC CTCTGCACCG 
GCCAGGAGCG CGGTCCAGCC GCCCGATCAT CGGCGACCGC AGCATCAGCG CTCCGCGGCG 
GCATCTGGAG CGGAGCCGGC GGACTGCGAT GCGAGCTCGC GGAGACCCCT GTGTCACCCC 
TCACTGGTCG GTACCCGGAA TAGCGCAGAG AAGAGCCACC CACAACCCTC CCACGGACAC 
GCTCTCTCCG CGGCTCGCAG TCAGGAGGAC CTGTCGGAGC TTCCAGGTGG AGAAGAGCGC 
AAGACAACCA GGCGACATCA CCATCATCAC CATCACCATC ATCACCACCA CAATCGTCAT 
CATCACCATC ACCGCCACCG CTCCACCCGG GACGACCTGC CCCAGGAGCC CCGACCCAAG 
CACTCTCACG CCGCTCGCAT GCCCAGCAGA ACTCAGTCTT TCTCCGAGTC TAGAGACGAG 
ACGTCGCTCT TTTTTGAGTC TCCTCCGCCG GCTCGACCGG GCTCCTCCAC GAGCAGAGAG 
GTGGGTCCAG CCTCCACCGC CTCATCTTCG CCGGTGCCCG CGTCCTCCAG CCGCTCCTCC 
CGGAGGTCAG CGAGGTCCAG CGCAGCATCT TCCGAAGCAG ACTTCAACCT GCGACCCTTT 
CTCAGCTCAG TGTTTGGACA GAATCGAGAG TTGAGACCTG AGGAGATTGA TGAGCTGCGA 
GACGCGTTTA AGGAGTTTGA TAAAGATAAA GATGGCTTCA TCAGCTGTAA AGACCTGGGA 
AACTGCATGA GGACTATGGG ATACATGCCA ACTGAGATGG AGCTAATAGA GCTGAGCCAA 
CAGATCAATA TGAACTTAGG TGGCCATGTG GACTTCGAGG ATTTTGTGGA GTTGATGGGA 
CCTAAACTTC TTGCCGAGAC AGCAGACATG ATCGGCATAA AGGAGCTGAG AAATGCCTTC 
AAAGAGTTTG ACACAAATGG AGATGGTGAA ATAAGCACAG GAGAGCTGAG GGAAGCAATG 
AGGAAACTGC TGGGACAACA GGTCGGTCAT CGAGACCTGG AGGACATACT GAGAGACATT 
GACTTGAATG GAGATGGGAG AGTGGATTTT GAAGAGTTTG TGCGAATGGT GTCCCGCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001315294.1
CDS	633..1772
Translation	MSFTLPKSESTTSLLRSSAPARSAVQPPDHRRPQHQRSAAASGAEPADCDASSRRPLCHPSLVGTRNSAEKSHPQPSHGHALSAARSQEDLSELPGGEERKTTRRHHHHHHHHHHHHNRHHHHHRHRSTRDDLPQEPRPKHSHAARMPSRTQSFSESRDETSLFFESPPPARPGSSTSREVGPASTASSSPVPASSSRSSRRSARSSAASSEADFNLRPFLSSVFGQNRELRPEEIDELRDAFKEFDKDKDGFISCKDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFEDFVELMGPKLLAETADMIGIKELRNAFKEFDTNGDGEISTGELREAMRKLLGQQVGHRDLEDILRDIDLNGDGRVDFEEFVRMVSR

Target ORF information:

RefSeq Version	NM_001328365.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio calcium binding protein 1a (cabp1a), transcript variant 2, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001328365.1

ORF Insert Sequence:

ATGAGTTTCA CGCTCCCCAA AAGCGAATCG ACGACCTCCT TGCTGAGATC CTCTGCACCG 
GCCAGGAGCG CGGTCCAGCC GCCCGATCAT CGGCGACCGC AGCATCAGCG CTCCGCGGCG 
GCATCTGGAG CGGAGCCGGC GGACTGCGAT GCGAGCTCGC GGAGACCCCT GTGTCACCCC 
TCACTGGTCG GTACCCGGAA TAGCGCAGAG AAGAGCCACC CACAACCCTC CCACGGACAC 
GCTCTCTCCG CGGCTCGCAG TCAGGAGGAC CTGTCGGAGC TTCCAGGTGG AGAAGAGCGC 
AAGACAACCA GGCGACATCA CCATCATCAC CATCACCATC ATCACCACCA CAATCGTCAT 
CATCACCATC ACCGCCACCG CTCCACCCGG GACGACCTGC CCCAGGAGCC CCGACCCAAG 
CACTCTCACG CCGCTCGCAT GCCCAGCAGA ACTCAGTCTT TCTCCGAGTC TAGAGACGAG 
ACGTCGCTCT TTTTTGAGTC TCCTCCGCCG GCTCGACCGG GCTCCTCCAC GAGCAGAGAG 
GTGGGTCCAG CCTCCACCGC CTCATCTTCG CCGGTGCCCG CGTCCTCCAG CCGCTCCTCC 
CGGAGGTCAG CGAGGTCCAG CGCAGCATCT TCCGAAGCAG ACTTCAACCT GCGACCCTTT 
CTCAGCTCAG TGTTTGGACA GAATCGAGAG TTGAGACCTG AGGAGATTGA TGAGCTGCGA 
GACGCGTTTA AGGAGTTTGA TAAAGATAAA GATGGCTTCA TCAGCTGTAA AGACCTGGGA 
AACTGCATGA GGACTATGGG ATACATGCCA ACTGAGATGG AGCTAATAGA GCTGAGCCAA 
CAGATCAATA TGAACTTAGG TGGCCATGTG GACTTCGAGG ATTTTGTGGA GTTGATGGGA 
CCTAAACTTC TTGCCGAGAC AGCAGACATG ATCGGCATAA AGGAGCTGAG AAATGCCTTC 
AAAGAGTTTG ACACAAATGG AGATGGTGAA ATAAGCACAG GAGAGCTGAG GGAAGCAATG 
AGGAAACTGC TGGGACAACA GGTCGGTCAT CGAGACCTGG AGGACATACT GAGAGACATT 
GACTTGAATG GAGATGGGAG AGTGGATTTT GAAGAGTTTG TGCGAATGGT GTCCCGCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

Characterization of the calcium binding protein family in zebrafish.
PloS one8(1)e53299(2013)
Di Donato V,Auer TO,Duroure K,Del Bene F