clta cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	clta
Entrez Gene ID	406318
Full Name	clathrin, light chain A
Synonyms	wu:fb61d08,wu:fj48d06,zgc:73358
General protein information	Preferred Names clathrin, light chain A Names clathrin light chain A clathrin, light chain (Lca) clathrin, light polypeptide (Lca)
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_213045.1	NP_998210.1	clathrin light chain A
XM_005159806.3	XP_005159863.1	clathrin light chain A isoform X2
XM_005159805.3	XP_005159862.1	clathrin light chain A isoform X1

Pathways from BioSystems

Homologies

Drosophila melanogaster (fruit fly)	Clc	NP_524178.2
Canis lupus familiaris (dog)	CLTA	XP_003639442.1
Mus musculus (house mouse)	Clta	NP_001073854.1
Rattus norvegicus (Norway rat)	Clta	NP_114180.1
Xenopus tropicalis (tropical clawed frog)	clta	NP_988995.1
Pan troglodytes (chimpanzee)	CLTA	XP_001168687.1
Anopheles gambiae (African malaria mosquito)	AgaP_AGAP010608	XP_558141.3
Homo sapiens (human)	CLTA	NP_009027.1
Bos taurus (cattle)	CLTA	NP_776447.1
Danio rerio (zebrafish)	clta	NP_998210.1
Gallus gallus (chicken)	CLTA	NP_001034402.1

Gene Ontology
Bibliography

Related articles in PubMed

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

Novel transgenic lines to fluorescently label clathrin and caveolin endosomes in live zebrafish.
Arbizzani F, Mayrhofer M, Mione M
Zebrafish12(2)202-3(2015 Apr)

Synaptic vesicles are "primed" for fast clathrin-mediated endocytosis at the ribbon synapse.
Pelassa I, Zhao C, Pasche M, Odermatt B, Lagnado L
Frontiers in molecular neuroscience791(2014)

Zebrafish miR-1 and miR-133 shape muscle gene expression and regulate sarcomeric actin organization.
Mishima Y, Abreu-Goodger C, Staton AA, Stahlhut C, Shou C, Cheng C, Gerstein M, Enright AJ, Giraldez AJ
Genes & development23(5)619-32(2009 Mar)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The development of transgenic zebrafish lines expressing CLTA fused to dsRed and CAV1 fused to GFP is reported.
Title: Novel transgenic lines to fluorescently label clathrin and caveolin endosomes in live zebrafish.

The following clta gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the clta cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)
ODa03739	NM_213045.1 Latest version!	Danio rerio clathrin, light chain A (clta), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$174.30 $249.00
ODa05514	XM_005159805.3 Latest version!	Danio rerio clathrin, light chain A (clta), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$174.30 $249.00
ODa05515	XM_005159806.3 Latest version!	Danio rerio clathrin, light chain A (clta), transcript variant X2, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$174.30 $249.00

ORF Online Only Promotion

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

clta ( NM_213045.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_998210.1 Danio rerio clathrin, light chain A (clta), mRNA.

Price & Availability↑

CloneID	ODa03739
Clone ID Related Accession (Same CDS sequence)	NM_213045.1
Accession Version	NM_213045.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 708bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2018-11-23
Organism	Danio rerio(zebrafish)
Product	clathrin light chain A
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC060939.1. ##Evidence-Data-START## Transcript exon combination :: EH436466.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END##

ATGGACGATT TCGATATGCT CAGTGCCCCT CAAGGAAGCG CAGGGAACGG TGTCGGGGCA 
GACGAGGACC CGGCGGCGGC ATTTCTGGCC CAGCAAGAGA GCGAGATCGC TGGCATCGAG 
AATGACGAGG GCTTCAGCAT CCTGGACAGC GGAGATGTGC CTTCGTCCCT GAGCCAAGAC 
CAGGACGGTG GAGCAATGAA TGGAGATCTG CATGGGGAGA GTAATGGCCC TTCAGATGTG 
TACGCGGCCA TCTCCAGTGT GGATCGGTTG CAGGCTGAGC CGGAGAGCTT GAGGAAGTGG 
AGAGAGGAGC AGCGAGATAG GCTGGAGGAG CTCGATGCGA ACTCGCGTAA ACAGGAGGCC 
GAGTGGAAAG AGAAGGCAAA GCTGGAGCTG GAGGAATGGC ACACCAGGCA GAACGAGCAG 
CTGGAGAAAA CCAAAGTCAA CAACAGGGTG CTGGATGAGG ATTTCTACAA ACAACCCTTC 
GCTGATCTGA TTGGTTATGT CACTCACATT AACCATCCTT GCTACCGCCT AGACCAGGCG 
GCTGAGGAAG CCATGGTGTC GGAGCTGGAT GAAAACAGTC CTGGCACAGA ATGGGAACGT 
GTGGCGCGTC TTTGCGATTT CAACCCTAAA TCCAGCAAGC AGGCAAAGGA TGTGTCCCGC 
ATGCGTTCAG TGCTCATCTC TCTTAAACAG GCTCCGCTCG TCCGCTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_998210.1
CDS	62..769
Translation	MDDFDMLSAPQGSAGNGVGADEDPAAAFLAQQESEIAGIENDEGFSILDSGDVPSSLSQDQDGGAMNGDLHGESNGPSDVYAAISSVDRLQAEPESLRKWREEQRDRLEELDANSRKQEAEWKEKAKLELEEWHTRQNEQLEKTKVNNRVLDEDFYKQPFADLIGYVTHINHPCYRLDQAAEEAMVSELDENSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVR

Target ORF information:

RefSeq Version	NM_213045.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio clathrin, light chain A (clta), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_213045.1

ORF Insert Sequence:

ATGGACGATT TCGATATGCT CAGTGCCCCT CAAGGAAGCG CAGGGAACGG TGTCGGGGCA 
GACGAGGACC CGGCGGCGGC ATTTCTGGCC CAGCAAGAGA GCGAGATCGC TGGCATCGAG 
AATGACGAGG GCTTCAGCAT CCTGGACAGC GGAGATGTGC CTTCGTCCCT GAGCCAAGAC 
CAGGACGGTG GAGCAATGAA TGGAGATCTG CATGGGGAGA GTAATGGCCC TTCAGATGTG 
TACGCGGCCA TCTCCAGTGT GGATCGGTTG CAGGCTGAGC CGGAGAGCTT GAGGAAGTGG 
AGAGAGGAGC AGCGAGATAG GCTGGAGGAG CTCGATGCGA ACTCGCGTAA ACAGGAGGCC 
GAGTGGAAAG AGAAGGCAAA GCTGGAGCTG GAGGAATGGC ACACCAGGCA GAACGAGCAG 
CTGGAGAAAA CCAAAGTCAA CAACAGGGTG CTGGATGAGG ATTTCTACAA ACAACCCTTC 
GCTGATCTGA TTGGTTATGT CACTCACATT AACCATCCTT GCTACCGCCT AGACCAGGCG 
GCTGAGGAAG CCATGGTGTC GGAGCTGGAT GAAAACAGTC CTGGCACAGA ATGGGAACGT 
GTGGCGCGTC TTTGCGATTT CAACCCTAAA TCCAGCAAGC AGGCAAAGGA TGTGTCCCGC 
ATGCGTTCAG TGCTCATCTC TCTTAAACAG GCTCCGCTCG TCCGCTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

clta ( XM_005159805.3 ) cDNA ORF clone, Danio rerio(zebrafish) -> XP_005159862.1 Danio rerio clathrin, light chain A (clta), transcript variant X1, mRNA.

Price & Availability↑

CloneID	ODa05514
Clone ID Related Accession (Same CDS sequence)	XM_005159805.3
Accession Version	XM_005159805.3 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 672bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-06-14
Organism	Danio rerio(zebrafish)
Product	clathrin light chain A isoform X1
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007112.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_005159805.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGACGATT TCGATATGCT CAGTGCCCCT CAAGGAAGCG CAGGGAACGG TGTCGGGGCA 
GACGAGGACC CGGCGGCGGC ATTTCTGGCC CAGCAAGAGA GCGAGATCGC TGGCATCGAG 
AATGACGAGG GCTTCAGCAT CCTGGACAGC GGAGATGTGC CTTCGTCCCT GAGCCAAGAC 
CAGGACGGTG GAGCAATGAA TGGAGATCTG CATGGGGAGA GTAATGGCCC TTCAGATGTG 
TACGCGGCCA TCTCCAGTGT GGATCGGTTG CAGGCTGAGC CGGAGAGCTT GAGGAAGTGG 
AGAGAGGAGC AGCGAGATAG GCTGGAGGAG CTCGATGCGA ACTCGCGTAA ACAGGAGGCC 
GAGTGGAAAG AGAAGGCAAA GCTGGAGCTG GAGGAATGGC ACACCAGGCA GAACGAGCAG 
CTGGAGAAAA CCAAAGTCAA CAACAGGGTG CTGGATGAGG ATTTCTACAA ACAACCCTTC 
GCTGATCTGA TTGGTTATGT GGCGGCTGAG GAAGCCATGG TGTCGGAGCT GGATGAAAAC 
AGTCCTGGCA CAGAATGGGA ACGTGTGGCG CGTCTTTGCG ATTTCAACCC TAAATCCAGC 
AAGCAGGCAA AGGATGTGTC CCGCATGCGT TCAGTGCTCA TCTCTCTTAA ACAGGCTCCG 
CTCGTCCGCT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_005159862.1
CDS	104..775
Translation	MDDFDMLSAPQGSAGNGVGADEDPAAAFLAQQESEIAGIENDEGFSILDSGDVPSSLSQDQDGGAMNGDLHGESNGPSDVYAAISSVDRLQAEPESLRKWREEQRDRLEELDANSRKQEAEWKEKAKLELEEWHTRQNEQLEKTKVNNRVLDEDFYKQPFADLIGYVAAEEAMVSELDENSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVR

Target ORF information:

RefSeq Version	XM_005159805.3
Organism	Danio rerio(zebrafish)
Definition	Danio rerio clathrin, light chain A (clta), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_005159805.3

ORF Insert Sequence:

ATGGACGATT TCGATATGCT CAGTGCCCCT CAAGGAAGCG CAGGGAACGG TGTCGGGGCA 
GACGAGGACC CGGCGGCGGC ATTTCTGGCC CAGCAAGAGA GCGAGATCGC TGGCATCGAG 
AATGACGAGG GCTTCAGCAT CCTGGACAGC GGAGATGTGC CTTCGTCCCT GAGCCAAGAC 
CAGGACGGTG GAGCAATGAA TGGAGATCTG CATGGGGAGA GTAATGGCCC TTCAGATGTG 
TACGCGGCCA TCTCCAGTGT GGATCGGTTG CAGGCTGAGC CGGAGAGCTT GAGGAAGTGG 
AGAGAGGAGC AGCGAGATAG GCTGGAGGAG CTCGATGCGA ACTCGCGTAA ACAGGAGGCC 
GAGTGGAAAG AGAAGGCAAA GCTGGAGCTG GAGGAATGGC ACACCAGGCA GAACGAGCAG 
CTGGAGAAAA CCAAAGTCAA CAACAGGGTG CTGGATGAGG ATTTCTACAA ACAACCCTTC 
GCTGATCTGA TTGGTTATGT GGCGGCTGAG GAAGCCATGG TGTCGGAGCT GGATGAAAAC 
AGTCCTGGCA CAGAATGGGA ACGTGTGGCG CGTCTTTGCG ATTTCAACCC TAAATCCAGC 
AAGCAGGCAA AGGATGTGTC CCGCATGCGT TCAGTGCTCA TCTCTCTTAA ACAGGCTCCG 
CTCGTCCGCT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

clta ( XM_005159806.3 ) cDNA ORF clone, Danio rerio(zebrafish) -> XP_005159863.1 Danio rerio clathrin, light chain A (clta), transcript variant X2, mRNA.

Price & Availability↑

CloneID	ODa05515
Clone ID Related Accession (Same CDS sequence)	XM_005159806.3
Accession Version	XM_005159806.3 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 618bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-06-14
Organism	Danio rerio(zebrafish)
Product	clathrin light chain A isoform X2
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007112.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_005159806.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGACGATT TCGATATGCT CAGTGCCCCT CAAGGAAGCG CAGGGAACGG TGTCGGGGCA 
GACGAGGACC CGGCGGCGGC ATTTCTGGCC CAGCAAGAGA GCGAGATCGC TGGCATCGAG 
AATGACGAGG GCTTCAGCAT CCTGGACAGC GGAGATGTGC CTTCGTCCCT GAGCCAAGAC 
CAGGACGGTG GAGCAATGAA TGGAGATCTG CATGGGGAGA GTAATGGCCC TTCAGATGTG 
TACGCGGCCA TCTCCAGTGT GGATCGGTTG CAGGCTGAGC CGGAGAGCTT GAGGAAGTGG 
AGAGAGGAGC AGCGAGATAG GCTGGAGGAG CTCGATGCGA ACTCGCGTAA ACAGGAGGCC 
GAGTGGAAAG AGAAGGCAAA GCTGGAGCTG GAGGAATGGC ACACCAGGCA GAACGAGCAG 
CTGGAGAAAA CCAAAGTCAA CAACAGGGCG GCTGAGGAAG CCATGGTGTC GGAGCTGGAT 
GAAAACAGTC CTGGCACAGA ATGGGAACGT GTGGCGCGTC TTTGCGATTT CAACCCTAAA 
TCCAGCAAGC AGGCAAAGGA TGTGTCCCGC ATGCGTTCAG TGCTCATCTC TCTTAAACAG 
GCTCCGCTCG TCCGCTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_005159863.1
CDS	104..721
Translation	MDDFDMLSAPQGSAGNGVGADEDPAAAFLAQQESEIAGIENDEGFSILDSGDVPSSLSQDQDGGAMNGDLHGESNGPSDVYAAISSVDRLQAEPESLRKWREEQRDRLEELDANSRKQEAEWKEKAKLELEEWHTRQNEQLEKTKVNNRAAEEAMVSELDENSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVR

Target ORF information:

RefSeq Version	XM_005159806.3
Organism	Danio rerio(zebrafish)
Definition	Danio rerio clathrin, light chain A (clta), transcript variant X2, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_005159806.3

ORF Insert Sequence:

ATGGACGATT TCGATATGCT CAGTGCCCCT CAAGGAAGCG CAGGGAACGG TGTCGGGGCA 
GACGAGGACC CGGCGGCGGC ATTTCTGGCC CAGCAAGAGA GCGAGATCGC TGGCATCGAG 
AATGACGAGG GCTTCAGCAT CCTGGACAGC GGAGATGTGC CTTCGTCCCT GAGCCAAGAC 
CAGGACGGTG GAGCAATGAA TGGAGATCTG CATGGGGAGA GTAATGGCCC TTCAGATGTG 
TACGCGGCCA TCTCCAGTGT GGATCGGTTG CAGGCTGAGC CGGAGAGCTT GAGGAAGTGG 
AGAGAGGAGC AGCGAGATAG GCTGGAGGAG CTCGATGCGA ACTCGCGTAA ACAGGAGGCC 
GAGTGGAAAG AGAAGGCAAA GCTGGAGCTG GAGGAATGGC ACACCAGGCA GAACGAGCAG 
CTGGAGAAAA CCAAAGTCAA CAACAGGGCG GCTGAGGAAG CCATGGTGTC GGAGCTGGAT 
GAAAACAGTC CTGGCACAGA ATGGGAACGT GTGGCGCGTC TTTGCGATTT CAACCCTAAA 
TCCAGCAAGC AGGCAAAGGA TGTGTCCCGC ATGCGTTCAG TGCTCATCTC TCTTAAACAG 
GCTCCGCTCG TCCGCTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

Novel transgenic lines to fluorescently label clathrin and caveolin endosomes in live zebrafish.
Zebrafish12(2)202-3(2015 Apr)
Arbizzani F,Mayrhofer M,Mione M

Synaptic vesicles are "primed" for fast clathrin-mediated endocytosis at the ribbon synapse.
Frontiers in molecular neuroscience791(2014)
Pelassa I,Zhao C,Pasche M,Odermatt B,Lagnado L

Zebrafish miR-1 and miR-133 shape muscle gene expression and regulate sarcomeric actin organization.
Genes & development23(5)619-32(2009 Mar)
Mishima Y,Abreu-Goodger C,Staton AA,Stahlhut C,Shou C,Cheng C,Gerstein M,Enright AJ,Giraldez AJ