zgc:56699 cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	zgc:56699
Entrez Gene ID	405758
Full Name	zgc:56699
Synonyms	Gtsf1,fk52a03,wu:fk52a03
General protein information	Preferred Names zgc:56699 Names gametocyte-specific factor 1
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
XM_017353536.1	XP_017209025.1	gametocyte-specific factor 1 isoform X1
NM_212833.1	NP_997998.1	gametocyte-specific factor 1

Pathways from BioSystems

Homologies

Bos taurus (cattle)	GTSF1	NP_001029445.1
Xenopus tropicalis (tropical clawed frog)	gtsf1	NP_001164993.1
Homo sapiens (human)	GTSF1	NP_653195.2
Pan troglodytes (chimpanzee)	GTSF1	XP_003313670.1
Canis lupus familiaris (dog)	GTSF1	XP_005636790.1
Gallus gallus (chicken)	GTSF1	XP_001234364.2
Danio rerio (zebrafish)	zgc:56699	NP_997998.1
Mus musculus (house mouse)	Gtsf1	NP_083073.1
Rattus norvegicus (Norway rat)	Gtsf1	NP_001073175.1
Danio rerio (zebrafish)	LOC100535654	XP_003199057.2

Gene Ontology
Bibliography

Related articles in PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

Transcriptomic analyses reveal novel genes with sexually dimorphic expression in the zebrafish gonad and brain.
Sreenivasan R, Cai M, Bartfai R, Wang X, Christoffels A, Orban L
PloS one3(3)e1791(2008 Mar)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following zgc:56699 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the zgc:56699 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa35326	NM_212833.1 Latest version!	Danio rerio zgc:56699 (zgc:56699), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$104.30 $149.00
ODa57352	XM_017353536.1 Latest version!	Danio rerio zgc:56699 (zgc:56699), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$104.30 $149.00

ORF Online Only Promotion

Next-day Shipping ORF Clones ( in default vector with tag)
1 Clone	30% OFF
2-4 Clone	40% OFF
5 or more Clone	50% OFF
All Other ORF Clones
30% OFF

*Business Day

** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

zgc:56699 ( NM_212833.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_997998.1 Danio rerio zgc:56699 (zgc:56699), mRNA.

Price & Availability↑

CloneID	ODa35326
Clone ID Related Accession (Same CDS sequence)	NM_212833.1
Accession Version	NM_212833.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 549bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2018-06-26
Organism	Danio rerio(zebrafish)
Product	gametocyte-specific factor 1
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC049064.1. ##Evidence-Data-START## Transcript exon combination :: BC049064.1, EH547183.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA3505385, SAMEA3505386 [ECO:0000348] ##Evidence-Data-END##

ATGGCCACTT ATAGGTTTGG CAGTAGCGTC GGTCCGTCTG GAGTCCACTC TGAAAGTACA 
GGGCAGATGT GGAATGAAGA CAACGGTTAT GGTGAAGAAA CGGAAGATGC CAGCGACCCT 
AATAGGATTG TGCAGTGCCC ATATGACAAA AACCACCAGA TCAGAGCCTC ACGCTTCCCT 
TTTCATGTTC TCAAGTGCAG AAAGAACCAC CCCAAACTGG CCAGTGAACT GAAGACCTGC 
CCCTTTAATG CCAGACACTT GATTCCCAAG CATGAGATGT CTCATCACAT AGCAAACTGC 
GAAGACAAGA GGTGTCTGAA TGCTGAAGAT GGAAATGTAG AAGTATTGGA GAAGTTCCAG 
GTTCCTGTTA ACACCTGGAC AAACCCTGCA CCCAATGAGG ACTGGGAAAC AGAGACTGAT 
GATAATGCTG CTATGTTTGT CTGGGGTGAA TCAACCAATC CGCTTCCGCA AAACAAGCCA 
GAGCCGGATA CCACCATCAG TTTATCCGAT GGACTGCGGG CACCGCGGAC TCTTCCATGG 
AAACTCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_997998.1
CDS	132..680
Translation	MATYRFGSSVGPSGVHSESTGQMWNEDNGYGEETEDASDPNRIVQCPYDKNHQIRASRFPFHVLKCRKNHPKLASELKTCPFNARHLIPKHEMSHHIANCEDKRCLNAEDGNVEVLEKFQVPVNTWTNPAPNEDWETETDDNAAMFVWGESTNPLPQNKPEPDTTISLSDGLRAPRTLPWKL

Target ORF information:

RefSeq Version	NM_212833.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio zgc:56699 (zgc:56699), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_212833.1

ORF Insert Sequence:

ATGGCCACTT ATAGGTTTGG CAGTAGCGTC GGTCCGTCTG GAGTCCACTC TGAAAGTACA 
GGGCAGATGT GGAATGAAGA CAACGGTTAT GGTGAAGAAA CGGAAGATGC CAGCGACCCT 
AATAGGATTG TGCAGTGCCC ATATGACAAA AACCACCAGA TCAGAGCCTC ACGCTTCCCT 
TTTCATGTTC TCAAGTGCAG AAAGAACCAC CCCAAACTGG CCAGTGAACT GAAGACCTGC 
CCCTTTAATG CCAGACACTT GATTCCCAAG CATGAGATGT CTCATCACAT AGCAAACTGC 
GAAGACAAGA GGTGTCTGAA TGCTGAAGAT GGAAATGTAG AAGTATTGGA GAAGTTCCAG 
GTTCCTGTTA ACACCTGGAC AAACCCTGCA CCCAATGAGG ACTGGGAAAC AGAGACTGAT 
GATAATGCTG CTATGTTTGT CTGGGGTGAA TCAACCAATC CGCTTCCGCA AAACAAGCCA 
GAGCCGGATA CCACCATCAG TTTATCCGAT GGACTGCGGG CACCGCGGAC TCTTCCATGG 
AAACTCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

zgc:56699 ( XM_017353536.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> XP_017209025.1 Danio rerio zgc:56699 (zgc:56699), transcript variant X1, mRNA.

Price & Availability↑

CloneID	ODa57352
Clone ID Related Accession (Same CDS sequence)	XM_017353536.1
Accession Version	XM_017353536.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 549bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-06-23
Organism	Danio rerio(Zebrafish)
Product	gametocyte-specific factor 1 isoform X1
Comment	MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007134.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGCCACTT ATAGGTTTGG CAGTAGCGTC GGTCCGTCTG GAGTCCACTC TGAAAGTACA 
GGGCAGATGT GGAATGAAGA CAACGGTTAT GGTGAAGAAA CGGAAGATGC CAGCGACCCT 
AATAGGATTG TGCAGTGCCC ATATGACAAA AACCACCAGA TCAGAGCCTC ACGCTTCCCT 
TTTCATGTTC TCAAGTGCAG AAAGAACCAC CCCAAACTGG CCAGTGAACT GAAGACCTGC 
CCCTTTAATG CCAGACACTT GATTCCCAAG CATGAGATGT CTCATCACAT AGCAAACTGC 
GAAGACAAGA GGTGTTTGAA CGCTGAAGAT GGAAATGTAG AAGTATTGGA GAAGTTCCAG 
GTTCCTGTTA ACACCTGGAC GAACCCTGCA CCCAATGAGG ACTGGGAAAC AGAGACTGAT 
GATAATGCTG CTATGTTTGT CTGGGGTGAA TCAACCAATC CGCTTCCGCA GAACAAGCCA 
GAGCCGGATA CCACCATCAG TTTATCCGAT GGACTGCGGG CACCACGGAC TCTTCCATGG 
AAACTCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_017209025.1
CDS	400..948
Translation	MATYRFGSSVGPSGVHSESTGQMWNEDNGYGEETEDASDPNRIVQCPYDKNHQIRASRFPFHVLKCRKNHPKLASELKTCPFNARHLIPKHEMSHHIANCEDKRCLNAEDGNVEVLEKFQVPVNTWTNPAPNEDWETETDDNAAMFVWGESTNPLPQNKPEPDTTISLSDGLRAPRTLPWKL

Target ORF information:

RefSeq Version	XM_017353536.1
Organism	Danio rerio(Zebrafish)
Definition	Danio rerio zgc:56699 (zgc:56699), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_017353536.1

ORF Insert Sequence:

ATGGCCACTT ATAGGTTTGG CAGTAGCGTC GGTCCGTCTG GAGTCCACTC TGAAAGTACA 
GGGCAGATGT GGAATGAAGA CAACGGTTAT GGTGAAGAAA CGGAAGATGC CAGCGACCCT 
AATAGGATTG TGCAGTGCCC ATATGACAAA AACCACCAGA TCAGAGCCTC ACGCTTCCCT 
TTTCATGTTC TCAAGTGCAG AAAGAACCAC CCCAAACTGG CCAGTGAACT GAAGACCTGC 
CCCTTTAATG CCAGACACTT GATTCCCAAG CATGAGATGT CTCATCACAT AGCAAACTGC 
GAAGACAAGA GGTGTTTGAA CGCTGAAGAT GGAAATGTAG AAGTATTGGA GAAGTTCCAG 
GTTCCTGTTA ACACCTGGAC GAACCCTGCA CCCAATGAGG ACTGGGAAAC AGAGACTGAT 
GATAATGCTG CTATGTTTGT CTGGGGTGAA TCAACCAATC CGCTTCCGCA GAACAAGCCA 
GAGCCGGATA CCACCATCAG TTTATCCGAT GGACTGCGGG CACCACGGAC TCTTCCATGG 
AAACTCTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

Transcriptomic analyses reveal novel genes with sexually dimorphic expression in the zebrafish gonad and brain.
PloS one3(3)e1791(2008 Mar)
Sreenivasan R,Cai M,Bartfai R,Wang X,Christoffels A,Orban L