smu1a cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	smu1a
Entrez Gene ID	393168
Full Name	SMU1, DNA replication regulator and spliceosomal factor a
Synonyms	smu1,zgc:56147
General protein information	Preferred Names SMU1, DNA replication regulator and spliceosomal factor a Names WD40 repeat-containing protein SMU1 smu-1 suppressor of mec-8 and unc-52 homolog a smu-1 suppressor of mec-8 and unc-52 protein homolog
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_200199.1	NP_956493.1	WD40 repeat-containing protein SMU1

Pathways from BioSystems

Homologies

Mus musculus (house mouse)	Smu1	NP_067510.3
Danio rerio (zebrafish)	smu1a	NP_956493.1
Drosophila melanogaster (fruit fly)	Smu1	NP_001247189.1
Oryza sativa (rice)	Os01g0322800	NP_001042893.1
Pan troglodytes (chimpanzee)	SMU1	XP_001158775.2
Rattus norvegicus (Norway rat)	Smu1	NP_476543.1
Anopheles gambiae (African malaria mosquito)	AgaP_AGAP001414	XP_321720.3
Homo sapiens (human)	SMU1	NP_060695.2
Caenorhabditis elegans (roundworm)	smu-1	NP_493279.1
Arabidopsis thaliana (thale cress)	SMU1	NP_177513.2
	SMU1	XP_001101488.1
Canis lupus familiaris (dog)	SMU1	XP_531971.2
Gallus gallus (chicken)	SMU1	NP_001007980.1
Bos taurus (cattle)	SMU1	NP_001033662.1
Xenopus tropicalis (tropical clawed frog)	smu1	NP_989188.1

Gene Ontology
Bibliography

Related articles in PubMed

Evolution of complexity in the zebrafish synapse proteome.
Bay?s ?, Collins MO, Reig-Viader R, Gou G, Goulding D, Izquierdo A, Choudhary JS, Emes RD, Grant SG
Nature communications814613(2017 Mar)

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

A beta1,4-galactosyltransferase is required for convergent extension movements in zebrafish.
Machingo QJ, Fritz A, Shur BD
Developmental biology297(2)471-82(2006 Sep)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following smu1a gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the smu1a cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa38275	NM_200199.1 Latest version!	Danio rerio SMU1 DNA replication regulator and spliceosomal factor a (smu1a), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$342.30 $489.00

ORF Online Only Promotion

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

smu1a ( NM_200199.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_956493.1 Danio rerio SMU1 DNA replication regulator and spliceosomal factor a (smu1a), mRNA.

Price & Availability↑

CloneID	ODa38275
Clone ID Related Accession (Same CDS sequence)	NM_200199.1
Accession Version	NM_200199.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1542bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-04-07
Organism	Danio rerio(zebrafish)
Product	WD40 repeat-containing protein SMU1
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC045945.1. ##Evidence-Data-START## Transcript exon combination :: BC045945.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END##

ATGTCTATTG AAATAGAGTC AGCAGACGTG ATTCGTCTGA TCATGCAGTA CCTGAAGGAA 
AACAGCTTGC ATCGGACTTT AGCAATGCTC CAGGAGGAGA CGACTGTGTC CCTCAACACG 
GTGGACAGTA TTGAGAGTTT TGTGGCCGAC ATCAACAGCG GTCACTGGGA CACCGTACTG 
CAGGCTATAC AGTCCCTCAA ACTCCCTGAC AAGACCCTCA TTGACCTTTA CGAACAGGTT 
GTTCTTGAGC TGATTGAACT CCGAGAGTTG GGAGCTGCCA GGTCTTTGTT GAGGCAGACG 
GATCCCATGA TAATGCTCAA GCAAACTCAA CCCGAGCGGT ACATCCATTT GGAGAATCTT 
CTGGCACGCT CTTACTTTGA CCCACGAGAG GCCTATCCTG ATGGAAGCAG TAAAGAGAAA 
CGGAGAGCAG CTATAGCTCA GGCTCTTGCT GGTGAAGTGA GTGTGGTGCC GCCATCACGT 
CTCATGGCTC TGCTTGGACA GTCTCTAAAG TGGCAGCAGC ATCAGGGTCT TCTTCCCCCC 
GGTATGACTA TTGATTTATT CAGAGGTAAA GCTGCTGTGA AGGATGTAGA AGAGGAGCGA 
TTCCCAACAC AGCTGGCCAG ACACATCAAG TTTGGTCAGA AGTCTCATGT GGAGTGTGCG 
CGCTTCTCTC CTGATGGCCA GTATCTGGTC ACTGGATCTG TGGATGGATT TATTGAAGTG 
TGGAACTTCA CTACTGGTAA AATCAGAAAG GATCTGAAGT ATCAGGCTCA GGATAACTTC 
ATGATGATGG ATGATGCGGT GCTGTGCATG TCTTTTAGTC GGGACACTGA AATGCTGGCC 
ACAGGAGCCC AGGATGGCAA GATTAAGGTG TGGAAGATTC AGAGCGGTCA GTGTCTGCGG 
CGGTACGAGC GCGCTCACAG TAAAGGCGTC ACCTGTCTCA GCTTCAGTAA AGACAGCACT 
CAGATTCTCT CTGCGTCCTT TGACCAGACT ATTAGGATAC ATGGGTTAAA ATCAGGCAAG 
TGTTTGAAGG AGTTTCGAGG CCATTCTTCA TTTGTGAATG AAGCCACGCT CACTCCTGAC 
GGTCATCACG CCATCAGCGC TTCCTCTGAT GGAACTGTGA AGGTCTGGAA TATGAAGACC 
ACAGAATGCA CCAGCACATT CAAGTCTCTG GGCACCTCTG CAGGGACTGA CATCACCGTT 
AACAACGTGA TTCTGCTTCC CAAAAACCCG GAGCATTTCG TCGTGTGTAA CCGATCCAAC 
ACTGTTGTCA TCATGAACAT GCAGGGCCAG ATTGTGAGGA GTTTCAGCTC CGGTAAAAGA 
GAAGGAGGTG ATTTCGTGTG CTGTACTCTG TCTCCGCGTG GCGAGTGGAT CTACTGTGTG 
GGAGAGGACT ATGTGCTTTA CTGTTTCAGC ACAGTCACAG GCAAACTGGA GAGAACGCTG 
ACTGTTCATG AGAAGGACGT GATCGGTATC GCCCACCATC CGCATCAGAA TTTAATCGGC 
ACGTACAGTG AGGATGGATT GCTCAAACTC TGGAAGCCGT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_956493.1
CDS	143..1684
Translation	MSIEIESADVIRLIMQYLKENSLHRTLAMLQEETTVSLNTVDSIESFVADINSGHWDTVLQAIQSLKLPDKTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENLLARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQSLKWQQHQGLLPPGMTIDLFRGKAAVKDVEEERFPTQLARHIKFGQKSHVECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMSFSRDTEMLATGAQDGKIKVWKIQSGQCLRRYERAHSKGVTCLSFSKDSTQILSASFDQTIRIHGLKSGKCLKEFRGHSSFVNEATLTPDGHHAISASSDGTVKVWNMKTTECTSTFKSLGTSAGTDITVNNVILLPKNPEHFVVCNRSNTVVIMNMQGQIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDYVLYCFSTVTGKLERTLTVHEKDVIGIAHHPHQNLIGTYSEDGLLKLWKP

Target ORF information:

RefSeq Version	NM_200199.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio SMU1 DNA replication regulator and spliceosomal factor a (smu1a), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_200199.1

ORF Insert Sequence:

ATGTCTATTG AAATAGAGTC AGCAGACGTG ATTCGTCTGA TCATGCAGTA CCTGAAGGAA 
AACAGCTTGC ATCGGACTTT AGCAATGCTC CAGGAGGAGA CGACTGTGTC CCTCAACACG 
GTGGACAGTA TTGAGAGTTT TGTGGCCGAC ATCAACAGCG GTCACTGGGA CACCGTACTG 
CAGGCTATAC AGTCCCTCAA ACTCCCTGAC AAGACCCTCA TTGACCTTTA CGAACAGGTT 
GTTCTTGAGC TGATTGAACT CCGAGAGTTG GGAGCTGCCA GGTCTTTGTT GAGGCAGACG 
GATCCCATGA TAATGCTCAA GCAAACTCAA CCCGAGCGGT ACATCCATTT GGAGAATCTT 
CTGGCACGCT CTTACTTTGA CCCACGAGAG GCCTATCCTG ATGGAAGCAG TAAAGAGAAA 
CGGAGAGCAG CTATAGCTCA GGCTCTTGCT GGTGAAGTGA GTGTGGTGCC GCCATCACGT 
CTCATGGCTC TGCTTGGACA GTCTCTAAAG TGGCAGCAGC ATCAGGGTCT TCTTCCCCCC 
GGTATGACTA TTGATTTATT CAGAGGTAAA GCTGCTGTGA AGGATGTAGA AGAGGAGCGA 
TTCCCAACAC AGCTGGCCAG ACACATCAAG TTTGGTCAGA AGTCTCATGT GGAGTGTGCG 
CGCTTCTCTC CTGATGGCCA GTATCTGGTC ACTGGATCTG TGGATGGATT TATTGAAGTG 
TGGAACTTCA CTACTGGTAA AATCAGAAAG GATCTGAAGT ATCAGGCTCA GGATAACTTC 
ATGATGATGG ATGATGCGGT GCTGTGCATG TCTTTTAGTC GGGACACTGA AATGCTGGCC 
ACAGGAGCCC AGGATGGCAA GATTAAGGTG TGGAAGATTC AGAGCGGTCA GTGTCTGCGG 
CGGTACGAGC GCGCTCACAG TAAAGGCGTC ACCTGTCTCA GCTTCAGTAA AGACAGCACT 
CAGATTCTCT CTGCGTCCTT TGACCAGACT ATTAGGATAC ATGGGTTAAA ATCAGGCAAG 
TGTTTGAAGG AGTTTCGAGG CCATTCTTCA TTTGTGAATG AAGCCACGCT CACTCCTGAC 
GGTCATCACG CCATCAGCGC TTCCTCTGAT GGAACTGTGA AGGTCTGGAA TATGAAGACC 
ACAGAATGCA CCAGCACATT CAAGTCTCTG GGCACCTCTG CAGGGACTGA CATCACCGTT 
AACAACGTGA TTCTGCTTCC CAAAAACCCG GAGCATTTCG TCGTGTGTAA CCGATCCAAC 
ACTGTTGTCA TCATGAACAT GCAGGGCCAG ATTGTGAGGA GTTTCAGCTC CGGTAAAAGA 
GAAGGAGGTG ATTTCGTGTG CTGTACTCTG TCTCCGCGTG GCGAGTGGAT CTACTGTGTG 
GGAGAGGACT ATGTGCTTTA CTGTTTCAGC ACAGTCACAG GCAAACTGGA GAGAACGCTG 
ACTGTTCATG AGAAGGACGT GATCGGTATC GCCCACCATC CGCATCAGAA TTTAATCGGC 
ACGTACAGTG AGGATGGATT GCTCAAACTC TGGAAGCCGT AA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Evolution of complexity in the zebrafish synapse proteome.
Nature communications814613(2017 Mar)
Bay?s ?,Collins MO,Reig-Viader R,Gou G,Goulding D,Izquierdo A,Choudhary JS,Emes RD,Grant SG

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

A beta1,4-galactosyltransferase is required for convergent extension movements in zebrafish.
Developmental biology297(2)471-82(2006 Sep)
Machingo QJ,Fritz A,Shur BD