| Gene Symbol | vps-39 |
| Entrez Gene ID | 179902 |
| Full Name | Vacuolar protein sorting-associated protein 39 homolog |
| Gene Type | protein-coding |
| Organism | Caenorhabditis elegans |
ORF » Species Summary » Caenorhabditis elegans » vps-39 cDNA ORF clone
| Gene Symbol | vps-39 |
| Entrez Gene ID | 179902 |
| Full Name | Vacuolar protein sorting-associated protein 39 homolog |
| Gene Type | protein-coding |
| Organism | Caenorhabditis elegans |
| mRNA | Protein | Name |
|---|---|---|
| NM_001047699.4 | NP_001041164.1 | Vacuolar protein sorting-associated protein 39 homolog |
| NM_001047698.3 | NP_001041163.1 | Vacuolar protein sorting-associated protein 39 homolog |
| NM_001129538.2 | NP_001123010.1 | Vacuolar protein sorting-associated protein 39 homolog |
| NM_001047699.5 | NP_001041164.1 | Vacuolar protein sorting-associated protein 39 homolog |
| NM_001129538.3 | NP_001123010.1 | Vacuolar protein sorting-associated protein 39 homolog |
| NM_001047698.2 | NP_001041163.1 | Vacuolar protein sorting-associated protein 39 homolog |
| NM_001373154.1 | NP_001360569.1 | CNH domain-containing protein |
| Caenorhabditis elegans (roundworm) | vps-39 | NP_001041163.1 |
| Pan troglodytes (chimpanzee) | VPS39 | XP_510331.3 |
| Bos taurus (cattle) | VPS39 | NP_001193173.1 |
| Homo sapiens (human) | VPS39 | NP_056104.2 |
| Canis lupus familiaris (dog) | VPS39 | XP_544640.2 |
| Drosophila melanogaster (fruit fly) | CG7146 | NP_650702.1 |
| Schizosaccharomyces pombe (fission yeast) | vam6 | NP_593392.1 |
| Danio rerio (zebrafish) | vps39 | NP_001107012.2 |
| Anopheles gambiae (African malaria mosquito) | AgaP_AGAP002498 | XP_312442.5 |
| Magnaporthe oryzae (rice blast fungus) | MGG_01054 | XP_003717885.1 |
| Neurospora crassa | NCU01539 | XP_956242.2 |
| Oryza sativa (rice) | Os03g0715500 | NP_001051077.1 |
| VPS39 | XP_001102792.1 | |
| Mus musculus (house mouse) | Vps39 | NP_671495.1 |
| Rattus norvegicus (Norway rat) | Vps39 | NP_001012186.2 |
| Gallus gallus (chicken) | VPS39 | NP_001026365.1 |
| Arabidopsis thaliana (thale cress) | EMB2754 | NP_195381.6 |
Genome sequence of the nematode C. elegans: a platform for investigating biology.
Science (New York, N.Y.)282(5396)2012-8(1998 Dec)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
Interacts with LGG-1 and LGG-2 during allophagy.
Title: The C. elegans LC3 acts downstream of GABARAP to degrade autophagosomes by interacting with the HOPS subunit VPS39.
The following vps-39 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the vps-39 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
| CloneID | OCa345855 | |
| Clone ID Related Accession (Same CDS sequence) | NM_001047698.3 , NM_001047698.2 | |
| Accession Version | NM_001047698.3 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 2772bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2019-10-17 | |
| Organism | Caenorhabditis elegans | |
| Product | Vacuolar protein sorting-associated protein 39 homolog | |
| Comment | Comment: REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003283). On Sep 4, 2019 this sequence version replaced NM_001047698.2. | |
1 | ATGTACGATG CATACACGCC TTGCGAAGTA GCTCTCCGAT TACCCGTAGA AGTAACATGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001041163.1 |
| CDS | 24..2795 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001047698.3 |
1 | ATGTACGATG CATACACGCC TTGCGAAGTA GCTCTCCGAT TACCCGTAGA AGTAACATGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OCa345855 | |
| Clone ID Related Accession (Same CDS sequence) | NM_001047698.3 , NM_001047698.2 | |
| Accession Version | NM_001047698.2 | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 2772bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2019-04-08 | |
| Organism | Caenorhabditis elegans | |
| Product | Vacuolar protein sorting-associated protein 39 homolog | |
| Comment | Comment: REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003283). On Jun 26, 2012 this sequence version replaced NM_001047698.1. COMPLETENESS: incomplete on both ends. | |
1 | ATGTACGATG CATACACGCC TTGCGAAGTA GCTCTCCGAT TACCCGTAGA AGTAACATGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001041163.1 |
| CDS | 1..2772 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001047698.2 |
1 | ATGTACGATG CATACACGCC TTGCGAAGTA GCTCTCCGAT TACCCGTAGA AGTAACATGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OCa346122 | |
| Clone ID Related Accession (Same CDS sequence) | NM_001129538.2 , NM_001129538.3 | |
| Accession Version | NM_001129538.2 | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 2763bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2019-04-08 | |
| Organism | Caenorhabditis elegans | |
| Product | Vacuolar protein sorting-associated protein 39 homolog | |
| Comment | Comment: REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003283). On Jun 26, 2012 this sequence version replaced NM_001129538.1. COMPLETENESS: incomplete on both ends. | |
1 | ATGTACGATG CATACACGCC TTGCGAAGTA GCTCTCCGAT TACCCGTAGA AGTAACATGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001123010.1 |
| CDS | 1..2763 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001129538.2 |
1 | ATGTACGATG CATACACGCC TTGCGAAGTA GCTCTCCGAT TACCCGTAGA AGTAACATGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OCa346122 | |
| Clone ID Related Accession (Same CDS sequence) | NM_001129538.2 , NM_001129538.3 | |
| Accession Version | NM_001129538.3 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 2763bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2019-10-17 | |
| Organism | Caenorhabditis elegans | |
| Product | Vacuolar protein sorting-associated protein 39 homolog | |
| Comment | Comment: REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003283). On Sep 4, 2019 this sequence version replaced NM_001129538.2. | |
1 | ATGTACGATG CATACACGCC TTGCGAAGTA GCTCTCCGAT TACCCGTAGA AGTAACATGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001123010.1 |
| CDS | 24..2786 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001129538.3 |
1 | ATGTACGATG CATACACGCC TTGCGAAGTA GCTCTCCGAT TACCCGTAGA AGTAACATGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OCa348001 | |
| Clone ID Related Accession (Same CDS sequence) | NM_001047699.4 , NM_001047699.5 | |
| Accession Version | NM_001047699.4 | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 2781bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2019-04-08 | |
| Organism | Caenorhabditis elegans | |
| Product | Vacuolar protein sorting-associated protein 39 homolog | |
| Comment | Comment: REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003283). On Jun 26, 2012 this sequence version replaced NM_001047699.3. COMPLETENESS: incomplete on both ends. | |
1 | ATGTACGATG CATACACGCC TTGCGAAGTA GCTCTCCGAT TACCCGTAGA AGTAACATGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001041164.1 |
| CDS | 1..2781 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001047699.4 |
1 | ATGTACGATG CATACACGCC TTGCGAAGTA GCTCTCCGAT TACCCGTAGA AGTAACATGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OCa348001 | |
| Clone ID Related Accession (Same CDS sequence) | NM_001047699.4 , NM_001047699.5 | |
| Accession Version | NM_001047699.5 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 2781bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2019-10-17 | |
| Organism | Caenorhabditis elegans | |
| Product | Vacuolar protein sorting-associated protein 39 homolog | |
| Comment | Comment: REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003283). On Sep 4, 2019 this sequence version replaced NM_001047699.4. | |
1 | ATGTACGATG CATACACGCC TTGCGAAGTA GCTCTCCGAT TACCCGTAGA AGTAACATGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001041164.1 |
| CDS | 24..2804 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001047699.5 |
1 | ATGTACGATG CATACACGCC TTGCGAAGTA GCTCTCCGAT TACCCGTAGA AGTAACATGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OCa851010 | |
| Clone ID Related Accession (Same CDS sequence) | NM_001373154.1 | |
| Accession Version | NM_001373154.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 2772bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2019-10-17 | |
| Organism | Caenorhabditis elegans | |
| Product | CNH domain-containing protein | |
| Comment | Comment: REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003283). | |
1 | ATGTACGATG CATACACGCC TTGCGAAGTA GCTCTCCGAT TACCCGTAGA AGTAACATGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001360569.1 |
| CDS | 24..2795 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001373154.1 |
1 | ATGTACGATG CATACACGCC TTGCGAAGTA GCTCTCCGAT TACCCGTAGA AGTAACATGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Genome sequence of the nematode C. elegans: a platform for investigating biology. |