| Gene Symbol | LGALS9 |
| Entrez Gene ID | 396972 |
| Full Name | galectin 9 |
| Synonyms | UATP.I |
| Gene Type | protein-coding |
| Organism | Sus scrofa(pig) |
ORF » Species Summary » Sus scrofa » LGALS9 cDNA ORF clone
| Gene Symbol | LGALS9 |
| Entrez Gene ID | 396972 |
| Full Name | galectin 9 |
| Synonyms | UATP.I |
| Gene Type | protein-coding |
| Organism | Sus scrofa(pig) |
| mRNA | Protein | Name |
|---|---|---|
| XM_021066200.1 | XP_020921859.1 | galectin-9 isoform X1 |
| NM_213932.2 | NP_999097.2 | galectin-9 isoform 1 |
| NM_001348969.1 | NP_001335898.1 | galectin-9 isoform 3 |
| NM_001348971.1 | NP_001335900.1 | galectin-9 isoform 5 |
| NM_001348968.1 | NP_001335897.1 | galectin-9 isoform 2 |
| NM_001348970.1 | NP_001335899.1 | galectin-9 isoform 4 |
PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences.
Uenishi H, Eguchi-Ogawa T, Shinkai H, Okumura N, Suzuki K, Toki D, Hamasima N, Awata T
Nucleic acids research35(Database issue)D650-3(2007 Jan)
PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries.
Uenishi H, Eguchi T, Suzuki K, Sawazaki T, Toki D, Shinkai H, Okumura N, Hamasima N, Awata T
Nucleic acids research32(Database issue)D484-8(2004 Jan)
Molecular and functional characterization of galectin 9 mRNA isoforms in porcine and human cells and tissues.
Spitzenberger F, Graessler J, Schroeder HE
Biochimie83(9)851-62(2001 Sep)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LGALS9 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LGALS9 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
| CloneID | OSe19139 | |
| Clone ID Related Accession (Same CDS sequence) | NM_213932.2 | |
| Accession Version | NM_213932.2 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1068bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-06-14 | |
| Organism | Sus scrofa(pig) | |
| Product | galectin-9 isoform 1 | |
| Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AEMK02000080.1. On or before Feb 24, 2017 this sequence version replaced XM_005669080.2, NM_213932.1. Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1). Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: AJ131827.1, SRR5120059.220659.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103886112, SAMEA103886115 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. | |
1 | ATGGCCTTCA GCGGCGCCCA GGCTCCCTAC ATGAACCCGA TGGTCCCCTT CACAGGGATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_999097.2 |
| CDS | 82..1149 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_213932.2 |
1 | ATGGCCTTCA GCGGCGCCCA GGCTCCCTAC ATGAACCCGA TGGTCCCCTT CACAGGGATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe19141 | |
| Clone ID Related Accession (Same CDS sequence) | NM_001348969.1 | |
| Accession Version | NM_001348969.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 972bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-06-14 | |
| Organism | Sus scrofa(pig) | |
| Product | galectin-9 isoform 3 | |
| Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AEMK02000080.1. On Feb 24, 2017 this sequence version replaced XM_005669082.2. Transcript Variant: This variant (3) lacks an alternate in-frame exon compared to variant 1. The resulting isoform (3) has the same N- and C-termini but is shorter compared to isoform 1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: AJ131826.1, SRR5120059.235254.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103886112, SAMEA103886114 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. | |
1 | ATGGCCTTCA GCGGCGCCCA GGCTCCCTAC ATGAACCCGA TGGTCCCCTT CACAGGGATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001335898.1 |
| CDS | 82..1053 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001348969.1 |
1 | ATGGCCTTCA GCGGCGCCCA GGCTCCCTAC ATGAACCCGA TGGTCCCCTT CACAGGGATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe101233 | |
| Clone ID Related Accession (Same CDS sequence) | NM_001348970.1 | |
| Accession Version | NM_001348970.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 909bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-06-14 | |
| Organism | Sus scrofa(pig) | |
| Product | galectin-9 isoform 4 | |
| Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AEMK02000080.1. Transcript Variant: This variant (4) lacks two alternate in-frame exons and uses an alternate in-frame splice junction compared to variant 1. The resulting isoform (4) has the same N- and C-termini but is shorter compared to isoform 1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMEA103886125, SAMEA103886127 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. | |
1 | ATGGCCTTCA GCGGCGCCCA GGCTCCCTAC ATGAACCCGA TGGTCCCCTT CACAGGGATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001335899.1 |
| CDS | 82..990 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001348970.1 |
1 | ATGGCCTTCA GCGGCGCCCA GGCTCCCTAC ATGAACCCGA TGGTCCCCTT CACAGGGATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe101234 | |
| Clone ID Related Accession (Same CDS sequence) | NM_001348971.1 | |
| Accession Version | NM_001348971.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 621bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-06-14 | |
| Organism | Sus scrofa(pig) | |
| Product | galectin-9 isoform 5 | |
| Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AEMK02000080.1. Transcript Variant: This variant (5) differs in the 3' UTR and coding sequence and lacks an alternate in-frame exons compared to variant 1. The resulting isoform (5) has a shorter and distinct C-terminus and lacks an alternate internal segment compared to isoform 1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: AK232268.1, SRR5275321.1993.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103886111, SAMEA103886112 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. | |
1 | ATGGCCTTCA GCGGCGCCCA GGCTCCCTAC ATGAACCCGA TGGTCCCCTT CACAGGGATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001335900.1 |
| CDS | 82..702 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001348971.1 |
1 | ATGGCCTTCA GCGGCGCCCA GGCTCCCTAC ATGAACCCGA TGGTCCCCTT CACAGGGATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe101240 | |
| Clone ID Related Accession (Same CDS sequence) | NM_001348968.1 | |
| Accession Version | NM_001348968.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1032bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-06-14 | |
| Organism | Sus scrofa(pig) | |
| Product | galectin-9 isoform 2 | |
| Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AEMK02000080.1. Transcript Variant: This variant (2) lacks an alternate in-frame exon compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMN04484926, SAMN04484958 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. | |
1 | ATGGCCTTCA GCGGCGCCCA GGCTCCCTAC ATGAACCCGA TGGTCCCCTT CACAGGGATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001335897.1 |
| CDS | 82..1113 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001348968.1 |
1 | ATGGCCTTCA GCGGCGCCCA GGCTCCCTAC ATGAACCCGA TGGTCCCCTT CACAGGGATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe233216 | |
| Clone ID Related Accession (Same CDS sequence) | XM_021066200.1 | |
| Accession Version | XM_021066200.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 741bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-05-12 | |
| Organism | Sus scrofa(pig) | |
| Product | galectin-9 isoform X1 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010454.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGGCCTTCA GCGGCGCCCA GGCTCCCTAC ATGAACCCGA TGGTCCCCTT CACAGGGATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_020921859.1 |
| CDS | 193..933 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_021066200.1 |
1 | ATGGCCTTCA GCGGCGCCCA GGCTCCCTAC ATGAACCCGA TGGTCCCCTT CACAGGGATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. |
PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. |
Molecular and functional characterization of galectin 9 mRNA isoforms in porcine and human cells and tissues. |