| Gene Symbol | DDX58 |
| Entrez Gene ID | 396723 |
| Full Name | DExD/H-box helicase 58 |
| Synonyms | RHIV-1,RIG-1,RIG-I,RLR-1 |
| Gene Type | protein-coding |
| Organism | Sus scrofa(pig) |
| Genome |
ORF » Species Summary » Sus scrofa » DDX58 cDNA ORF clone
| Gene Symbol | DDX58 |
| Entrez Gene ID | 396723 |
| Full Name | DExD/H-box helicase 58 |
| Synonyms | RHIV-1,RIG-1,RIG-I,RLR-1 |
| Gene Type | protein-coding |
| Organism | Sus scrofa(pig) |
| Genome |
| mRNA | Protein | Name |
|---|---|---|
| XM_021064056.1 | XP_020919715.1 | probable ATP-dependent RNA helicase DDX58 isoform X2 |
| XM_021064055.1 | XP_020919714.1 | probable ATP-dependent RNA helicase DDX58 isoform X2 |
| XM_021064058.1 | XP_020919717.1 | probable ATP-dependent RNA helicase DDX58 isoform X2 |
| XM_021064054.1 | XP_020919713.1 | probable ATP-dependent RNA helicase DDX58 isoform X1 |
| XM_021064057.1 | XP_020919716.1 | probable ATP-dependent RNA helicase DDX58 isoform X2 |
| NM_213804.2 | NP_998969.2 | probable ATP-dependent RNA helicase DDX58 |
Interactions between the influenza A virus RNA polymerase components and retinoic acid-inducible gene I.
Li W, Chen H, Sutton T, Obadan A, Perez DR
Journal of virology88(18)10432-47(2014 Sep)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
Viral RNA polymerase components PB2, PB1, and PA directly target RIG-I.
Title: Interactions between the influenza A virus RNA polymerase components and retinoic acid-inducible gene I.
These data indicate that classical swine fever virus can be recognized by both RIG-I and MDA5 to initiate the RIG-I signaling pathway to trigger innate defenses against infection.
Title: Classical swine fever virus triggers RIG-I and MDA5-dependent signaling pathway to IRF-3 and NF-?B activation to promote secretion of interferon and inflammatory cytokines in porcine alveolar macrophages.
DDX58 had two nonsynonymous SNPs in the helicase domain.
Title: Differences in distribution of single nucleotide polymorphisms among intracellular pattern recognition receptors in pigs.
The following DDX58 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the DDX58 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
| CloneID | OSe00492 | |
| Clone ID Related Accession (Same CDS sequence) | NM_213804.2 | |
| Accession Version | NM_213804.2 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 2832bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2019-12-27 | |
| Organism | Sus scrofa(pig) | |
| Product | probable ATP-dependent RNA helicase DDX58 | |
| Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB426546.1. On Nov 5, 2011 this sequence version replaced NM_213804.1. ##Evidence-Data-START## Transcript exon combination :: AB426546.1, EU126659.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA3179999, SAMEA3180005 [ECO:0000348] ##Evidence-Data-END## | |
1 | ATGACAGCAG AGCAGCGGCG GAATCTGCAC GCTTTCGGGG ACTATGTCAG GAAGACTCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_998969.2 |
| CDS | 1..2832 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_213804.2 |
1 | ATGACAGCAG AGCAGCGGCG GAATCTGCAC GCTTTCGGGG ACTATGTCAG GAAGACTCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe231726 | |
| Clone ID Related Accession (Same CDS sequence) | XM_021064054.1 | |
| Accession Version | XM_021064054.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 2829bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-05-12 | |
| Organism | Sus scrofa(pig) | |
| Product | probable ATP-dependent RNA helicase DDX58 isoform X1 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010452.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGACAGCAG AGCAGCGGCG GAATCTGCAC GCTTTCGGGG ACTATGTCAG GAAGACTCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_020919713.1 |
| CDS | 82..2910 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_021064054.1 |
1 | ATGACAGCAG AGCAGCGGCG GAATCTGCAC GCTTTCGGGG ACTATGTCAG GAAGACTCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe231727 | |
| Clone ID Related Accession (Same CDS sequence) | XM_021064056.1 , XM_021064055.1 , XM_021064058.1 , XM_021064057.1 | |
| Accession Version | XM_021064056.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 2514bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-05-12 | |
| Organism | Sus scrofa(pig) | |
| Product | probable ATP-dependent RNA helicase DDX58 isoform X2 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010452.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGACAGCAG AGCAGCGGCG GAATCTGCAC GCTTTCGGGG ACTATGTCAG GAAGACTCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_020919715.1 |
| CDS | 82..2595 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_021064056.1 |
1 | ATGACAGCAG AGCAGCGGCG GAATCTGCAC GCTTTCGGGG ACTATGTCAG GAAGACTCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe231727 | |
| Clone ID Related Accession (Same CDS sequence) | XM_021064056.1 , XM_021064055.1 , XM_021064058.1 , XM_021064057.1 | |
| Accession Version | XM_021064055.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 2514bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-05-12 | |
| Organism | Sus scrofa(pig) | |
| Product | probable ATP-dependent RNA helicase DDX58 isoform X2 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010452.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGACAGCAG AGCAGCGGCG GAATCTGCAC GCTTTCGGGG ACTATGTCAG GAAGACTCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_020919714.1 |
| CDS | 82..2595 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_021064055.1 |
1 | ATGACAGCAG AGCAGCGGCG GAATCTGCAC GCTTTCGGGG ACTATGTCAG GAAGACTCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe231727 | |
| Clone ID Related Accession (Same CDS sequence) | XM_021064056.1 , XM_021064055.1 , XM_021064058.1 , XM_021064057.1 | |
| Accession Version | XM_021064058.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 2514bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-05-12 | |
| Organism | Sus scrofa(pig) | |
| Product | probable ATP-dependent RNA helicase DDX58 isoform X2 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010452.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGACAGCAG AGCAGCGGCG GAATCTGCAC GCTTTCGGGG ACTATGTCAG GAAGACTCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_020919717.1 |
| CDS | 92..2605 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_021064058.1 |
1 | ATGACAGCAG AGCAGCGGCG GAATCTGCAC GCTTTCGGGG ACTATGTCAG GAAGACTCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OSe231727 | |
| Clone ID Related Accession (Same CDS sequence) | XM_021064056.1 , XM_021064055.1 , XM_021064058.1 , XM_021064057.1 | |
| Accession Version | XM_021064057.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 2514bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-05-12 | |
| Organism | Sus scrofa(pig) | |
| Product | probable ATP-dependent RNA helicase DDX58 isoform X2 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_010452.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Sus scrofa Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGACAGCAG AGCAGCGGCG GAATCTGCAC GCTTTCGGGG ACTATGTCAG GAAGACTCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_020919716.1 |
| CDS | 82..2595 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_021064057.1 |
1 | ATGACAGCAG AGCAGCGGCG GAATCTGCAC GCTTTCGGGG ACTATGTCAG GAAGACTCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Interactions between the influenza A virus RNA polymerase components and retinoic acid-inducible gene I. |