Snx16 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene
Clones
gRNAs

Summary

Gene Symbol	Snx16
Entrez Gene ID	64088
Full Name	sorting nexin 16
General protein information	Preferred Names sorting nexin 16 Names sorting nexin-16
Gene Type	protein-coding
Organism	Rattus norvegicus(Norway rat)
Genome	Chromosome: 2 Map Location: 2q23
Summary	protein involved in membrane trafficking between the early and later endosomal compartments [RGD, Feb 2006].

mRNA and Protein(s)

mRNA	Protein	Name
XM_006232135.3	XP_006232197.1	sorting nexin-16 isoform X1
NM_022289.3	NP_071625.2	sorting nexin-16

Pathways from BioSystems

Homologies

Danio rerio (zebrafish)	snx16	NP_991228.1
Homo sapiens (human)	SNX16	NP_071416.2
Canis lupus familiaris (dog)	SNX16	XP_850210.1
Bos taurus (cattle)	SNX16	XP_003586963.1
Gallus gallus (chicken)	SNX16	NP_001186417.1
Xenopus tropicalis (tropical clawed frog)	snx16	NP_001017302.1
	SNX16	XP_001094072.1
Rattus norvegicus (Norway rat)	Snx16	NP_071625.2
Pan troglodytes (chimpanzee)	SNX16	NP_001233462.1
Mus musculus (house mouse)	Snx16	NP_083344.3

Gene Ontology
Bibliography

Related articles in PubMed

Sorting nexin 16 regulates EGF receptor trafficking by phosphatidylinositol-3-phosphate interaction with the Phox domain.
Choi JH, Hong WP, Kim MJ, Kim JH, Ryu SH, Suh PG
Journal of cell science117(Pt 18)4209-18(2004 Aug)

Evidence for a role of SNX16 in regulating traffic between the early and later endosomal compartments.
Hanson BJ, Hong W
The Journal of biological chemistry278(36)34617-30(2003 Sep)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

SNX16 directs the sorting of EGFR to the endosomal compartment and thus regulates EGF-induced cell signaling.
Title: Sorting nexin 16 regulates EGF receptor trafficking by phosphatidylinositol-3-phosphate interaction with the Phox domain.

SNX16 is a sorting nexin that may function in the trafficking of proteins between the early and late endosomal compartments
Title: Evidence for a role of SNX16 in regulating traffic between the early and later endosomal compartments.

The following Snx16 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Snx16 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ORa05631	NM_022289.3 Latest version!	Rattus norvegicus sorting nexin 16 (Snx16), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	5-7	$188.30 $269.00
ORa24528	XM_006232135.3 Latest version!	Rattus norvegicus sorting nexin 16 (Snx16), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$139.30 $199.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Snx16 ( NM_022289.3 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> NP_071625.2 Rattus norvegicus sorting nexin 16 (Snx16), mRNA.

Price & Availability↑

CloneID	ORa05631
Clone ID Related Accession (Same CDS sequence)	NM_022289.3
Accession Version	NM_022289.3 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1035bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-02-15
Organism	Rattus norvegicus(Norway rat)
Product	sorting nexin-16
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC061554.1. On Aug 31, 2012 this sequence version replaced NM_022289.2. ##Evidence-Data-START## Transcript exon combination :: BC061554.1, AF305780.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00052296, SAMD00052297 [ECO:0000348] ##Evidence-Data-END##

ATGGCAACCC CTTATGTCCC AGTTCCGATG CCAATCGGAA ACTCTGCTTC CAGCTTTACA 
AACAATAGAA ATCAGAGGAG CTCTTCCTTT GGCAGTGTGT CAACAAGCTC AAACTCTTCC 
AAAGGCCAGC TAGAAGACTC AAGTGTGGGC ACTTGTAAGC ACACGAATGT CCAGGATCAG 
ATGGACAGTG CATCATCAGT CTGCGGCAGT CCTCTCATTA GAACTAAATT TACAGGTACA 
GATTCGTCCA TTGAATATTC TGCTAGACCA AGAGACACTG AAGAACAGCA CCCTGATGCA 
CTGAATTGGG AAGATAGACC CTCAACACCT ACAATTCTGG GTTATGAAGT TATGGAAGAG 
CGGGCCAAAT TTACTGTATA TAAAATCCTA GTAAAGGAAA GTCCAGAAGA AAGCTGGGTA 
GTTTTCAGAA GATACACTGA CTTCTCCAGG CTTAATGACA AATTAAAAGA GATGTTTCCA 
GGCTTTCGAT TAGCACTTCC TCCAAAACGC TGGTTTAAAG ATAATTACAA TGCAGACTTT 
CTAGAAGACA GACAATTAGG ACTACAAGCG TTTCTTCAAA ACTTAGTAGC TCACAAAGAC 
ATCGCTAACT GCCTTGCAGT GAGAGAATTT CTTTGTCTGG ATGATCCACC AGGTCCATTT 
GATAGCCTAG AAGAAAGCAG GGCTTTCTGT GAGACTTTAG AAGAGACTAA CTACCATTTA 
CAGAGAGAAC TACTTGAGAA GCAAAAAGAG GTGGAATCCC TGAAGAAACT GCTTGGGGAA 
AAGCAACTTC ACATAGATGC GTTAGAGACC AGAATCAGAA CATTGTCCTT AGAACCGGGA 
GCATCACTGT ATGTGTCGAG AGCAGAAGGT GGACAGATCC TAAGGGTGCA GTCCTCTGTA 
CTTCAAGTCA ATCGGGATGT CTTGGATGAA GAATCTAGAG CTGATCATAA GCCACACTTC 
AACTCTAGAG AAGCCGGAAG TGCAATAGCA GACATAGAAG TCGCACAGTT GGCATATAAT 
GCTGAAGATG ACTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_071625.2
CDS	289..1323
Translation	MATPYVPVPMPIGNSASSFTNNRNQRSSSFGSVSTSSNSSKGQLEDSSVGTCKHTNVQDQMDSASSVCGSPLIRTKFTGTDSSIEYSARPRDTEEQHPDALNWEDRPSTPTILGYEVMEERAKFTVYKILVKESPEESWVVFRRYTDFSRLNDKLKEMFPGFRLALPPKRWFKDNYNADFLEDRQLGLQAFLQNLVAHKDIANCLAVREFLCLDDPPGPFDSLEESRAFCETLEETNYHLQRELLEKQKEVESLKKLLGEKQLHIDALETRIRTLSLEPGASLYVSRAEGGQILRVQSSVLQVNRDVLDEESRADHKPHFNSREAGSAIADIEVAQLAYNAEDD

Target ORF information:

RefSeq Version	NM_022289.3
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus sorting nexin 16 (Snx16), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_022289.3

ORF Insert Sequence:

ATGGCAACCC CTTATGTCCC AGTTCCGATG CCAATCGGAA ACTCTGCTTC CAGCTTTACA 
AACAATAGAA ATCAGAGGAG CTCTTCCTTT GGCAGTGTGT CAACAAGCTC AAACTCTTCC 
AAAGGCCAGC TAGAAGACTC AAGTGTGGGC ACTTGTAAGC ACACGAATGT CCAGGATCAG 
ATGGACAGTG CATCATCAGT CTGCGGCAGT CCTCTCATTA GAACTAAATT TACAGGTACA 
GATTCGTCCA TTGAATATTC TGCTAGACCA AGAGACACTG AAGAACAGCA CCCTGATGCA 
CTGAATTGGG AAGATAGACC CTCAACACCT ACAATTCTGG GTTATGAAGT TATGGAAGAG 
CGGGCCAAAT TTACTGTATA TAAAATCCTA GTAAAGGAAA GTCCAGAAGA AAGCTGGGTA 
GTTTTCAGAA GATACACTGA CTTCTCCAGG CTTAATGACA AATTAAAAGA GATGTTTCCA 
GGCTTTCGAT TAGCACTTCC TCCAAAACGC TGGTTTAAAG ATAATTACAA TGCAGACTTT 
CTAGAAGACA GACAATTAGG ACTACAAGCG TTTCTTCAAA ACTTAGTAGC TCACAAAGAC 
ATCGCTAACT GCCTTGCAGT GAGAGAATTT CTTTGTCTGG ATGATCCACC AGGTCCATTT 
GATAGCCTAG AAGAAAGCAG GGCTTTCTGT GAGACTTTAG AAGAGACTAA CTACCATTTA 
CAGAGAGAAC TACTTGAGAA GCAAAAAGAG GTGGAATCCC TGAAGAAACT GCTTGGGGAA 
AAGCAACTTC ACATAGATGC GTTAGAGACC AGAATCAGAA CATTGTCCTT AGAACCGGGA 
GCATCACTGT ATGTGTCGAG AGCAGAAGGT GGACAGATCC TAAGGGTGCA GTCCTCTGTA 
CTTCAAGTCA ATCGGGATGT CTTGGATGAA GAATCTAGAG CTGATCATAA GCCACACTTC 
AACTCTAGAG AAGCCGGAAG TGCAATAGCA GACATAGAAG TCGCACAGTT GGCATATAAT 
GCTGAAGATG ACTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

Snx16 ( XM_006232135.3 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> XP_006232197.1 Rattus norvegicus sorting nexin 16 (Snx16), transcript variant X1, mRNA.

Price & Availability↑

CloneID	ORa24528
Clone ID Related Accession (Same CDS sequence)	XM_006232135.3
Accession Version	XM_006232135.3 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 915bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-07-25
Organism	Rattus norvegicus(Norway rat)
Product	sorting nexin-16 isoform X1
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005101.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_006232135.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGCAACCC CTTATGTCCC AGTTCCGATG CCAATCGGAA ACTCTGCTTC CAGCTTTACA 
AACAATAGAA ATCAGAGGAG CTCTTCCTTT GGCAGTGTGT CAACAAGCTC AAACTCTTCC 
AAAGGCCAGC TAGAAGACTC AAGTGTGGGC ACTTGTAAGC ACACGAATGT CCAGGATCAG 
ATGGACAGTG CATCATCAGT CTGCGGCAGT CCTCTCATTA GAACTAAATT TACAGGTACA 
GATTCGTCCA TTGAATATTC TGCTAGACCA AGAGACACTG AAGAACAGCA CCCTGATGCA 
CTGAATTGGG AAGATAGACC CTCAACACCT ACAATTCTGG GTTATGAAGT TATGGAAGAG 
CGGGCCAAAT TTACTGTATA TAAAATCCTA GTAAAGAAAA GTCCAGAAGA AAGCTGGGTA 
GTTTTCAGAA GATACACTGA CTTCTCCAGG CTTAATGACA AATTAAAAGA GATGTTTCCA 
GGCTTTCGAT TAGCACTTCC TCCAAAACGC TGGTTTAAAG ATAATTACAA TGCAGACTTT 
CTAGAAGACA GACAATTAGG ACTACAAGCG TTTCTTCAAA ACTTAGTAGC TCACAAAGAC 
ATCGCTAACT GCCTTGCAGT GAGAGAATTT CTTTGTCTGG ATGATCCACC AGGTCCATTT 
GATAGCCTAG AAGAAAGCAG GGCTTTCTGT GAGACTTTAG AAGAGACTAA CTACCATTTA 
CAGAGAGAAC TACTTGAGAA GCAAAAAGAG GTGGAATCCC TGAAGAAACT GCTTGGGGAA 
AAGCAACTTC ACATAGATGC GTTAGAGACC AGAATCAGAG CTGATCATAA GCCACACTTC 
AACTCTAGAG AAGCCGGAAG TGCAATAGCA GACATAGAAG TCGCACAGTT GGCATATAAT 
GCTGAAGATG ACTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_006232197.1
CDS	302..1216
Translation	MATPYVPVPMPIGNSASSFTNNRNQRSSSFGSVSTSSNSSKGQLEDSSVGTCKHTNVQDQMDSASSVCGSPLIRTKFTGTDSSIEYSARPRDTEEQHPDALNWEDRPSTPTILGYEVMEERAKFTVYKILVKKSPEESWVVFRRYTDFSRLNDKLKEMFPGFRLALPPKRWFKDNYNADFLEDRQLGLQAFLQNLVAHKDIANCLAVREFLCLDDPPGPFDSLEESRAFCETLEETNYHLQRELLEKQKEVESLKKLLGEKQLHIDALETRIRADHKPHFNSREAGSAIADIEVAQLAYNAEDD

Target ORF information:

RefSeq Version	XM_006232135.3
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus sorting nexin 16 (Snx16), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_006232135.3

ORF Insert Sequence:

ATGGCAACCC CTTATGTCCC AGTTCCGATG CCAATCGGAA ACTCTGCTTC CAGCTTTACA 
AACAATAGAA ATCAGAGGAG CTCTTCCTTT GGCAGTGTGT CAACAAGCTC AAACTCTTCC 
AAAGGCCAGC TAGAAGACTC AAGTGTGGGC ACTTGTAAGC ACACGAATGT CCAGGATCAG 
ATGGACAGTG CATCATCAGT CTGCGGCAGT CCTCTCATTA GAACTAAATT TACAGGTACA 
GATTCGTCCA TTGAATATTC TGCTAGACCA AGAGACACTG AAGAACAGCA CCCTGATGCA 
CTGAATTGGG AAGATAGACC CTCAACACCT ACAATTCTGG GTTATGAAGT TATGGAAGAG 
CGGGCCAAAT TTACTGTATA TAAAATCCTA GTAAAGAAAA GTCCAGAAGA AAGCTGGGTA 
GTTTTCAGAA GATACACTGA CTTCTCCAGG CTTAATGACA AATTAAAAGA GATGTTTCCA 
GGCTTTCGAT TAGCACTTCC TCCAAAACGC TGGTTTAAAG ATAATTACAA TGCAGACTTT 
CTAGAAGACA GACAATTAGG ACTACAAGCG TTTCTTCAAA ACTTAGTAGC TCACAAAGAC 
ATCGCTAACT GCCTTGCAGT GAGAGAATTT CTTTGTCTGG ATGATCCACC AGGTCCATTT 
GATAGCCTAG AAGAAAGCAG GGCTTTCTGT GAGACTTTAG AAGAGACTAA CTACCATTTA 
CAGAGAGAAC TACTTGAGAA GCAAAAAGAG GTGGAATCCC TGAAGAAACT GCTTGGGGAA 
AAGCAACTTC ACATAGATGC GTTAGAGACC AGAATCAGAG CTGATCATAA GCCACACTTC 
AACTCTAGAG AAGCCGGAAG TGCAATAGCA GACATAGAAG TCGCACAGTT GGCATATAAT 
GCTGAAGATG ACTAA