Pcdha6 cDNA ORF clone, Rattus norvegicus(Norway rat)

Gene
Clones
gRNAs

Summary

Gene Symbol	Pcdha6
Entrez Gene ID	393088
Full Name	protocadherin alpha 6
Synonyms	rCNRv06
General protein information	Preferred Names protocadherin alpha 6 Names protocadherin alpha-6 cadherin-related neuronal receptor 6
Gene Type	protein-coding
Organism	Rattus norvegicus(Norway rat)
Genome	Chromosome: 18 Map Location: 18p11
Summary	member of a the synaptic cadherins and Reelin receptor protein family [RGD, Feb 2006].

mRNA and Protein(s)

mRNA	Protein	Name
NM_199506.1	NP_955800.1	protocadherin alpha-6

Pathways from BioSystems

Homologies

Mus musculus (house mouse)	Pcdha6	NP_031793.2
Xenopus tropicalis (tropical clawed frog)	LOC100490196	XP_002935957.1
Canis lupus familiaris (dog)	PCDHA6	XP_848931.2
Pan troglodytes (chimpanzee)	PCDHA6	NP_001076060.1
Homo sapiens (human)	PCDHA6	NP_061732.1
Bos taurus (cattle)	LOC540057	XP_002689291.1
Rattus norvegicus (Norway rat)	Pcdha6	NP_955800.1
	PCDHA6	XP_001088628.2

Gene Ontology
Bibliography

Related articles in PubMed

Sequence analysis and expression mapping of the rat clustered protocadherin gene repertoires.
Zou C, Huang W, Ying G, Wu Q
Neuroscience144(2)579-603(2007 Jan)

Comparative genomics and diversifying selection of the clustered vertebrate protocadherin genes.
Wu Q
Genetics169(4)2179-88(2005 Apr)

Interaction with protocadherin-gamma regulates the cell surface expression of protocadherin-alpha.
Murata Y, Hamada S, Morishita H, Mutoh T, Yagi T
The Journal of biological chemistry279(47)49508-16(2004 Nov)

Genomic sequence and organization of the family of CNR/Pcdhalpha genes in rat.
Yanase H, Sugino H, Yagi T
Genomics83(4)717-26(2004 Apr)

Multiple variable first exons: a mechanism for cell- and tissue-specific gene regulation.
Zhang T, Haws P, Wu Q
Genome research14(1)79-89(2004 Jan)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following Pcdha6 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Pcdha6 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ORa05405	NM_199506.1 Latest version!	Rattus norvegicus protocadherin alpha 6 (Pcdha6), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	12-14	$475.30 $679.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Pcdha6 ( NM_199506.1 ) cDNA ORF clone, Rattus norvegicus(Norway rat) -> NP_955800.1 Rattus norvegicus protocadherin alpha 6 (Pcdha6), mRNA.

Price & Availability↑

CloneID	ORa05405
Clone ID Related Accession (Same CDS sequence)	NM_199506.1
Accession Version	NM_199506.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2892bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-09-30
Organism	Rattus norvegicus(Norway rat)
Product	protocadherin alpha-6
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB113389.1. ##Evidence-Data-START## Transcript exon combination :: AB113389.1, AY573980.1 [ECO:0000332] ##Evidence-Data-END##

ATGCGGAGAA AAATAGATCT TCTAATGGAA ACAAAGCAAG AAACATTCTA CATGGATTTT 
ACCACTGACG GCAGACTAGG AACACGGTGT CTGCTGCTCT CGCTCTTGCT CCTTGCAGCC 
TGGGAGGCAG GGAGCGGCCA GCTCCACTAC TCCGTCCCAG AGGAGGCCAA ACACGGCACC 
TTCGTGGGCC GCATCGCGCA GGACCTGGGG CTGGAGTTAG CGGAGCTAGT GCCCCGCTTG 
TTCAGAGTGG CGACCAAGGA TCGCGGAGAC CTTCTGGAGG TAAATCTGCA GAATGGTATT 
TTGTTTGTGA ATTCTCGGAT CGACCGGGAG GAGCTGTGCG GACGGAGCGC GGAGTGCAGC 
ATCCACCTGG AGATGATCGT GGACAGGCCG CTGCAGGTTT TCCACGTGGA GGTGGAGGTG 
AGAGACATTA ATGATAACGC CCCTGTGTTC TCAGTAAAGG AGCAAAGAAT GTTAATTTAC 
GAATCTAGGC TGCCAGATTC TTTGTTTCCA CTAGAGGGCG CATCCGATGC TGATGTTGGA 
TTAAATTCTA TCTTGACCTA TAAACTCAGT TCCAGTGAAT ACTTTGGACT AGATGTGAAA 
ACAAACAGCG ATGGCAACAA ACAAATTAGA CTCTTGTTGA AAAAATCTTT GGACAGAGAG 
GATGTTCCTG AGCATAAACT ACTCCTGACA GCCACGGATG GAGGCAAGCC TGAGCTCACA 
GGCTCCGTTC AGCTGCTGGT CACTGTGCTG GATGTGAATG ACAACGCCCC TACTTTCCAA 
CACCCTGAGT ATGAAGTGAG AATCTTGGAA AACTCAGACA ACGGAACGAC AGTTATTAGA 
CTGAATGCTT CTGACAGGGA TGAAGGGACG AATTCAGCAA TTTCTTACTC TTTTAATAGG 
CTGGTGTCGC CCAGGATTCT TGACCAGTTT AGCATAGATG CAGACACAGG AGAAATCGTA 
ATTCAAGGGA ATTTGGACTT TGAGCAAGTA GATGTCTACA AAATCCACGT TGACGCGACG 
GACAAAGGAC ACCCTCCGAT GGCAGGCCAT TGCACTGTTT TAGTGAGGGT ATTGGATGAA 
AACGACAATG TGCCTAGGAT CACCTTGACT TCCTTATCCC TGCCTGTTCG AGAGGACGCT 
GCACTGGGTA CTGTCATTGC CCTAATTAGC GTTTCAGATC TGGACTCTGG AGTCAATGGG 
CGGGTGACCT GCTCCCTGTC TCCTCATGTT CCCTTCAAGC TGGTGTCCAC CTTCAAGAAT 
TACTATTCGC TTGTGCTGGA CAGCGCCCTG GACCGAGAGA CCACAGCTGA CTATCAGGTG 
GTGGTGACAG CTCAGGACGG GGGTTCGCCT TCTCTGTGTA CCACGGTCAG CGTGTCTGTG 
GAGGTGGCTG ATGTGAATGA CAATGCTCCT GCGTTCGCGC AGCCCGAATA CACGGTGTTC 
GTGAAGGAGA ACAACCCGCC TGGAGCGCAC ATCTTCACTG TGTACGCGGT GGATGCAGAC 
ACACAAGAGA ACGCTTTGGT GTCCTACTCG CTGGTGGAAC GACGGGTGGG CGAGCGCTTG 
CTGTCGAGCT ATGTGTCTGT GCACGCGGAG AGCGGCAAGG TGTTCGCACT GCAGCCTCTG 
GACCATGAGG AGCTGGAGCT GCTGCAGTTC CAGGTGAGCG CGCGGGATGC TGGTGTGCCT 
GCCCTGGGCA GCAATGTGAC TCTGCAGGTG TTTGTGCTGG ATGAGAATGA CAACGCGCCC 
ACGCTGCTTG GACCTTGGAC ACAAGGATCC GGTGGTATAG TGAGCGAACT TGTGTCACCC 
TCTGTGGGTG CTGGCCAAGT TGTCACTAAG GTGCGTGCAG TAGATGCGGA TTCTGGTTAC 
AATGCCTGGC TATCTTATGA ACTGCATCCT TTAACAGGTG GAACACGAAG CCTGTTTCGG 
GTAGGTCTGT ATACGGGCGA GATTAGTACC ACGCGTGCCC TTGAGGAGGC AGATGCACCA 
CGCCATCGCC TATTAGTGCT GGTGAAGGAC CACGGGGAGC CAGCGCTGAT GACCACAGCC 
ACCGTGTTAG TGTCTCTGGT TGAGAACAGC CAGACTCCAA AAGCCTCTTC GCGAGCGGCA 
GGCTCCACCG GCCAGGAAGT GTCGTTAGTG AATGTCAATG TGTACCTGAT TATTGCCATC 
TGCGCGGTGT CCAGCCTGCT AGTTCTAACC CTCATGGTAT ACACTGCACT GCGGTGCTCA 
GTTCCGCCTA CAGAGGGTGT GTGCGGGGCA GGGAAGCCTG TGCTGGTTTG CTCTAGCGCG 
GTGGGGAGCT GGTCCTACTC ACAACAGAGG AGACAGAAGG TTTGTTCTGG AGAGGGGCCA 
CCTAAAACCG ACCTCATGGC CTTCAGCCCG GGTCTTCCTC CTTGTCCGGT TGTGGGTGAG 
CATCAGGATT CAAACGAAGA TCATTGCTCA AGACCCCGAC AGCCCAACCC TGACTGGCGC 
TACTCTGCCT CGCTAAGAGC CGGCATGCAC AGCTCTGTGC ACCTGGAGGA GGCTGGCATT 
CTACGGGCTG GTCCAGGAGG GCCTGATCAA CAGTGGCCAA CAGTATCCAG TGCAACACCA 
GAACCAGAGG CAGGAGAGGT GTCCCCTCCA GTGGGCGCTG GTGTCAACAG CAACAGCTGG 
ACCTTTAAAT ACGGACCCGG CAACCCCAAA CAGCCCGGTC CCGGTGAGTT GCCAGACAAA 
TTCATTATCC CAGGATCTCC TGCAATCATC TCCATCCGGC AGGAGTCTGC TAACAACCAA 
ATTGACAAAA GCGATTTTAT AACCTTCGGC AAAAAGGAGG AGACCAAGAA AAAGAAGAAA 
AAGAAGAAGG GTAACAAGAC CCAGGAGAAA AAAGAGAAAG GGAACAGCAC GACGGACAAC 
AGTGACCAGT GA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_955800.1
CDS	1..2892
Translation	MRRKIDLLMETKQETFYMDFTTDGRLGTRCLLLSLLLLAAWEAGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELVPRLFRVATKDRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEMIVDRPLQVFHVEVEVRDINDNAPVFSVKEQRMLIYESRLPDSLFPLEGASDADVGLNSILTYKLSSSEYFGLDVKTNSDGNKQIRLLLKKSLDREDVPEHKLLLTATDGGKPELTGSVQLLVTVLDVNDNAPTFQHPEYEVRILENSDNGTTVIRLNASDRDEGTNSAISYSFNRLVSPRILDQFSIDADTGEIVIQGNLDFEQVDVYKIHVDATDKGHPPMAGHCTVLVRVLDENDNVPRITLTSLSLPVREDAALGTVIALISVSDLDSGVNGRVTCSLSPHVPFKLVSTFKNYYSLVLDSALDRETTADYQVVVTAQDGGSPSLCTTVSVSVEVADVNDNAPAFAQPEYTVFVKENNPPGAHIFTVYAVDADTQENALVSYSLVERRVGERLLSSYVSVHAESGKVFALQPLDHEELELLQFQVSARDAGVPALGSNVTLQVFVLDENDNAPTLLGPWTQGSGGIVSELVSPSVGAGQVVTKVRAVDADSGYNAWLSYELHPLTGGTRSLFRVGLYTGEISTTRALEEADAPRHRLLVLVKDHGEPALMTTATVLVSLVENSQTPKASSRAAGSTGQEVSLVNVNVYLIIAICAVSSLLVLTLMVYTALRCSVPPTEGVCGAGKPVLVCSSAVGSWSYSQQRRQKVCSGEGPPKTDLMAFSPGLPPCPVVGEHQDSNEDHCSRPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQPGPGELPDKFIIPGSPAIISIRQESANNQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ

Target ORF information:

RefSeq Version	NM_199506.1
Organism	Rattus norvegicus(Norway rat)
Definition	Rattus norvegicus protocadherin alpha 6 (Pcdha6), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_199506.1

ORF Insert Sequence:

ATGCGGAGAA AAATAGATCT TCTAATGGAA ACAAAGCAAG AAACATTCTA CATGGATTTT 
ACCACTGACG GCAGACTAGG AACACGGTGT CTGCTGCTCT CGCTCTTGCT CCTTGCAGCC 
TGGGAGGCAG GGAGCGGCCA GCTCCACTAC TCCGTCCCAG AGGAGGCCAA ACACGGCACC 
TTCGTGGGCC GCATCGCGCA GGACCTGGGG CTGGAGTTAG CGGAGCTAGT GCCCCGCTTG 
TTCAGAGTGG CGACCAAGGA TCGCGGAGAC CTTCTGGAGG TAAATCTGCA GAATGGTATT 
TTGTTTGTGA ATTCTCGGAT CGACCGGGAG GAGCTGTGCG GACGGAGCGC GGAGTGCAGC 
ATCCACCTGG AGATGATCGT GGACAGGCCG CTGCAGGTTT TCCACGTGGA GGTGGAGGTG 
AGAGACATTA ATGATAACGC CCCTGTGTTC TCAGTAAAGG AGCAAAGAAT GTTAATTTAC 
GAATCTAGGC TGCCAGATTC TTTGTTTCCA CTAGAGGGCG CATCCGATGC TGATGTTGGA 
TTAAATTCTA TCTTGACCTA TAAACTCAGT TCCAGTGAAT ACTTTGGACT AGATGTGAAA 
ACAAACAGCG ATGGCAACAA ACAAATTAGA CTCTTGTTGA AAAAATCTTT GGACAGAGAG 
GATGTTCCTG AGCATAAACT ACTCCTGACA GCCACGGATG GAGGCAAGCC TGAGCTCACA 
GGCTCCGTTC AGCTGCTGGT CACTGTGCTG GATGTGAATG ACAACGCCCC TACTTTCCAA 
CACCCTGAGT ATGAAGTGAG AATCTTGGAA AACTCAGACA ACGGAACGAC AGTTATTAGA 
CTGAATGCTT CTGACAGGGA TGAAGGGACG AATTCAGCAA TTTCTTACTC TTTTAATAGG 
CTGGTGTCGC CCAGGATTCT TGACCAGTTT AGCATAGATG CAGACACAGG AGAAATCGTA 
ATTCAAGGGA ATTTGGACTT TGAGCAAGTA GATGTCTACA AAATCCACGT TGACGCGACG 
GACAAAGGAC ACCCTCCGAT GGCAGGCCAT TGCACTGTTT TAGTGAGGGT ATTGGATGAA 
AACGACAATG TGCCTAGGAT CACCTTGACT TCCTTATCCC TGCCTGTTCG AGAGGACGCT 
GCACTGGGTA CTGTCATTGC CCTAATTAGC GTTTCAGATC TGGACTCTGG AGTCAATGGG 
CGGGTGACCT GCTCCCTGTC TCCTCATGTT CCCTTCAAGC TGGTGTCCAC CTTCAAGAAT 
TACTATTCGC TTGTGCTGGA CAGCGCCCTG GACCGAGAGA CCACAGCTGA CTATCAGGTG 
GTGGTGACAG CTCAGGACGG GGGTTCGCCT TCTCTGTGTA CCACGGTCAG CGTGTCTGTG 
GAGGTGGCTG ATGTGAATGA CAATGCTCCT GCGTTCGCGC AGCCCGAATA CACGGTGTTC 
GTGAAGGAGA ACAACCCGCC TGGAGCGCAC ATCTTCACTG TGTACGCGGT GGATGCAGAC 
ACACAAGAGA ACGCTTTGGT GTCCTACTCG CTGGTGGAAC GACGGGTGGG CGAGCGCTTG 
CTGTCGAGCT ATGTGTCTGT GCACGCGGAG AGCGGCAAGG TGTTCGCACT GCAGCCTCTG 
GACCATGAGG AGCTGGAGCT GCTGCAGTTC CAGGTGAGCG CGCGGGATGC TGGTGTGCCT 
GCCCTGGGCA GCAATGTGAC TCTGCAGGTG TTTGTGCTGG ATGAGAATGA CAACGCGCCC 
ACGCTGCTTG GACCTTGGAC ACAAGGATCC GGTGGTATAG TGAGCGAACT TGTGTCACCC 
TCTGTGGGTG CTGGCCAAGT TGTCACTAAG GTGCGTGCAG TAGATGCGGA TTCTGGTTAC 
AATGCCTGGC TATCTTATGA ACTGCATCCT TTAACAGGTG GAACACGAAG CCTGTTTCGG 
GTAGGTCTGT ATACGGGCGA GATTAGTACC ACGCGTGCCC TTGAGGAGGC AGATGCACCA 
CGCCATCGCC TATTAGTGCT GGTGAAGGAC CACGGGGAGC CAGCGCTGAT GACCACAGCC 
ACCGTGTTAG TGTCTCTGGT TGAGAACAGC CAGACTCCAA AAGCCTCTTC GCGAGCGGCA 
GGCTCCACCG GCCAGGAAGT GTCGTTAGTG AATGTCAATG TGTACCTGAT TATTGCCATC 
TGCGCGGTGT CCAGCCTGCT AGTTCTAACC CTCATGGTAT ACACTGCACT GCGGTGCTCA 
GTTCCGCCTA CAGAGGGTGT GTGCGGGGCA GGGAAGCCTG TGCTGGTTTG CTCTAGCGCG 
GTGGGGAGCT GGTCCTACTC ACAACAGAGG AGACAGAAGG TTTGTTCTGG AGAGGGGCCA 
CCTAAAACCG ACCTCATGGC CTTCAGCCCG GGTCTTCCTC CTTGTCCGGT TGTGGGTGAG 
CATCAGGATT CAAACGAAGA TCATTGCTCA AGACCCCGAC AGCCCAACCC TGACTGGCGC 
TACTCTGCCT CGCTAAGAGC CGGCATGCAC AGCTCTGTGC ACCTGGAGGA GGCTGGCATT 
CTACGGGCTG GTCCAGGAGG GCCTGATCAA CAGTGGCCAA CAGTATCCAG TGCAACACCA 
GAACCAGAGG CAGGAGAGGT GTCCCCTCCA GTGGGCGCTG GTGTCAACAG CAACAGCTGG 
ACCTTTAAAT ACGGACCCGG CAACCCCAAA CAGCCCGGTC CCGGTGAGTT GCCAGACAAA 
TTCATTATCC CAGGATCTCC TGCAATCATC TCCATCCGGC AGGAGTCTGC TAACAACCAA 
ATTGACAAAA GCGATTTTAT AACCTTCGGC AAAAAGGAGG AGACCAAGAA AAAGAAGAAA 
AAGAAGAAGG GTAACAAGAC CCAGGAGAAA AAAGAGAAAG GGAACAGCAC GACGGACAAC 
AGTGACCAGT GA